mRNA_E_fasciculatus_S2_contig9815.17823.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9815.17823.1
Unique NamemRNA_E_fasciculatus_S2_contig9815.17823.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9815.17823.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G605_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.290e-10
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:  235 AKKSVANATEALKPEGLDALHVEDVTVLQGCPAGHRDLSPSPD 363
            AKKSVANATEALK  GLDAL  EDVTVL+G PAGHRDL+PSPD
Sbjct:  170 AKKSVANATEALKQAGLDAL--EDVTVLEGRPAGHRDLNPSPD 210
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BLAST of mRNA_E_fasciculatus_S2_contig9815.17823.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G077_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.400e-10
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:  235 AKKSVANATEALKPEGLDALHVEDVTVLQGCPAGHRDLSPSPD 363
            AKKSVANATEALK  GLDAL  EDVTVL+G PAGHRDL+PSPD
Sbjct:  170 AKKSVANATEALKQAGLDAL--EDVTVLEGRPAGHRDLNPSPD 210
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9815.17823.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN86_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.140e-10
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  244 SVANATEALKPEGLDALHVEDVTVLQGCPAGHRDLSPSPD 363
            SVANATEALK EGLDAL  EDVTVL+G PAGHRDL PSPD
Sbjct:    8 SVANATEALKQEGLDAL--EDVTVLRGRPAGHRDLKPSPD 45
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BLAST of mRNA_E_fasciculatus_S2_contig9815.17823.1 vs.
Match: SET (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX16_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.800e-9
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  244 SVANATEALKPEGLDALHVEDVTVLQGCPAGHRDLSPSPD 363
            SVANATEALK EGLDAL  EDVTVL+G PAGHRDL PSPD
Sbjct:  186 SVANATEALKQEGLDAL--EDVTVLRGRPAGHRDLKPSPD 223
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9815.17823.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.000e-6
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  217 RTRVAKAKKSVANATEALKPEGLDALHVEDVTVLQGCPAGHRDLSPSPD 363
            RTR A+ KKSVANAT ALK EGL+AL   DVT L   PAGHRDL PSPD
Sbjct:   85 RTR-AQGKKSVANATRALKEEGLNALM--DVTYLPERPAGHRDLQPSPD 130
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9815.17823.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.040e-6
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:  235 AKKSVANATEALKPEGLDALHVEDVTVLQGCPAGHRDLSPSPD 363
            A +SVANA +A K EGLDAL  EDVTVLQG  AGHRDL+PSPD
Sbjct:  857 ANQSVANAKKAPKQEGLDAL--EDVTVLQGRLAGHRDLNPSPD 897
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9815.17823.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized2.290e-1083.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.400e-1083.72protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.140e-1085.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
SET2.800e-985.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.000e-671.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.040e-674.42protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9815contigE_fasciculatus_S2_contig9815:1148..2045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size364
Hectar predicted targeting categorymitochondrion
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842625.5185797-CDS-E_fasciculatus_S2_contig9815:1147..13811696842625.5185797-CDS-E_fasciculatus_S2_contig9815:1147..1381Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9815 1148..1381 +
1696842625.535225-CDS-E_fasciculatus_S2_contig9815:1915..20441696842625.535225-CDS-E_fasciculatus_S2_contig9815:1915..2044Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9815 1916..2044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9815.17823.1prot_E_fasciculatus_S2_contig9815.17823.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9815 1148..2044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9815.17823.1

>prot_E_fasciculatus_S2_contig9815.17823.1 ID=prot_E_fasciculatus_S2_contig9815.17823.1|Name=mRNA_E_fasciculatus_S2_contig9815.17823.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=121bp
RSVNTHLARRRLCYTNSLAPSPKARVKSAATWICFYQVTRRPRQHELHMS
TRRSNRDKNTHQKNESQQAKCQRTRVAKAKKSVANATEALKPEGLDALHV
EDVTVLQGCPAGHRDLSPSPD
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mRNA from alignment at E_fasciculatus_S2_contig9815:1148..2045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9815.17823.1 ID=mRNA_E_fasciculatus_S2_contig9815.17823.1|Name=mRNA_E_fasciculatus_S2_contig9815.17823.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=898bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9815:1148..2045+ (Ectocarpus fasciculatus EfasUO2)
AGGAGTGTCAACACGCACTTGGCACGGCGAAGGCTATGTTACACGAACAG
TCTGGCTCCAAGTCCGAAGGCGAGAGTGAAGAGTGCGGCGACTTGGATCT
GCTTCTATCAAGTCACCCGGAGGCCGAGACAACACGAACTACACATGTCG
ACGAGGCGGAGCAACCGCGACAAAAACACACACCAGAAAAACGAGTCGCA
GCAAGCAAAATGCCAGCGAACTAGAGTGGCAAAGGTGATCACTGGAACAT
GAGTCGGGCCACCTCCTTACATATTATGAGGGACGAAACAGCACATCGGA
ACCACAAACTTCGGCTCGGAACCACTTCTCAGCACATGACCAACTCGCCA
TGTCGTAGAAGAGGAACTCCGAGCAGCCGAAGACGTCGTCCCACGGTTAG
GGCCCCTCGATCCCGTTGCCGCCGTAGTGCTTGGCTAGCCTAAGCACCGG
AGCCAGGGCCTTGTCGGAGAGCTTAGACTTCATGTCGTCGGACTAGACGA
CACACAGGACGGCGGTACAATAGGCAAGGGAAGGGGACGCTATGCGCTGT
TGGCATCAGCTCTCGCGGGATGGAGTGAACGCCCGACGTTGCCCCTAGCG
CCAGAAAGGAAAATGACACGAACAATATACCCTGCTATCTTCTCTGTGCA
AATCGGTCGACGACAAAATGTTATGATAGTTATATTCCATTCCATGCATG
CATGTTGCTATCGTCAGAGATGCAATAATCCCATTTTCGGAACCACACTA
TTTTCCACGTATGCGCAGGCCAAGAAGTCGGTTGCCAATGCGACTGAAGC
CCTCAAGCCGGAAGGACTCGACGCTCTACATGTAGAGGACGTCACGGTGC
TTCAGGGATGCCCAGCCGGACATCGCGACCTCAGCCCCTCACCGGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9815:1148..2045+

>mRNA_E_fasciculatus_S2_contig9815.17823.1 ID=mRNA_E_fasciculatus_S2_contig9815.17823.1|Name=mRNA_E_fasciculatus_S2_contig9815.17823.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=363bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9815:1148..2045+ (Ectocarpus fasciculatus EfasUO2)
AGGAGTGTCAACACGCACTTGGCACGGCGAAGGCTATGTTACACGAACAG
TCTGGCTCCAAGTCCGAAGGCGAGAGTGAAGAGTGCGGCGACTTGGATCT
GCTTCTATCAAGTCACCCGGAGGCCGAGACAACACGAACTACACATGTCG
ACGAGGCGGAGCAACCGCGACAAAAACACACACCAGAAAAACGAGTCGCA
GCAAGCAAAATGCCAGCGAACTAGAGTGGCAAAGGCCAAGAAGTCGGTTG
CCAATGCGACTGAAGCCCTCAAGCCGGAAGGACTCGACGCTCTACATGTA
GAGGACGTCACGGTGCTTCAGGGATGCCCAGCCGGACATCGCGACCTCAG
CCCCTCACCGGAC
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