mRNA_E_fasciculatus_S2_contig9830.17841.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L5_ECTSI) HSP 1 Score: 662 bits (1709), Expect = 3.650e-219 Identity = 412/457 (90.15%), Postives = 417/457 (91.25%), Query Frame = 1 Query: 1 QESRKPRNAASGGARVSQMSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVGXXXXXXXXXXLPSAAHATEEEAKEGCRTILEAFLPDKFYQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLKEKKAAAIVIHAAARRFVLRNRYKSVLSKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFAGLMLMELWMEEEENKRKAEEFRMRRRVLAAAIIRSWVRRMVQKYGVKAQRXXXXXXXXXXXXXARNRWLEERVGRVFAIARSGDVDGMMRELRHNPDVLFMRDRHDRFKTLLHLAATSGSTSLLSLLDPLPEDVLVLDSDGCTPLHHAAASSKYDVVKFLASRANGRV 1371 QESRKPRNAASGGARVSQMSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASV LPSAAHATEEEAKEGCRTILEAFLP+K YQIGHTRVFLKE+GQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLKEKKAAAIVIHAAARRFVLR RY+SVLSKVL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR+AGLMLMELWMEEEENKRKAEEFR+RR AAAIIRSWVRRMVQKYGVKAQR ARN WLEERVGRVFAIARSGDVDGMMRELRHNPDVLFMRDRHDRFKTLLHLAATSGSTSLLSLLDPLPEDVLVLDSDGCTPLHHAAASSKYDVVKFLASRANGRV Sbjct: 921 QESRKPRNAASGGARVSQMSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVDGGGEGGGPS-LPSAAHATEEEAKEGCRTILEAFLPEKLYQIGHTRVFLKEKGQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLKEKKAAAIVIHAAARRFVLRKRYRSVLSKVLLLQRWYRSRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYAGLMLMELWMEEEENKRKAEEFRIRR---AAAIIRSWVRRMVQKYGVKAQRVAAARIQRAWLRRARNLWLEERVGRVFAIARSGDVDGMMRELRHNPDVLFMRDRHDRFKTLLHLAATSGSTSLLSLLDPLPEDVLVLDSDGCTPLHHAAASSKYDVVKFLASRANGRV 1373
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL8_9STRA) HSP 1 Score: 243 bits (620), Expect = 5.620e-67 Identity = 251/475 (52.84%), Postives = 307/475 (64.63%), Query Frame = 1 Query: 19 RNAASGGARVSQMSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVGXXXXXXXXXX----LPSAAHATEEEAKEGCRTILEAFLPD-KFYQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLKEKKAAAIVIHAAARRFVLRNRYKSVLSKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFAGLMLMELWMEEEENKRKAEEFRMRRRVLAAAIIRSWVRRMVQKYGVKAQRXXXXXXXXXXXXXARNRWLEERVGRVFAIARSGDVDGMMRELRHNPDVLFMRDRHDRFK-------------------TLLHLAATSGSTSLLSLLDPLPEDVLVLDSDGCTPLHHAAASSKYDVVKFLASRANGRV 1371 R ASG RV +++T TVS+ FRGQL +LM TLR TEPHYIKCIKPN VKAPGGFS HLV +QLNYSGVLEVVRIRREAYP R F EF++RFELL + R + XXXXXXXX LP+A A++ EAK R +L + + +++Q+GHT++FLKEEG + LR +R Y+ A ++ A VR + ++ AAI I R RNR++ + KV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + R ++E+R AA II+ R+ ++ XXXXXXXXXXXXX V F A+ G V+ + ++ P+ L +R R +RFK TLLH AA GSTSL+SLLDPLPEDVL+ D+DG TPLHHA AS+KYD+VKFLA+RAN +V Sbjct: 601 RRTASG--RVHLLATTSTVSRTFRGQLLSLMHTLRNTEPHYIKCIKPNTVKAPGGFSPHLVREQLNYSGVLEVVRIRREAYPVRVSFAEFYDRFELLHARAARVAAXXXXXXXXXPPEWAVLPAAGVASDAEAKVAARAVLTRVMGNAEYFQVGHTQIFLKEEGLEALRRAVRLEYNHYACVVTALVRRRATQKLVARRRTAAITIQKVVRMAQARNRFQKTVRKVQILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL------------RASKEYR------AAEIIQCAWRKSRRERMRXXXXXXXXXXXXXXXXXXXXXXXXXXVDSAFRSAKEGHVNAVAAIIKQFPERLCLRHRRNRFKWQRAXXXXXXXXXXXXXXKTLLHAAAQGGSTSLVSLLDPLPEDVLLRDADGNTPLHHACASAKYDLVKFLAARANTQV 1055
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I1_ECTSI) HSP 1 Score: 154 bits (388), Expect = 1.950e-36 Identity = 173/499 (34.67%), Postives = 239/499 (47.90%), Query Frame = 1 Query: 70 TVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVGXXXXXXXXXXLPSAAHATEEEAKEGCRTILEAFLPDK----FYQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLKEKKAAA----------------------------IVIHAAARRFVLRNRYKSVLSKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-------FAGLMLMELWMEEEEN----KRKAEEFRMRRRVLAAAIIRSWVRRMVQKYGVKAQRXXXXXXXXXXXXXARNRWLEERVGRVFAIARSGDVDGMMRELRHNPDVLFMRDRHD-----------------RFKTLLHLAATSGSTSLLSLLDPLPEDVLVLDSDGCTPLHHAAASSKYDVVKFLASRANGRVSRSMR 1386 TVS AFR QL +L+A LR TEPHYIKCIKPN+ KAPGG+++ LV +QL YSGVLEVVRIRREA+P R + +F+ RF L +P+A T +A+E + +A +K +Q+G T+VFL+++G LR+ +R Y A+ IQA R K+ ++ AA V R + V + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + A + +W + E +R+A+E + + RV A + +++ + +AQR RNR L + +VF ARSGDV + R L P +LF+RDRHD + TLLH A G+ +++LL+P ++ D G T +H AAA YD++KFLA RAN V +++R Sbjct: 927 TVSNAFRSQLDDLVAQLRETEPHYIKCIKPNSDKAPGGWTSSLVIEQLRYSGVLEVVRIRREAFPMRVTYKQFYRRFGTL---------------LVSKDMPTADDVTSAKAREVGLGVCKAVFGEKEAGSSFQMGKTKVFLRDDGLKRLRAALRLHYFTIASKIQALWRGSLARAKIARQREAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVARQQVSVVKMQATWRGWRQREWRKREANATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAARKEVAILRKRKRVREETASTRIAAVWRGKSERLYGARRRAKERQAQTRVWA--LREEYLQE--EAMACRAQRSLRAFL--------RNRRLRDASIQVFQAARSGDVPTVARHLSEWPALLFLRDRHDGDAHAGMAEGGAEKRVPSYSTLLHAACQGGAIEVVALLEPFLSEITDKDRWGNTAVHVAAAECNYDLLKFLAHRANLEVRKAVR 1398
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: Myosin-like (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRG2_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.730e-34 Identity = 87/202 (43.07%), Postives = 119/202 (58.91%), Query Frame = 1 Query: 55 MSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVGXXXXXXXXXXLPSAAHATEEEAKEGCRTILEAFLPDKFYQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLKEKKAAAIVIHAAARRFVLRNRY 660 +S TVS FR QL+ L ATL+ATEPHYIKCIKPN +KA GGFS LV QQL YSGVLEVVRIRREAYP R PF +F+ RF++L + L S+A E + C+ I+ LP +Q+G ++FL++ G D+LR +R+ + AA IQA +R G + + A +++ R +LR ++ Sbjct: 763 ISGAFTVSCTFRRQLEELTATLKATEPHYIKCIKPNAIKAAGGFSPRLVVQQLRYSGVLEVVRIRREAYPTRIPFEDFYRRFDVLLGSCKPPT------------LRSSA-----EYRAACQAIVAKVLPVGGFQLGKRKIFLRDNGLDLLRDAIRDFFASHAARIQALIRGFLGVRRYIHTRKALLLLQRTVRMHLLRKKF 947
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ73_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.860e-31 Identity = 87/203 (42.86%), Postives = 113/203 (55.67%), Query Frame = 1 Query: 46 VSQMSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVGXXXXXXXXXXLPSAAHATEEEAKEGCRTILEAFLPDKF-YQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLKEKKAAAIVIHAAARRFVLR 651 V +++S TVS+ FR QL++L+ L ATEPHYIKCIKPNN+KAP G+S+ LV QQL YSGVLEVVRIRREA+P R F+EF+ RF L R A + A+ C I L YQ+G +VFLK++G D LR ++ Y A IQ R L+++ AAI + AR F+ R Sbjct: 759 VDKLASASTVSQTFRKQLESLVEQLSATEPHYIKCIKPNNMKAPSGWSSQLVIQQLRYSGVLEVVRIRREAFPTRITFVEFYRRFGQLINWRARGLAPPETIGADAARAAVLNSALADAARAACAEICAKALESTADYQLGTPKVFLKDDGLDRLRWALQQHYVAGATGIQRVWRGYAARKALQQQDKAAIRVQRIARGFIAR 961
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3H3_9STRA) HSP 1 Score: 129 bits (325), Expect = 6.160e-29 Identity = 80/200 (40.00%), Postives = 112/200 (56.00%), Query Frame = 1 Query: 52 QMSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVGXXXXXXXXXXLPSAAHATEEEAKEGCRTILEAFLPDKFYQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLKEKKAAAIVIHAAARRFVLR 651 Q++ TVS FR Q++NL TL AT+PHYIKCIKPNNVKA F LV QQL Y+GVLEVVRIRRE YP R + +F+ ++E+L R ++ +A A+E+ A +L+A +K +Q+G T +FL++ G D + + +R Y A+ I AC R M+ + AARR V+R Sbjct: 258 QLAGNKTVSLKFRQQVKNLCDTLTATQPHYIKCIKPNNVKAATAFGPRLVAQQLRYAGVLEVVRIRREGYPSRMNYFDFYAKYEMLIPYKERQAMKSVADCRAQGDAAAARAASEKIA----HLVLDASDAEKEFQLGGTLLFLRDNGLDKMDAAVREFYAGHASAINACARRFIAVMR-----------YRAARRRVIR 442
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQ11_9ARCH) HSP 1 Score: 127 bits (320), Expect = 1.150e-27 Identity = 77/183 (42.08%), Postives = 101/183 (55.19%), Query Frame = 1 Query: 55 MSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELL-----QRQLTRASVGXXXXXXXXXXLPSAAHATEE----EAKEGCRTILEAFLPDKFYQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQACVRAMQ 576 M+++ ++S FR QL NLM+TLR T PHYIKCIKPN K P + LV QQL YSGVLEVVRIRRE +P R F EF + LL +QL + + H +E E KE C IL+ L YQIGHT++FL+ +G ++ ++ Y + A +IQA R Q Sbjct: 733 MAASASISNQFRLQLDNLMSTLRNTTPHYIKCIKPNTTKQPQNIDSVLVLQQLRYSGVLEVVRIRREGFPLRLSFAEFLLHYHLLLPNSTYKQLIQEYLQAHPEQEEEEEAKVFKHVVDELSLEECKEYCVHILKFSLNSTQYQIGHTKIFLRHDGIQTMKDAIKRFYAKHAIVIQAYYRRFQ 915
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZTV9_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.520e-26 Identity = 75/170 (44.12%), Postives = 98/170 (57.65%), Query Frame = 1 Query: 55 MSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVGXXXXXXXXXXLPSAAHATEEEAKE--GCRTILEAFLPDKFYQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQA 558 M +++VS FR QL+ L TLR+T+PHYIKC+KPNNVKA G S HL+ QQL YSGVLEVVRIRREAYP R F E + F + L RAS+ P A +EA C+ + E FL +QIG T++FL+ ++L + KA +IQ+ Sbjct: 91 MMGSLSVSMRFREQLETLTQTLRSTQPHYIKCVKPNNVKAAGALSPHLIIQQLRYSGVLEVVRIRREAYPTRMRFSELHKVF----KTLIRASLDIQ---------PPALDQAPDEAVSLAACQRLAERFLEPDHFQIGKTKIFLRHGVMELLTRQQDAFFAGKATVIQS 247
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I0_ECTSI) HSP 1 Score: 123 bits (308), Expect = 3.890e-26 Identity = 73/167 (43.71%), Postives = 94/167 (56.29%), Query Frame = 1 Query: 94 QLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVGXXXXXXXXXXLPSAAHATEEEAKEGCRTILEAFLPDKFYQIGHTRVFLKEEGQDMLRSCMRNVYHRKAALIQACVRAMQGSMKLK 594 QL +L+ L TEPHYIKCIKPN+ KAPGG+S+ LV QL YSGVLEVVRIRREAYP R ++E + F +L ++ S +EEEA+ CR I L +Q+G TRVFLK+ D LR ++ Y A IQA R+ +L+ Sbjct: 830 QLDSLVMQLGQTEPHYIKCIKPNSAKAPGGWSSPLVIDQLRYSGVLEVVRIRREAYPLRLDYVEMYRNFRVLAEWKAGGTL-------------SPETCSEEEARVMCREICSFALEPDDFQLGRTRVFLKDNALDKLRWALQAKYVSAACSIQAAARSFLARNRLR 983
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7C8_HETAK) HSP 1 Score: 110 bits (275), Expect = 1.650e-25 Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 1 Query: 52 QMSSTVTVSKAFRGQLQNLMATLRATEPHYIKCIKPNNVKAPGGFSAHLVHQQLNYSGVLEVVRIRREAYPGRTPFLEFFERFELLQRQLTRASVG 339 Q++S ++VS FR QL +L+A L TE HY+KC++PNNVKAP GF++HL+ +QL YSGVLE++RIRREA+P R P+ EF RF+ L L RA G Sbjct: 19 QIASQLSVSYLFRSQLSDLVAQLARTETHYVKCLRPNNVKAPDGFNSHLILEQLRYSGVLELIRIRREAFPVRVPYAEFLRRFQALS--LIRAEPG 112 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9830.17841.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9830.17841.1 >prot_E_fasciculatus_S2_contig9830.17841.1 ID=prot_E_fasciculatus_S2_contig9830.17841.1|Name=mRNA_E_fasciculatus_S2_contig9830.17841.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=463bp QESRKPRNAASGGARVSQMSSTVTVSKAFRGQLQNLMATLRATEPHYIKCback to top mRNA from alignment at E_fasciculatus_S2_contig9830:181..5520+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9830.17841.1 ID=mRNA_E_fasciculatus_S2_contig9830.17841.1|Name=mRNA_E_fasciculatus_S2_contig9830.17841.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5340bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9830:181..5520+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9830:181..5520+ >mRNA_E_fasciculatus_S2_contig9830.17841.1 ID=mRNA_E_fasciculatus_S2_contig9830.17841.1|Name=mRNA_E_fasciculatus_S2_contig9830.17841.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1389bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9830:181..5520+ (Ectocarpus fasciculatus EfasUO2)back to top |