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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9810.17817.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN4_ECTSI) HSP 1 Score: 122 bits (305), Expect = 9.930e-31 Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 1 Query: 1 PQNPDYKDSGVSHQTAQLNRYLPKPKNKDGHYLVDSKKSAADAAVEKEKRELDEKEAAVALAGADRE 201
P +PDYKDSGVSHQTAQLNRYLPKPKNKDGHYLVDSKKSAADAAVEKE++ELDEKEAAVALAGADRE
Sbjct: 229 PNDPDYKDSGVSHQTAQLNRYLPKPKNKDGHYLVDSKKSAADAAVEKERKELDEKEAAVALAGADRE 295
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 0 |
| Seed ortholog score | 124.8 |
| Seed ortholog evalue | 1.6e-26 |
| Seed eggNOG ortholog | 2880.D8LIN4 |
| Model size | 205 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| EggNOG free text desc. | apoptotic process |
| EggNOG OGs | KOG2489@1,KOG2489@2759 |
| Cds size | 204 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842624.9456055-CDS-E_fasciculatus_S2_contig9810:270..474 | 1696842624.9456055-CDS-E_fasciculatus_S2_contig9810:270..474 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9810 271..474 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9810.17817.1 >prot_E_fasciculatus_S2_contig9810.17817.1 ID=prot_E_fasciculatus_S2_contig9810.17817.1|Name=mRNA_E_fasciculatus_S2_contig9810.17817.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
PQNPDYKDSGVSHQTAQLNRYLPKPKNKDGHYLVDSKKSAADAAVEKEKR
ELDEKEAAVALAGADREA back to topmRNA from alignment at E_fasciculatus_S2_contig9810:271..475+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9810.17817.1 ID=mRNA_E_fasciculatus_S2_contig9810.17817.1|Name=mRNA_E_fasciculatus_S2_contig9810.17817.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=205bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9810:271..475+ (Ectocarpus fasciculatus EfasUO2)
CCCCAGAACCCCGATTACAAGGACTCGGGAGTCTCCCACCAGACCGCCCA
GCTCAACAGGTATCTCCCCAAGCCTAAGAACAAGGACGGGCACTACCTCG
TAGACTCCAAGAAGTCTGCCGCGGACGCCGCGGTGGAGAAGGAGAAGAGG
GAGTTGGACGAGAAGGAGGCGGCGGTGGCCTTGGCGGGGGCGGACAGAGA
GGCGG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9810:271..475+ >mRNA_E_fasciculatus_S2_contig9810.17817.1 ID=mRNA_E_fasciculatus_S2_contig9810.17817.1|Name=mRNA_E_fasciculatus_S2_contig9810.17817.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9810:271..475+ (Ectocarpus fasciculatus EfasUO2)
CCCCAGAACCCCGATTACAAGGACTCGGGAGTCTCCCACCAGACCGCCCA
GCTCAACAGGTATCTCCCCAAGCCTAAGAACAAGGACGGGCACTACCTCG
TAGACTCCAAGAAGTCTGCCGCGGACGCCGCGGTGGAGAAGGAGAAGAGG
GAGTTGGACGAGAAGGAGGCGGCGGTGGCCTTGGCGGGGGCGGACAGAGA
GGCG back to top
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