mRNA_E_fasciculatus_S2_contig9818.17825.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9818.17825.1
Unique NamemRNA_E_fasciculatus_S2_contig9818.17825.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9818.17825.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD53_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 3.310e-43
Identity = 103/124 (83.06%), Postives = 105/124 (84.68%), Query Frame = -1 
Query:  511 QQFYCLMNTWNESLASCSAPQENQYTVDALFPSPEPARPDSDHDXXXXXXXXXXXXGHGMHRRDGGDSDYEGGGRPSGMYDPYGYGEYNHEVSPGARHGASSRAGXXXXXXAAEREGWYQRDEY 882
            QQFYCLMNTWNESLASCSAPQENQYTVDALFP PEPAR      XXXXXXXXXXXXG  M+RRDGGDSDYEGGGRPS MYD   YGEYN+E SPG RHGASSRAG XXXXX AEREGWY  DEY
Sbjct:  224 QQFYCLMNTWNESLASCSAPQENQYTVDALFPPPEPARXXXXXXXXXXXXXXXXXXG--MNRRDGGDSDYEGGGRPSSMYD---YGEYNYEFSPGMRHGASSRAGGXXXXXXAEREGWYHGDEY 342
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BLAST of mRNA_E_fasciculatus_S2_contig9818.17825.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.470e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = -1 
Query:  778 QQFYCLMNTWNESLASCSAPQENQYTVDALFPSPE 882
            QQFYCLMNTWNESLASCSAPQENQYTV+ALFP PE
Sbjct:  410 QQFYCLMNTWNESLASCSAPQENQYTVEALFPPPE 444
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9818.17825.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.310e-4383.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.470e-1294.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9818contigE_fasciculatus_S2_contig9818:3868..4749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size884
Hectar predicted targeting categoryother localisation
Exons1
Cds size882
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842625.6312501-CDS-E_fasciculatus_S2_contig9818:3867..47491696842625.6312501-CDS-E_fasciculatus_S2_contig9818:3867..4749Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9818 3868..4749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9818.17825.1prot_E_fasciculatus_S2_contig9818.17825.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9818 3868..4749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9818.17825.1

>prot_E_fasciculatus_S2_contig9818.17825.1 ID=prot_E_fasciculatus_S2_contig9818.17825.1|Name=mRNA_E_fasciculatus_S2_contig9818.17825.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=294bp
GDASPPHPNPPPHSRVLKRLDQKTLNLMPAAAAAEFGPHQSKGTVDESKR
CRFPKPKRNHQHHSRQRKAPTAPTYPTEIRRSVSQGDAIPRGASQVGWPS
SLPFSTLLPSKKVKTHHHQRQRLTPPLRPPSTREPNLTPRQTQQQQQRRP
LRRRMGAADVSLPPEDPYDSVFVALVPSLALGRPPSSPPPRSGRSAVPGA
GADLVVVLTIAVRVVHAAWPPSPLVVAVAAITTVHAVAGGGGGGIVVVLL
VVVAVGAGWLRGGEERIDGVLVLLRCGAARQRLVPRVHEAVELL
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mRNA from alignment at E_fasciculatus_S2_contig9818:3868..4749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9818.17825.1 ID=mRNA_E_fasciculatus_S2_contig9818.17825.1|Name=mRNA_E_fasciculatus_S2_contig9818.17825.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=882bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9818:3868..4749+ (Ectocarpus fasciculatus EfasUO2)
GGAGATGCCTCCCCCCCCCACCCTAACCCCCCCCCCCATTCCAGAGTTTT
AAAACGTTTAGACCAGAAAACGTTAAATTTAATGCCGGCTGCGGCGGCCG
CGGAATTCGGACCGCACCAATCCAAGGGCACTGTGGACGAGAGCAAGCGA
TGCAGATTTCCGAAGCCTAAGAGGAACCATCAGCACCATTCACGGCAGCG
GAAAGCACCAACTGCACCCACCTACCCCACCGAAATTCGACGCTCGGTCT
CACAAGGGGACGCGATTCCACGCGGCGCTAGCCAGGTGGGATGGCCGTCT
TCGCTGCCGTTTTCCACGCTTCTTCCATCGAAAAAAGTCAAGACGCACCA
CCACCAACGACAGCGCTTGACGCCGCCGCTTCGCCCGCCTAGCACCCGCG
AACCAAATCTCACGCCCCGGCAGACACAACAGCAGCAGCAGCGGCGGCCG
CTTCGGCGGCGAATGGGGGCAGCGGATGTCAGCTTGCCCCCCGAAGACCC
TTATGATTCAGTATTCGTCGCGTTGGTACCATCCCTCGCGCTCGGCCGCC
CGCCCTCCTCCCCGCCCCCCCGCTCTGGAAGAAGCGCCGTGCCTGGCGCC
GGGGCTGACCTCGTGGTTGTACTCACCATAGCCGTACGGGTCGTACATGC
CGCTTGGCCTCCCTCCCCCCTCGTAGTCGCTGTCGCCGCCATCACGACGG
TGCATGCCGTGGCCGGCGGCGGCGGCGGCGGCATCGTCGTCGTCCTCCTC
GTCGTGGTCGCTGTCGGGGCGGGCTGGCTCCGGGGAGGGGAAGAGCGCAT
CGACGGTGTACTGGTTCTCCTGCGGTGCGGAGCAGCTCGCCAGAGACTCG
TTCCACGTGTTCATGAGGCAGTAGAATTGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9818:3868..4749+

>mRNA_E_fasciculatus_S2_contig9818.17825.1 ID=mRNA_E_fasciculatus_S2_contig9818.17825.1|Name=mRNA_E_fasciculatus_S2_contig9818.17825.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=882bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9818:3868..4749+ (Ectocarpus fasciculatus EfasUO2)
GGAGATGCCTCCCCCCCCCACCCTAACCCCCCCCCCCATTCCAGAGTTTT
AAAACGTTTAGACCAGAAAACGTTAAATTTAATGCCGGCTGCGGCGGCCG
CGGAATTCGGACCGCACCAATCCAAGGGCACTGTGGACGAGAGCAAGCGA
TGCAGATTTCCGAAGCCTAAGAGGAACCATCAGCACCATTCACGGCAGCG
GAAAGCACCAACTGCACCCACCTACCCCACCGAAATTCGACGCTCGGTCT
CACAAGGGGACGCGATTCCACGCGGCGCTAGCCAGGTGGGATGGCCGTCT
TCGCTGCCGTTTTCCACGCTTCTTCCATCGAAAAAAGTCAAGACGCACCA
CCACCAACGACAGCGCTTGACGCCGCCGCTTCGCCCGCCTAGCACCCGCG
AACCAAATCTCACGCCCCGGCAGACACAACAGCAGCAGCAGCGGCGGCCG
CTTCGGCGGCGAATGGGGGCAGCGGATGTCAGCTTGCCCCCCGAAGACCC
TTATGATTCAGTATTCGTCGCGTTGGTACCATCCCTCGCGCTCGGCCGCC
CGCCCTCCTCCCCGCCCCCCCGCTCTGGAAGAAGCGCCGTGCCTGGCGCC
GGGGCTGACCTCGTGGTTGTACTCACCATAGCCGTACGGGTCGTACATGC
CGCTTGGCCTCCCTCCCCCCTCGTAGTCGCTGTCGCCGCCATCACGACGG
TGCATGCCGTGGCCGGCGGCGGCGGCGGCGGCATCGTCGTCGTCCTCCTC
GTCGTGGTCGCTGTCGGGGCGGGCTGGCTCCGGGGAGGGGAAGAGCGCAT
CGACGGTGTACTGGTTCTCCTGCGGTGCGGAGCAGCTCGCCAGAGACTCG
TTCCACGTGTTCATGAGGCAGTAGAATTGCTG
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