mRNA_E_fasciculatus_S2_contig983.17839.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig983.17839.1
Unique NamemRNA_E_fasciculatus_S2_contig983.17839.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig983.17839.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig983contigE_fasciculatus_S2_contig983:21713..24195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size433
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPUB domain
Ec32 orthologEc-01_007510.1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.0054836-CDS-E_fasciculatus_S2_contig983:21712..218081696842627.0054836-CDS-E_fasciculatus_S2_contig983:21712..21808Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 21713..21808 -
1696842627.016812-CDS-E_fasciculatus_S2_contig983:22473..225251696842627.016812-CDS-E_fasciculatus_S2_contig983:22473..22525Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 22474..22525 -
1696842627.0270486-CDS-E_fasciculatus_S2_contig983:22944..230251696842627.0270486-CDS-E_fasciculatus_S2_contig983:22944..23025Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 22945..23025 -
1696842627.0366676-CDS-E_fasciculatus_S2_contig983:23436..235521696842627.0366676-CDS-E_fasciculatus_S2_contig983:23436..23552Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 23437..23552 -
1696842627.0488288-CDS-E_fasciculatus_S2_contig983:24108..241951696842627.0488288-CDS-E_fasciculatus_S2_contig983:24108..24195Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig983 24109..24195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig983.17839.1prot_E_fasciculatus_S2_contig983.17839.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig983 21713..24195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig983.17839.1

>prot_E_fasciculatus_S2_contig983.17839.1 ID=prot_E_fasciculatus_S2_contig983.17839.1|Name=mRNA_E_fasciculatus_S2_contig983.17839.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=144bp
MLSQEDGTAVLLLDPLTDHGRKCAEVTLHRLKSIRARRRGAGGVAGAATG
APAASHPDAGTEPRPREVSRGHGSGTMTCEACGKSPLLEDTHSNRPDVLY
RSRRPNFAVTCKVCKGYLICGDCFNRQSYQHAPDHQARKRTKRH
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mRNA from alignment at E_fasciculatus_S2_contig983:21713..24195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig983.17839.1 ID=mRNA_E_fasciculatus_S2_contig983.17839.1|Name=mRNA_E_fasciculatus_S2_contig983.17839.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2483bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:21713..24195- (Ectocarpus fasciculatus EfasUO2)
ATGCTGAGCCAGGAGGACGGTACGGCGGTGCTGCTGCTGGACCCTTTGAC
GGACCATGGTAGAAAGTGTGCCGAGGTCACTCTGCACGTGAGTTCGTACG
TGATGGTTGTGGTTTGGTGGATTCATTGGGCGCCATACTAAAACGGGATA
GGTTGAATGAAAGGGGACATGCAAGGAGCAGGTTGATGTGCCAACTTTGG
AGCTGATCGCTGAAATGGCGACGGGCGAGTGCGTCTGAACGATGGCTGTA
TGCCTTGGTATTGTAGAGTACATATTTTTGCCGGTTTGATGCAGAGTCAG
ATGGTTCACAGGCCTCCTTCTGGTGATCTCATTGACGTCGCGGAGGACGT
AAACCACCCCTGTCAAAGAATGCCTGCATCGTGCATGCACGCGTTGTGGT
TCGCAATATGTTGGTTGGAACCAATTGTCCGATCTCGACGAGCTGCATGT
GTCTTCGCAGGCGTTTTGTGTGATTTCCTCGAGAGACAATAGCAAGATCC
CATTGATGCGTTGGTCCTGACATTGGTCCCTTGACGTGTGGGTACCTGAG
ATGCTCAAGCCTCAGTTCTCTGGCGTTGATGTTGCACGTCACGAAACTAC
CCCTACGCGTGCGGTTTACCGCGTCTTCGCTTGATACCGACAGCGTCTTA
AGAGCATACGGGCGCGCCGTCGAGGGGCTGGTGGAGTAGCGGGTGCAGCC
ACGGGGGCACCGGCAGCCTCGCATCCTGATGCTGGCACGGAGCCAAGGCC
GCGCGAGGTGTGGATCGCAGAATTCGAGAGGCATTCTGTGGCGCTCATAT
GCCTCGGGCTTGAGAAAGTTTCCAACCAGAACCCAAAGAACGTAATGCGG
AAACCTAGCGTTAATGGATGCAAGATTGTGGTGTGTTTTCGTCCACAAGC
CTCCTGGCTGTTGTGCCGCGGCTCATTCGAACGAAACACTGAAACAGGCA
TCCATCGGGTTAGTCTTGTCGACTGCCTCTTGTTTTACTGTATATGTGCA
ACCCGTTCAGTGCTACTGCAGTTCTCGGTTTGACTGCCCAGCACAACAGG
CTGGGCTTGCTTGGCTTACAAACTGACGCCTCTCGTAAGGGAAGGCATAT
TGATTGCGACCGGGTAACACCACCTTGTGCTTGGACTCCGATCGTCTCAC
CACGCCCTACAGGCGAGCAGGTCGAGGGGTCACGGCAGCGGAACGATGAC
CTGCGAGGCTTGCGGCAAGAGCCCACTGCTGGAGGATACGCACTCCAACA
GGTAAGGGTCGCGTGAGTAATATTGTTCTGCCCGAACGGAAGCAGGAGGG
GTTTTGCGTGCGTTGGGCCCAGGCGCGCTGCACCGCAGGCATCATCAAGG
AGGCAAGGGGGCACACTATACCTTTGACGGCTTTCCCATTCTGCATGATG
CAGGAGTAATAGGCACCTGATCACAGGGAGAAGGGGGGAGGCCGACTCAT
TCATAGAGTTGTGGTTGACCTACGCAACCTCTCATCTTTTGGCGACAAGC
GTCGGAGCGATTGATCGGAACACCAGCAGATATGAGATGATGGTAAAATG
CGCGTCCACATGCACATCAGTCGGCATGCGTTGTTGCCCTTTTCCTACCG
TCGCGTCTCCTCTCACGCTTCCCTCTCCTGCTTGTGTGTGTTCCGACGGC
GTGTAACCACGAAACGGCAGACCGGACGTCCTGTACCGTTCGCGAAGGCC
GAACTTTGCCGTCACGTGCAAGGTGTGCGACGAAGAATCTGAGATCGCGT
ACATTGTCAATATTTGTTGGACACGTACGCTTACGCTTACCGCACCATGT
TTGGTGTGCGACGAGGATCCTAAGATACACTGTCAATGACTGCACAACAG
TTACGCCTGCCGCACCATGTTTGTTGCCACCGCGATCACCTGGACCGCAT
CGGTATTGAAAGCGGGAATTTTAGTGGACCTAGAAGTATGTCCTTTGAGA
GGCGGCCGAGAGAGCTCGCGACAGAGCCTTTGTGTAGAGTCGCCTGTGTA
CATGTACCCGCTACTTTGGTATTACTCGTAGATGTCGGGCGAATACGAGA
GAAGGTTTGGAGTTCGAATTCATTTGTTCAGGTTGTTGCTCGAGATTACT
TGTGGGGAGCGAAACGATGGTTTAGAGTGCCAACTAGTTTGTACGGAAAA
GGTTGGAAGGATAGGCCCTGTGTGTTCGTGTAGTTTCAACGTAGATACGC
GGATCTGTGGTTACGAAGTTTTTTGTTCAGATTTTTGTCGACTATCGAGA
TGTGAGCAATTGTAATGCAGCCTGGCCGTATTATGACCGGGGGTGGCGCT
ATCCGCGGACATACGGTGCTCTGCTGCTCGATGTCTCTGCACAGTAAGCG
ACTAGTGCATAATGTTTTGTACCAATTTCGTTTCCAGGTGTGCAAAGGGT
ACCTCATCTGTGGAGACTGCTTCAACAGGCAATCTTATCAGCACGCGCCA
GATCACCAGGCAAGAAAACGCACCAAACGCCAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig983:21713..24195-

>mRNA_E_fasciculatus_S2_contig983.17839.1 ID=mRNA_E_fasciculatus_S2_contig983.17839.1|Name=mRNA_E_fasciculatus_S2_contig983.17839.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:21713..24195- (Ectocarpus fasciculatus EfasUO2)
ATGCTGAGCCAGGAGGACGGTACGGCGGTGCTGCTGCTGGACCCTTTGAC
GGACCATGGTAGAAAGTGTGCCGAGGTCACTCTGCACCGTCTTAAGAGCA
TACGGGCGCGCCGTCGAGGGGCTGGTGGAGTAGCGGGTGCAGCCACGGGG
GCACCGGCAGCCTCGCATCCTGATGCTGGCACGGAGCCAAGGCCGCGCGA
GGTGTCGAGGGGTCACGGCAGCGGAACGATGACCTGCGAGGCTTGCGGCA
AGAGCCCACTGCTGGAGGATACGCACTCCAACAGACCGGACGTCCTGTAC
CGTTCGCGAAGGCCGAACTTTGCCGTCACGTGCAAGGTGTGCAAAGGGTA
CCTCATCTGTGGAGACTGCTTCAACAGGCAATCTTATCAGCACGCGCCAG
ATCACCAGGCAAGAAAACGCACCAAACGCCAT
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