mRNA_E_fasciculatus_S2_contig983.17834.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI) HSP 1 Score: 173 bits (439), Expect = 1.370e-53 Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1 Query: 124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 +++VPGIAARGAEIL DGEGDDKVTNTYQLIGKFLALRGPD+TDHEV DSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPG D Sbjct: 30 LTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEV--DSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGIYD 118
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.950e-31 Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1 Query: 124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 +++VPGI + L GEG +KV NTYQLIGKFL+L+G D D + ++EHCD+FWYWL+ GI+S RSGIVNAIAEK NTWIPG D Sbjct: 31 LTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGD--DSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTWIPGIYD 119
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC) HSP 1 Score: 111 bits (277), Expect = 6.230e-29 Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1 Query: 124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 +++VPGI A+ L +GE D+ +TNTYQLIGKFL L+GPD D+ +V+S+EHC+KFWYWLQ K I+++RS IV AIA KVN +PG D Sbjct: 30 ITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDN--KVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPGVYD 118
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CF00_THAPS) HSP 1 Score: 110 bits (275), Expect = 7.890e-29 Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1 Query: 124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 +++VPGI A+ L + EG++ +TNTYQLIGKFL L+GPD TD +V+S EHC+KFWYWLQA GI+++RS IV AIA+KVN +PG D Sbjct: 13 ITEVPGIGPAAAKKLANVEGEEGITNTYQLIGKFLMLKGPD-TDTN-KVESFEHCEKFWYWLQAMGISAHRSAIVKAIAQKVNGLLPGVYD 101
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V0_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.020e-28 Identity = 50/91 (54.95%), Postives = 69/91 (75.82%), Query Frame = 1 Query: 124 MSKVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 +++VPGI A L + D+ +TN++QLIGKFL ++GPD + EV D V HC+KFWY+L++KG+NS+RSGIV+AIAEK+NT IPG D Sbjct: 29 ITQVPGIGKAAAAALASADDDEPITNSFQLIGKFLLMKGPDTEEGEV--DCVMHCNKFWYYLKSKGVNSHRSGIVHAIAEKINTMIPGIYD 117
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQ62_9STRA) HSP 1 Score: 109 bits (272), Expect = 5.460e-28 Identity = 57/95 (60.00%), Postives = 73/95 (76.84%), Query Frame = 1 Query: 124 MSKVPGI---AARGAEILGDGEGD-DKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 ++ VPGI AAR +GD E D D++TNTYQLIGKFL L+GPD+ H +V+S+EH +KFW++L+ KGI+S+RSGIV AIAEKVNT IPG D Sbjct: 38 LTDVPGIGPAAARKLGEIGDEEKDSDRITNTYQLIGKFLMLKGPDEDGH--KVESMEHMEKFWWFLKEKGISSHRSGIVRAIAEKVNTMIPGIYD 130
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Z2B1_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.140e-27 Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 1 Query: 124 MSKVPGIAARGAEILG---DGEGD-DKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 ++ VPGI A+ LG DGE + D+VTNTYQLIGKFL L+GPD+ + +V+SVEH +KFW++L+ KGI+S+RSGIV AIAEKVNT +PG D Sbjct: 29 LTDVPGIGPAAAKKLGQIGDGETEFDRVTNTYQLIGKFLMLKGPDEDGN--KVESVEHMEKFWWYLKQKGISSHRSGIVRAIAEKVNTMLPGIYD 121
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.420e-27 Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1 Query: 124 MSKVPGIAARGAEILGDGEGD-DKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 +++VPGI L G+ + D++TNT+QLIGKFL L+GPD+ D +++D +EH +KFWYWL+ KGI S+RS IV AI EK+NT IPG D Sbjct: 31 VTEVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDD--MKIDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINTMIPGIYD 120
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Uncharacterized (protein AlNc14C194G8527 n=2 Tax=Albugo TaxID=65356 RepID=F0WQ47_9STRA) HSP 1 Score: 103 bits (257), Expect = 5.770e-26 Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1 Query: 130 KVPGIAARGAEILGDGEGDDKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 +VPGI + L GE +D+V NTYQLIGKFL L+ D+ + E ++ HCD FWYWL++K I + RSGIV AIAEKVNT +PG D Sbjct: 31 EVPGIGSAAISKLASGEEEDRVCNTYQLIGKFLMLKKNDEENEEELIECSAHCDAFWYWLKSKQITAYRSGIVMAIAEKVNTMLPGIYD 119
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKZ8_9STRA) HSP 1 Score: 103 bits (257), Expect = 7.030e-26 Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 1 Query: 106 TPNSLFMSKVPGIAARGAEILGDGEGD-DKVTNTYQLIGKFLALRGPDQTDHEVRVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGECD 396 TP + + VPGI + L D + D++TNTYQL GKFL L+GP +D E+ +DS+EH +KFW+WL+ +G+N++RS IV A+AEK T+ G D Sbjct: 23 TPTTADLQSVPGIGPATIKKLKDASTEEDRITNTYQLFGKFLMLKGPGHSDDEIEIDSIEHMEKFWHWLKNRGVNTHRSAIVKAVAEKSATFFQGIYD 120 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig983.17834.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig983.17834.1 >prot_E_fasciculatus_S2_contig983.17834.1 ID=prot_E_fasciculatus_S2_contig983.17834.1|Name=mRNA_E_fasciculatus_S2_contig983.17834.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=133bp FVSINLPHGFLLLHSYHEPPRPPPPPPPPSSRSFFTPNSLFMSKVPGIAAback to top mRNA from alignment at E_fasciculatus_S2_contig983:30..601+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig983.17834.1 ID=mRNA_E_fasciculatus_S2_contig983.17834.1|Name=mRNA_E_fasciculatus_S2_contig983.17834.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=572bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:30..601+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig983:30..601+ >mRNA_E_fasciculatus_S2_contig983.17834.1 ID=mRNA_E_fasciculatus_S2_contig983.17834.1|Name=mRNA_E_fasciculatus_S2_contig983.17834.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=399bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig983:30..601+ (Ectocarpus fasciculatus EfasUO2)back to top |