mRNA_E_fasciculatus_S2_contig9825.17830.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI) HSP 1 Score: 162 bits (411), Expect = 3.450e-49 Identity = 87/123 (70.73%), Postives = 98/123 (79.67%), Query Frame = 1 Query: 1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCLHTTRFTLAWPSVYICLHMRARS 369 MCRVMGGDL+LL+EIEQNN+TWRSVEGG +IQQALIEPIEY+ VE+S VKEC VRDALA LVGGE EVETPAG+IDVLSGTEVIEVKYYKQW G+ L F PS+ LH+ A + Sbjct: 1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFH---PSLAKRLHLFAHA 120
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.860e-34 Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 1 Query: 1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303 +CRVMGGDLSL R+IEQN + W VEGG++IQQAL+ P++YKE ++RV+EC VRDALA LVGG EVETP+G IDVLS TEVIEVKYY+QW G+ L Sbjct: 233 ICRVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLRPVKYKENCVTERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVL 333
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE) HSP 1 Score: 130 bits (328), Expect = 9.770e-33 Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 1 Query: 1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCLHTTRFTLAWPSVYICLHMRARSV 372 +CRVMGGDLSL R+IEQN + W V+GG++IQQAL+ P++ E ++RV+EC VRDALAF+VGG EVETP+G IDVLS TEVIEVKYY+ W G+ L + +P + LH+ A SV Sbjct: 667 ICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLRPVKNIEDCVTERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLP---YQSHYPRLSRRLHLFAHSV 787
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI) HSP 1 Score: 122 bits (307), Expect = 7.930e-32 Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 1 Query: 1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCLHTTRFTLAWPSVYICLHMRAR 366 M RVMGGDL LLR IE+NN+ W SV+GG+ IQ+ALIEPI++ E S RV+E +VRDALA +VGG+ E ETP G IDVLS TEVIEVK+Y W G+ L R +P + LH+ A+ Sbjct: 2 MYRVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPIDHTEKYVSGRVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRH---YPHLDKRLHLFAQ 120
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI) HSP 1 Score: 103 bits (257), Expect = 2.970e-25 Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1 Query: 13 MGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303 M GDL L R+IEQNN+ SVEGG++I+QAL++P+EY+E S RVKE + R+ALA L+GGE EVETP+G ID S VIEVKY+ +W G+ L Sbjct: 1 MRGDLGLCRQIEQNNLVRGSVEGGEAIRQALLQPVEYREDGESTRVKESSAREALASLIGGEREVETPSGFIDKPSDA-VIEVKYHNRWKDGLGQVL 96
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 (n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM53_9PHYC) HSP 1 Score: 92.8 bits (229), Expect = 1.160e-19 Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1 Query: 1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVE---RSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQW 279 +CRV+GGDL L +I +N WR EGG I++ LI P++ E+E S E VRDALA GG EV TP+G IDVL+ EVIEVKYY++W Sbjct: 246 LCRVLGGDLDLCEDINENYECWRVAEGGAEIREDLIAPVQPVELEATRESSCYPEIKVRDALALSQGGRTEVCTPSGRIDVLTSREVIEVKYYQKW 341
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC) HSP 1 Score: 85.5 bits (210), Expect = 5.050e-17 Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1 Query: 1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303 MCR++GGDL L I +N + W S + ++Q LI P+E+ E+ + E +RD LA +GG+ EV TP G IDVL+ TEVIEVK+Y+ + G+ + Sbjct: 239 MCRIIGGDLRLQATINKNYLEWTSAPELEKVRQDLIAPLEHFELYKKRSGHEAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVM 339
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 ((Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.110e-15 Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1 Query: 1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYK---------EVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303 +CR+MG D+ ++ E+E N W++ +QQAL+ + + ++ R V+E VRD LA + G E+ETPAG DV++ TEVI+VK ++ W G+ L Sbjct: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVL 110
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 2.200e-13 Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1 Query: 64 WRSV-EGGQSIQ-------QALIEPIEYKEVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303 W SV E G++++ +AL +EYK +VKE +VRDALA +VGGE E ETP G IDVLS TEVIEVKYYKQW G+ L Sbjct: 170 WESVGEEGRTVECISPRLMKALNRRVEYKP--ELFKVKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVL 255
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Match: FirrV-1-A34 ((Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY8_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.000e-11 Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 1 MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALI--EPIEYK--EVERSDRVKECAVRDALAFLVGGEAEVETPAGSIDVLSGTEVIEVKYYKQWSMDSGRCL 303 +CR+M GD+ ++ E+ N W++ +Q+ L+ PI + + D +E VRD LA + G EV+ AG DV++ TEVIE+K+++ W G+ L Sbjct: 1 VCRLMSGDMKIIAEVAVRNAWWQATPARCEVQRTLLASSPISAHSDDADSDDTTRERDVRDELALALAGNIEVQMSAGFADVVTATEVIEIKHWRTWKHALGQVL 105 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9825.17830.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9825.17830.1 >prot_E_fasciculatus_S2_contig9825.17830.1 ID=prot_E_fasciculatus_S2_contig9825.17830.1|Name=mRNA_E_fasciculatus_S2_contig9825.17830.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=130bp MCRVMGGDLSLLREIEQNNMTWRSVEGGQSIQQALIEPIEYKEVERSDRVback to top mRNA from alignment at E_fasciculatus_S2_contig9825:2130..2519- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9825.17830.1 ID=mRNA_E_fasciculatus_S2_contig9825.17830.1|Name=mRNA_E_fasciculatus_S2_contig9825.17830.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9825:2130..2519- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9825:2130..2519- >mRNA_E_fasciculatus_S2_contig9825.17830.1 ID=mRNA_E_fasciculatus_S2_contig9825.17830.1|Name=mRNA_E_fasciculatus_S2_contig9825.17830.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9825:2130..2519- (Ectocarpus fasciculatus EfasUO2)back to top |