Homology
BLAST of mRNA_E_fasciculatus_S2_contig9809.17811.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB6_9PHAE)
HSP 1 Score: 476 bits (1224), Expect = 1.030e-153
Identity = 409/636 (64.31%), Postives = 432/636 (67.92%), Query Frame = 1
Query: 367 VGIVRDGGDIIRKDSGGCRXXXXXXXXXXXXESRDVAPGDAAEILGVAGRLVRTRGPWRCIFSKGRQPSSSVGEAGNNGTAATPAAAAAAVMQPSAPKPVGEVXXXXXXXXXXXXXXXAAGVMRRTERCESGGEGALLQAGERALSSVGGDGVRSNGG------GDD-------AATVGDDGRSGREAAEELSVVAAA--DGRAGFGGSGEGKDGSGGQEEAARPVREPRAEQGPVYLNTATMETAREPPAELVALADQAESAGEYLVFVPSHRFIAARAA--PVSALSLKGNVAAASASSHKCRNMDVDSNE----------------------AVRAATMSEAASAVGSAAERSAGPPRSPCSSAVNAG-------------NXXXXXXXXXXXXXXXXXXXXRGEQAQGTQQAPPLEASTTPSTVVKPVLGXXXXXXXXXXXXXXXXXX-TWDRLSSLPTIDLSQGVASAPLDVENAGDAGGNAAVEAVSATTVPVTWTCVACTLTNKARRTTCELCGTSRPKACHNKRPLSSTSLSADSGXXXXXXXHRRVGSVSKLRLRQPARSRSSVTPFTSRPGDGXXXXXXXXXXXXXXXXXXXXXXXXPHPPLSQSAATTPTNGFPAVRSQERSARP 2115
GIV GG+++R D+GGCR SR+ A GDAAEILGVAGRLVRTRGPWRCIFS+GRQPS+SVGE NNGTA AAAAA VM XXXXXXXXXXXXXAAGVMRRTE C+S AGERAL S GG GV NGG G+ AATVG DGRSG + +ELSVVAAA DGRAGFGGSGEG+D GGQEEAARPVREP A+QGPVYLNTATMET REPPAELVALADQAESAG+YLVFVPSHRF+AA A P A S NVAAA A SH NMDV+SN AV A MSEA SAVG+A ER P +A + XXXXXXXXXXX RGEQAQ TQQ PLEASTT STV K VLGXXXXXXXXXXXXXXXXXX TWDRLSSLPTIDLSQGVASAPLDVENAG GGN AV TV TWTCVACTLTNKARRTTCELCGTSRPKA + XXXXXXXHRRVGSVSKLRLRQPARS S+TPFTSRP GXXXXXXXXXXXXXXXXX P PPLSQ A TTP NGFP+VRSQERS+ P
Sbjct: 228 AGIVGGGGNVMRNDAGGCRSLVGRSSVVGGVASRNDAAGDAAEILGVAGRLVRTRGPWRCIFSQGRQPSASVGEVRNNGTAE--AAAAAGVMX------------XXXXXXXXXXXXXAAGVMRRTEGCKS--------AGERALRSAGGYGVERNGGCASNGVGESNGSGVGAAATVGGDGRSGSKTTQELSVVAAAAEDGRAGFGGSGEGRDRGGGQEEAARPVREPGADQGPVYLNTATMETVREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGAVPAPASSHNSNVAAAPAFSHCSSNMDVESNXXXXXXXXXXXXXXXXXXXXXXAAVTVARMSEATSAVGAAGER-----EQPAVTAASESCSPXXXXXXXXXXXXXXXXXXXXXXVGPNPRRNGRGEQAQDTQQGSPLEASTTLSTVAKAVLGXXXXXXXXXXXXXXXXXXXTWDRLSSLPTIDLSQGVASAPLDVENAGGTGGNKAV------TVATTWTCVACTLTNKARRTTCELCGTSRPKASQQRXXXXXXXXXXX--XXXXXXXHRRVGSVSKLRLRQPARS-PSITPFTSRPAGGXXXXXXXXXXXXXXXXXS------PQPPLSQPAGTTPINGFPSVRSQERSSPP 821
BLAST of mRNA_E_fasciculatus_S2_contig9809.17811.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ5_ECTSI)
HSP 1 Score: 219 bits (557), Expect = 4.420e-62
Identity = 183/285 (64.21%), Postives = 190/285 (66.67%), Query Frame = 1
Query: 1048 METAREPPAELVALADQAESAGEYLVFVPSHRFIAARAA--PVSALSLKGNVAAASASSHKCRNMDVD---------------------SNEAVRAATMSEAASAVGSAAER----------SAGPPRSPCSSAVNAGNXXXXXXXXXXXXXXXXXXXXRGEQAQGTQQAPPLEASTTPSTVVKPVLGXXXXXXXXXXXXXXXXXXTWDRLSSLPTIDLSQGVASAPLDVENAGDAGGNAAVEAVSATTVPVTWTCVACTLTNKARRTTCELCGTSRPKACHNKR 1803
METAREPPAELVALADQAESAG+YLVFVPSHRF+AA A P SA S NVAAA SH+ NMDVD SN AV A MSEAASAV +AAER S P XXXXXXXXXXXX RGEQAQ TQQ PLEASTTPSTV K VLGXXXXXXXXXXXXXXXX TWDRLSSLPTIDLSQGVASAP+DVEN G AGGN AV TV TWTCVACTLTNK+RRTTCE+CGTSRPKA R
Sbjct: 1 METAREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSRNSNVAAAPVFSHRSSNMDVDGNGSNPAAASALSHNSNMDTDSNAAVTVARMSEAASAVVAAAERVLQAVTAAGESCSPXXXXXXXXXXXXXXXXXXXXXXXXXGSNTRRNSRGEQAQDTQQGLPLEASTTPSTVAKAVLGXXXXXXXXXXXXXXXXG-TWDRLSSLPTIDLSQGVASAPVDVENGGGAGGNKAV------TVATTWTCVACTLTNKSRRTTCEVCGTSRPKASQQTR 278
BLAST of mRNA_E_fasciculatus_S2_contig9809.17811.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ4_ECTSI)
HSP 1 Score: 87.8 bits (216), Expect = 1.480e-17
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 2
Query: 407 IQAAVVALAAQTRPAVAVNPETSRLAMLLRFSVWRGGWSAPAGPGVASSRKDGSRRLRWERRVTTAP 607
+QAA LA + RP+VAV PET+R AMLLR S WRGGWS PAG G SSRKD SRRLRWER TAP
Sbjct: 1 MQAAAAPLAVEARPSVAVLPETTRQAMLLRSSAWRGGWSVPAGLGGVSSRKDDSRRLRWERCAATAP 67
BLAST of mRNA_E_fasciculatus_S2_contig9809.17811.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ3_ECTSI)
HSP 1 Score: 89.7 bits (221), Expect = 1.710e-16
Identity = 59/79 (74.68%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 4 REKDKERLANARTARAAGLVSGSTGSGGGPRQALRPAGIGGGAAATAAGDGSPAPETEKIVISKEMKDGFSALIASARS 240
REKDKER+ANA+TARA GLVSGS GSGGG RQALRPAG GG PE+EKIVISKEMKDGFSALIASARS
Sbjct: 136 REKDKERMANAKTARA-GLVSGSAGSGGGSRQALRPAGTGG---XXXXXXXXXXPESEKIVISKEMKDGFSALIASARS 210
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9809.17811.1 vs.
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90 )
Total hits: 4
0 1 Expect = 1.03e-153 / Id = 64.31 Expect = 4.42e-62 / Id = 64.21 Expect = 1.48e-17 / Id = 68.66 Expect = 1.71e-16 / Id = 74.68 Sequence RanBP2-type RanBP2-type Uncharacterized SAP
Match Name E-value Identity Description
RanBP2-type 1.030e-153 64.31 domain-containing protein n=1 Tax=Ectocarpus sp. C... [more] RanBP2-type 4.420e-62 64.21 domain-containing protein n=1 Tax=Ectocarpus silic... [more] Uncharacterized 1.480e-17 68.66 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more] SAP 1.710e-16 74.68 domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 2148 Hectar predicted targeting category other localisation Exons 4 Cds size 2148
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1696842624.4040468-CDS-E_fasciculatus_S2_contig9809:1358..1706 1696842624.4040468-CDS-E_fasciculatus_S2_contig9809:1358..1706 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9809 1359..1706 - 1696842624.4231756-CDS-E_fasciculatus_S2_contig9809:2449..3754 1696842624.4231756-CDS-E_fasciculatus_S2_contig9809:2449..3754 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9809 2450..3754 - 1696842624.437599-CDS-E_fasciculatus_S2_contig9809:4717..4972 1696842624.437599-CDS-E_fasciculatus_S2_contig9809:4717..4972 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9809 4718..4972 - 1696842624.4492705-CDS-E_fasciculatus_S2_contig9809:5269..5509 1696842624.4492705-CDS-E_fasciculatus_S2_contig9809:5269..5509 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig9809 5270..5509 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9809.17811.1
>prot_E_fasciculatus_S2_contig9809.17811.1 ID=prot_E_fasciculatus_S2_contig9809.17811.1|Name=mRNA_E_fasciculatus_S2_contig9809.17811.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=716bp
KREKDKERLANARTARAAGLVSGSTGSGGGPRQALRPAGIGGGAAATAAG back to top mRNA from alignment at E_fasciculatus_S2_contig9809:1359..5509-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9809.17811.1 ID=mRNA_E_fasciculatus_S2_contig9809.17811.1|Name=mRNA_E_fasciculatus_S2_contig9809.17811.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4151bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9809:1359..5509- (Ectocarpus fasciculatus EfasUO2)AAGCGAGAGAAGGACAAGGAGAGGCTAGCGAACGCCAGGACAGCAAGGGC
AGCAGGGCTAGTGTCAGGATCAACGGGGTCGGGGGGAGGGCCAAGGCAGG
CGTTGCGCCCGGCGGGGATAGGGGGGGGCGCCGCCGCCACCGCCGCTGGC
GACGGATCACCCGCACCTGAGACCGAGAAAATAGTTATCTCGAAGGAGAT
GAAGGACGGGTTCTCCGCCTTGATTGCAAGCGCCAGAAGT GTGAGCTGCC
CCCCACCTGTCGCAGATAGGATGGAGAGAACAGTTTTGAGCCACCTTTGG
CGGAGGGGGAAGGAACCATTGGTGATCGGTCATGTGGGGAAAGTGCTCCG
TCTTTTTCGACGACGGGCGCGTGGTCAATGGCCTAGGCGTGCGACACATG
AGAGTAGGCCCCCACCTGTCATCCTTGTGCTTGTGTTTGTTCTGCTGGTG
TTGGTGCAGCTGCTACGTACTCTTGTTTCGTGTTGTGTTAGCCGTCGAAT
GATGGCACTTCTTGCTGCTTCTGCTTTGTTTTTTCAGAAAGCAAAGAAGA
GACCGAGCGCTAGCACTTGCTCCGACGGCGGTGGTGGCGGCAGCAGCGAT
AACAAAAAGGCCCGCGTCTCCGAGGGTTCGGACTGCGGCGGCGGCGGTGG
CGGAAGCGACGGCGTCGGTATTGTCCGTGATGGCGGCGACATCATCAGAA
AAGATTCAGGCGGCTGTCGTAGCCTTAGCGGCTCAAACGCGGCCGGCGGT
GGCGGTGAATCCCGAGACGTCGCGCCTGGCGATGCTGCTGAG GTATGCTT
GCGCATGCATGGACTATCGTAATTTTGTTTTGTTCAGGCAATCCTAAGGT
CAAGCTCTCAAAGGCGATCCCAAGGTCTTTCATGTATCAGGCCAAGAGTC
AACTCAACTGAGACTGTGTTGTGGGGGTTAAATGTCGGACGTGTTTGCAG
AAGGTTCAAGGAGGTGGATGTCTGACGAGTGCACCCGGTAAAGAGTGAAA
CCCGCGTTCGGGGACGTTGTGGCGTGCAGCTGTAAAATTTTTGCTGAGTG
GTTTGGAAGCGTACTTGTTGTGCAATATGTGAACTGCTTGGCCGGGGGTG
CGTGATAGCGGTAAGGACTGCAGTACACCGCTTGGGCTAAACCGAACTGC
ACCGCTTGCATGGGTTCTGAGGACAAATTGTTCATGTGCGATGGATAGAG
ACACACTCATCCTTTTCCCCCACGATGTTTTCAACAAGACTTGTGCTCGA
CCCGGTGTTTTCCCAAGCCCACGTCCTCCTAAGGCATTGATCTGATTCAC
ATTGAATCAGTAGTGCGTGCTCTTCCATACGAGTGCCCTGCTGTAGCGTT
TTCGAAGTGCTTTCCCGTGTGGCGTGAGCCCTCGAAGCCTCCAAGTCGAG
ATACCTAACGCCTAGTGCGCACGAGAGACAGAAGTACACTTATTTTGCCA
TCCTGTGTCGCTGTTGCGCACTGTCTTCAAGTAAAAACCGCGTCCCCATC
CAAAACGATGCACCATTTGCAACTCATGCGGTTTTATGGCTCTGTTTCCC
CAAGGGCAACTTGTTTTTCCTGTTGTCGATACTTTCTCCACTGTGTAGTC
TACGCGCTCGCACGCGTAGTCCCGTGATCCTTGGGGGTACAGCGCGGCTC
CTTACTTCGCCTGTAAAGAACCAAAATGTTAAATATGTATGTTTAACACC
TTACCTGGTATATATTATGTTGCCATCACCATTTTCCATTCCCCGACGGC
GACAGATTCTCGGTGTGGCGGGGAGGCTGGTCCGCACCCGCGGGCCCTGG
CGTTGCATCTTCTCGAAAGGACGGCAGCCGTCGTCTTCGGTGGGAGAGGC
GGGTAACAACGGCACCGCCGCCACTCCCGCTGCCGCCGCCGCCGCCGTGA
TGCAACCGTCGGCTCCGAAACCGGTGGGAGAGGTGTGCAACAACGGCACC
GCTGCTGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGGCGTGATGCGAAG
GACGGAAAGGTGCGAGAGCGGGGGGGAGGGGGCGCTGCTGCAAGCGGGAG
AGCGAGCCTTGTCCTCTGTCGGCGGTGACGGCGTCAGGAGCAACGGCGGC
GGCGATGATGCCGCGACGGTCGGCGACGACGGTCGAAGCGGGCGCGAAGC
GGCAGAAGAGCTGTCAGTCGTAGCAGCAGCAGACGGACGCGCTGGTTTTG
GAGGGAGCGGCGAGGGTAAGGATGGAAGTGGAGGTCAAGAGGAAGCGGCA
CGTCCTGTCCGAGAACCGAGAGCAGAGCAAGGGCCGGTTTATCTCAACAC
CGCGACGATGGAGACGGCGCGGGAGCCGCCCGCGGAGCTGGTGGCTCTGG
CGGACCAAGCGGAAAGCGCCGGGGAGTACCTGGTGTTCGTCCCTTCCCAC
AGGTTCATAGCGGCACGCGCGGCACCGGTTTCCGCTTTGTCCCTCAAGGG
CAACGTGGCGGCGGCTTCCGCTTCCTCCCACAAATGCAGAAACATGGACG
TGGATAGCAACGAGGCGGTGAGGGCGGCGACGATGTCAGAGGCAGCCTCC
GCGGTAGGTTCCGCGGCCGAGCGATCAGCCGGTCCACCGCGCTCCCCCTG
CTCCTCGGCGGTGAACGCCGGCAACGGTAGCGGCGGTGCGCCAGCGACGG
CGGCGGCGGTGGGTTCCGACAGCAGTCGCAGCAGCCGAGGAGAGCAGGCG
CAGGGCACGCAGCAAGCGCCACCGCTTGAGGCGTCGACGACCCCGTCGAC
CGTCGTCAAGCCTGTGCTCGGTGGGTCTAGCACCAGCAGCAGCGGCCGCG
GCGGGGGCGGAGGCGGGGGAGGGGGCACGTGGGATCGACTGTCTTCCCTA
CCGACCATCGACTTGTCTCAGGGAGTGGCGTCGGCCCCCCTGGACGTTGA
GAACGCGGGGGACGCGGGAGGGAATGCGGCGGTGGAGGCGGTGTCGGCGA
CGACGGTGCCGGTGACGTGGACGTGCGTCGCGTGCACCCTGACGAACAAG
GCCCGCAGGACGACGTGCGAGTTGTGCGGAACCTCGAGGCCGAAGGCTTG
CCATAATAAG GTGAGGCGGGGAAGGGGTGTGGTTTGAGGTTTTGATTGCA
TCAAATATGTAGCAACTGTTGTGGAGACCGTGACCCAGCTGTGGTGATTG
GTCGGCTGGCTTGCTGGGGGTGCTGTAGTGTTCCATGATGAACTGCACGG
ACTCCCAAGTAAGGAGGAGGTTTGTCGGGTGTGCAAGCGGCGGATATGAA
AATCTCGAGAACTACAGAACAAGTATGACCAAGAGGGCTAGCCCTCCCGT
GTGATTCACTCGCGCGAGCGATGCGCTACGGGCAACGAGTGCCCGCTTGT
TTTTAACGGGTGGTTACCCCCCATCGCAATCAATTCACCGCAAAGAGAGG
GAAAATATCACGCCGCGAGGTCTACTGCTGTGTAATACGATTTTGAGCAT
TCTGCGTTGTCGGGCTAACCTTCCCTGGTTACCCCGTAACTCTGTGTTGT
GGTGTACGCCCCCCCCCGTTCTCGATTTGCCAAGATGTGTCCGATGCTGA
ATACGGGCAGCCGGTGCTGTTGTCGTCGACACGGCGCTAGTGTAGTGGGT
GCCTCTTTTCGGCCTCTACAGCAAACATGGACGTTTCGCACAGAATGCTT
TCCCCGCATAATTACGCAGCCGTCTGCGTTTGGCCGTGCCAGCCAGTCTG
ACTCCTCGCCAACATCCGTGCAACCAGTCGAACGTCGTCGTTGCGTTGTC
GTCATCATGCCCCTCCTTCGCTATCACGGTGTGTCTCCTTGCCCCAACAG
CAGAGGCCCCTGTCATCAACGTCGCTATCTGCAGACTCGGGCGGCGGCGA
CAGCGGCGGCGGTCACCGGCGCGTGGGAAGCGTGAGCAAGCTTAGGCTTC
GCCAACCGGCCAGGAGTCGTAGCAGCGTCACGCCCTTCACCTCTCGCCCA
GGCGACGGCGGCGGCGGCGGCGGCGGCGGTGCAACGGGAGCGGGGGTATC
AACAGGCGTGCCCGCCTCTTCTTCCTCGTCTCCACACCCGCCTCTATCAC
AGTCAGCGGCGACGACTCCGACCAACGGCTTCCCCGCGGTCCGGTCCCAG
GAACGTTCTGCCCGCCCGGGTGCTGCTGCTGCTGAGAAGGCACAGCAGTA
G back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9809:1359..5509-
>mRNA_E_fasciculatus_S2_contig9809.17811.1 ID=mRNA_E_fasciculatus_S2_contig9809.17811.1|Name=mRNA_E_fasciculatus_S2_contig9809.17811.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2148bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9809:1359..5509- (Ectocarpus fasciculatus EfasUO2) back to top