mRNA_E_fasciculatus_S2_contig9802.17808.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Isocitrate (lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLB9_ECTSI) HSP 1 Score: 257 bits (656), Expect = 2.520e-74 Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQFVRHGGGGXXXAHGRAHSVAVSPAVGASGIRAKL 421
DAAGMSK EMAAFN ELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQFVRHGGGGXXXAH A SVAVSPAVGASGIRAKL
Sbjct: 450 DAAGMSKQEMAAFNRELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQFVRHGGGGXXXAHSGARSVAVSPAVGASGIRAKL 589
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Isocitrate (lyase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK9_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.970e-41 Identity = 77/107 (71.96%), Postives = 101/107 (94.39%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQF 322
D+AGM++ +MA+FN +LG+LG+V+QFITLAGFH+DGLI +RL++EYG+HG+IKYV+LVQR ER EQVD+LTHQ+WSGA+LMD+QV +ATGG++STSAMGEGVTE+QF
Sbjct: 443 DSAGMTEAQMASFNRDLGQLGYVFQFITLAGFHADGLITARLSREYGQHGIIKYVDLVQRQERAEQVDLLTHQRWSGADLMDRQVRLATGGISSTSAMGEGVTEAQF 549
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Isocitrate (lyase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R325_THAOC) HSP 1 Score: 145 bits (367), Expect = 1.630e-36 Identity = 65/110 (59.09%), Postives = 92/110 (83.64%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQFVRH 331
DA+GMS ++A FN +LG+LG+VWQFITLAGFHS+GLI+++LA+ +G G++ YV +QR E+ ++V++L HQKWSGA L+D+ VN+A+GG +ST+AMG GVTESQF +H
Sbjct: 128 DASGMSDEQLAKFNDDLGKLGYVWQFITLAGFHSNGLIITKLARSFGDEGMLAYVRDIQRQEKVQEVELLKHQKWSGAELVDRMVNVASGGQSSTAAMGAGVTESQFGKH 237
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJF6_9STRA) HSP 1 Score: 141 bits (356), Expect = 4.370e-36 Identity = 63/107 (58.88%), Postives = 88/107 (82.24%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQF 322
DA+GM+ E+A FN +LGRLG+ WQFITLAGFHS+GL++++LA+ +G G++ YV+ +QR ER E+V++L HQ WSGA L+D+ V +A+GG +ST+AMG GVTESQF
Sbjct: 37 DASGMTDTELAHFNDDLGRLGYAWQFITLAGFHSNGLVITKLARSFGDQGMLAYVQNIQRKEREEEVELLKHQTWSGAELVDRMVTVASGGASSTAAMGAGVTESQF 143
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V6B5_9STRA) HSP 1 Score: 141 bits (356), Expect = 5.400e-36 Identity = 62/107 (57.94%), Postives = 90/107 (84.11%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQF 322
DA+GM+ ++++FN +LG+LG+VWQFITLAGFHS+G+I + LA+ YGK G++ YV +QR ER +V++LTHQ+WSGA L+D+ V++A+GG +ST+AMG+GVTE QF
Sbjct: 43 DASGMTDTQLSSFNDDLGKLGYVWQFITLAGFHSNGMITTELARSYGKEGILAYVRDIQRREREGKVELLTHQRWSGAELVDRMVSVASGGQSSTAAMGDGVTEKQF 149
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Isocitrate (lyase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRS4_9STRA) HSP 1 Score: 150 bits (379), Expect = 3.300e-35 Identity = 74/130 (56.92%), Postives = 96/130 (73.85%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQFVRHGGG--GXXXAHGRAHSVAVS 385
D AG+S EM FN L +GFVWQFITLAGFH++GL+ + A+EYGK GV+ YVE++QR ER ++VD+LTHQKWSGA L+DKQ+ TGG++STS+MG+GVTE+QF G G G G A + A+S
Sbjct: 476 DVAGLSPQEMEHFNSSLAAMGFVWQFITLAGFHANGLMTTMFAREYGKRGVVAYVEMIQRKEREQEVDMLTHQKWSGAALLDKQMQTVTGGMSSTSSMGKGVTEAQFGAKGPGAAGVSSGAGAARAGAIS 605
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Isocitrate (lyase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGI3_FISSO) HSP 1 Score: 149 bits (375), Expect = 9.220e-35 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQFVRH 331
DA+GMS E++ FN +LGRLG+VWQFITLAGFHS+GLI++ LA+ Y G+I Y EL+QR ER +Q+++L HQKWSGA L+D+QV +A+GG++ST+AMG GVTESQF H
Sbjct: 478 DASGMSDAEISRFNDDLGRLGYVWQFITLAGFHSNGLIITELARAYADRGMIAYCELIQRQERKKQIELLKHQKWSGAELIDQQVIVASGGVSSTAAMGSGVTESQFGTH 587
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Isocitrate (lyase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX52_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.060e-34 Identity = 66/110 (60.00%), Postives = 91/110 (82.73%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQFVRH 331
DA+GMS ++A FN LG+LG+ WQFITLAGFHS+GL+V++LA+E+G G++ YVE +QR ER +V++LTHQKWSGA L+D+ VN+A+GG +ST+AMG GVTE+QF +
Sbjct: 462 DASGMSDGQLATFNDALGKLGYTWQFITLAGFHSNGLVVTKLAREFGDRGMLAYVETIQRQERKHKVELLTHQKWSGAELVDRMVNVASGGTSSTAAMGSGVTEAQFANN 571
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Isocitrate (lyase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G518_PHATC) HSP 1 Score: 147 bits (370), Expect = 4.520e-34 Identity = 66/107 (61.68%), Postives = 92/107 (85.98%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQF 322
DA+GM+ ++A+FN +LGRLG+VWQFITLAGFH +GL++++LA+ YG G+I YVE +QR ER +V++LTHQKWSGA L+D+ VN+A+GG++ST+AMG GVTE+QF
Sbjct: 485 DASGMTDSQIASFNDDLGRLGYVWQFITLAGFHGNGLVMTKLARAYGDRGMIAYVEQIQRQERIHKVELLTHQKWSGAELVDQMVNVASGGVSSTAAMGAGVTEAQF 591
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Match: Isocitrate (lyase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMH1_THAPS) HSP 1 Score: 146 bits (368), Expect = 4.780e-34 Identity = 65/110 (59.09%), Postives = 90/110 (81.82%), Query Frame = 2
Query: 2 DAAGMSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYVELVQRPERNEQVDILTHQKWSGANLMDKQVNIATGGLASTSAMGEGVTESQFVRH 331
DA+GM+ E+A FN +LGRLG+ WQFITLAGFHS+GL+V++LA+ +G G++ YV +QR E+ E+V++L HQKWSGA L+D+ VN+A+GG +ST+AMG GVTE QF +H
Sbjct: 432 DASGMTDDELARFNDDLGRLGYTWQFITLAGFHSNGLVVTKLARSFGDEGMLAYVREIQRQEKEEEVELLKHQKWSGAELVDRMVNVASGGQSSTAAMGAGVTEDQFGKH 541 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9802.17808.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9802.17808.1 >prot_E_fasciculatus_S2_contig9802.17808.1 ID=prot_E_fasciculatus_S2_contig9802.17808.1|Name=mRNA_E_fasciculatus_S2_contig9802.17808.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp MSKHEMAAFNGELGRLGFVWQFITLAGFHSDGLIVSRLAKEYGKHGVIKYback to top mRNA from alignment at E_fasciculatus_S2_contig9802:1772..4798- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9802.17808.1 ID=mRNA_E_fasciculatus_S2_contig9802.17808.1|Name=mRNA_E_fasciculatus_S2_contig9802.17808.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3027bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9802:1772..4798- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9802:1772..4798- >mRNA_E_fasciculatus_S2_contig9802.17808.1 ID=mRNA_E_fasciculatus_S2_contig9802.17808.1|Name=mRNA_E_fasciculatus_S2_contig9802.17808.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9802:1772..4798- (Ectocarpus fasciculatus EfasUO2)back to top |