mRNA_E_fasciculatus_S2_contig9801.17807.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9801.17807.1
Unique NamemRNA_E_fasciculatus_S2_contig9801.17807.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9801.17807.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIZ7_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 2.680e-115
Identity = 194/367 (52.86%), Postives = 246/367 (67.03%), Query Frame = 1 
Query:  538 AGSGMESRFLRGKK----GDDTGATIPAVSDFKGDVLAWSFGDHEESIQSARCEFELKV-PNLGRTVPALIGLGLCSGSAETADGKQCLLHPVLTCVAGVGETFDPPLLLRFPVGDVDSMESGSERGSRDDAEVAYRAHLGHVFSAVKREDSDSEWVPINGEIVEIEGGV-FVLEVAVKHFCEFALKEMINVAAGCAEPVPLPKLRFKSRESHYHFVNLGTRNLVVHCWGAARREPFVNVAKAKFGIAPSGANAGGEIGRTLVDVPSTEVFTFSVPGISATGSAPQICLQLNGVKSLTVAWTTQQRREPSWWSSWWSGDVGHELVQVWGKISMQSKHVLVFGSELESASPVVANLVVEDCKSAGTSV 1620
            A +G E R+   K+       T + + ++ DFKGDV+AWSFG+  E ++S   EFEL+V P L +  PAL+GLGLCSGSAE  +G+Q LLH VLTC+   GE FDPPLLLRFPVGD DSMESGS  GS+DDAE AYRAHL   FSAVKR+D+ SEWVPI G+IV ++GG  F LEV + HFC+F L + I+V  G  E + LPK  F SR++HYHF NLGT+ LV H WGA R+E FVNV +A   +  +G + G E+ RTLVDVP +  +   VPG + +GS PQ+C +   ++  TVAWTTQ+R  PS      SG  GH+LVQVWG   M S HVLV G+    A+P +ANL V+D +  G  V
Sbjct:  203 ATTGGEPRYSEDKRLKIGTTHTSSQMSSLQDFKGDVVAWSFGNRAEVLRSPDSEFELEVQPGLNKNYPALVGLGLCSGSAEYVNGEQYLLHCVLTCLTRAGEKFDPPLLLRFPVGDEDSMESGSLDGSQDDAEEAYRAHLQSTFSAVKRDDASSEWVPIGGDIVRMKGGRDFFLEVKISHFCDFGLSQAIDVEVGYTELIELPKKMFSSRKTHYHFANLGTKPLVFHVWGAGRKEVFVNVVRANAAVDLAGGSVGAEMERTLVDVPGSGPYEVHVPGEAGSGSKPQVCRKFVDLEKPTVAWTTQERISPS------SGVEGHQLVQVWGSTPMLSGHVLVVGAMAPDATPAIANLRVDDGEDVGRLV 563
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BLAST of mRNA_E_fasciculatus_S2_contig9801.17807.1 vs.
Match: Putative (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD4_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 3.090e-101
Identity = 185/342 (54.09%), Postives = 229/342 (66.96%), Query Frame = 1 
Query:  610 VSDFKGDVLAWSFGDHEESIQSARCEFELKVPNLGRTVPALIGLGLCSGSAETADGKQCLLHPVLTCVAGVGETFDPPLLLRFPVGDVDSMESGSERGSRDDAEVAYRAHLGHVFSAVKREDSDSEWVPINGEIVEIEGGVFVLEVAVKHFCEFALKEMINVAAGCAEPVPLPKLRFKSRESHYHFVNLGTRNLVVHCWGAARREPFVNVAKAKFGIAPSGANAGGEIGRTLVDVPSTEVFTFSVPGISATGSAPQICLQLNGVKSLTVAWTTQQR-REPSWWSSWWSGDVGHELVQVWGKISMQSKHVLVFGSELESASPVVANLVVEDCKSAGTSVKAAV 1632
            +S F G V+AWSFG H   ++S   EFEL+VP LGR VPALIGL   S SAE  DG++CLLHPV+TC+A  GE FDPPL LRFPVGDV+SMESGS+ GS DDAEV YRA+L   FS + R+ + SEWVP++G I + + G+FVLEV V HFC+FALK+ I V +G  E V LP+L+ KSR SHYHFVNLGT NLVVHCWG  R+  F+   + K G   +G +A  E  RTLVD P T V+   VPG        + CL +NG +SLTVA+TTQ+  R  + + S       HELVQVWG   MQ KH ++FG   ESA  +V NL VED  + G  V++ V
Sbjct:  440 ISGFDGYVMAWSFGQHPAVLRSNGFEFELEVPRLGRNVPALIGLR--SSSAEVVDGEKCLLHPVVTCLARSGEVFDPPLCLRFPVGDVNSMESGSDCGS-DDAEVTYRAYLESTFSTLTRKHASSEWVPVDGTIEQTDEGIFVLEVQVSHFCDFALKQAIKVDSGGVELVKLPQLKHKSRRSHYHFVNLGTENLVVHCWGVTRKRGFLESFRLKLGFGLNGGDAEVEATRTLVDAPGTGVYKVDVPGGPVDDPRNEACLVVNGFESLTVAYTTQKTVRAGTLFGS------THELVQVWGTRHMQHKHAMIFGILPESA--LVPNLKVEDGVNVGELVRSKV 770
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9801.17807.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K655_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 2.210e-87
Identity = 164/345 (47.54%), Postives = 212/345 (61.45%), Query Frame = 1 
Query:  601 IPAVSDFKGDVLAWSFGDHEESIQSARCEFELKVPNLGRTVPALIGLGLCSGSAETADGKQCLLHPVLTCVAGVGETFDPPLLLRFPVGDVDSMESGSERGSRDDA-EVAYRAHLGHVFSAVKREDSDSEWVPINGEIVEIEGGVFVLEVAVKHFCEFALKEMINVAAGCAEPVPLPKLRFKSRESHYHFVNLGTRNLVVHCWGAARREPFVNVAKAKFGIAPSGANAGGEIGRTLVDVPSTEVFTFSVPGISATGSAPQICLQLNGVKSLTVAWTTQQRREPSWWSSWWSGDVGHELVQVWGKISMQSKHVLVFGSELESASPVVANLVVEDCKSAGTSVKAAV 1632
            + A+SDF+G+V+AWSFGD  + +++   +F+L+VP+LGR VP LIGL  CS SAE  DGKQCLLHPV+ C+A  GE+FDP L LR P+GD  SMESGS+  S D   +VAYRA+L   F+ V RED+ S WVPI+G I + EGGVFVLEVAV HFC+FAL + I+V  GC E VPLPKL+ K R SH+HFVN G  NLV HC GA  +  F +  K   G   + AN         V+ P+           S   +  ++C    G +S+TVAWT+Q  R P         +  H + QVWG   MQ KH +VFG      +  V+NL V+D +S G  VK+ V
Sbjct:   16 MAAISDFEGEVVAWSFGDSPDVLRNHDLDFDLEVPDLGRNVPTLIGL--CSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLRLPLGDEASMESGSDGASDDXXXDVAYRAYLASKFTVVTREDASSGWVPIDGTIQQAEGGVFVLEVAVPHFCDFALSQGISVPRGCMEIVPLPKLKGKPRRSHFHFVNQGEENLVAHCRGAVEKTGFWDFFKINLGAGATSAN---------VEDPA-----------STNPNKSEVCRVFLGTESVTVAWTSQ--RYPQ--------NARHRIPQVWGFSPMQHKHAMVFGPLSGIDTCQVSNLKVDDGESFGKLVKSKV 328
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9801.17807.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.680e-11552.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative3.090e-10154.09leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Uncharacterized2.210e-8747.54protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9801contigE_fasciculatus_S2_contig9801:2515..5032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score340.5
Seed ortholog evalue9.7e-91
Seed eggNOG ortholog2880.D8LHD4
Model size2315
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
Cds size1098
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9801.17807.1prot_E_fasciculatus_S2_contig9801.17807.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9801 3194..4402 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842623.9290833-UTR-E_fasciculatus_S2_contig9801:2514..28971696842623.9290833-UTR-E_fasciculatus_S2_contig9801:2514..2897Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9801 2515..2897 -
1696842623.9400897-UTR-E_fasciculatus_S2_contig9801:2908..31931696842623.9400897-UTR-E_fasciculatus_S2_contig9801:2908..3193Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9801 2909..3193 -
1696842623.9784667-UTR-E_fasciculatus_S2_contig9801:4402..48121696842623.9784667-UTR-E_fasciculatus_S2_contig9801:4402..4812Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9801 4403..4812 -
1696842623.9922478-UTR-E_fasciculatus_S2_contig9801:4893..50321696842623.9922478-UTR-E_fasciculatus_S2_contig9801:4893..5032Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9801 4894..5032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842623.9499588-CDS-E_fasciculatus_S2_contig9801:3193..42241696842623.9499588-CDS-E_fasciculatus_S2_contig9801:3193..4224Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9801 3194..4224 -
1696842623.9605632-CDS-E_fasciculatus_S2_contig9801:4335..44021696842623.9605632-CDS-E_fasciculatus_S2_contig9801:4335..4402Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9801 4336..4402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9801.17807.1

>prot_E_fasciculatus_S2_contig9801.17807.1 ID=prot_E_fasciculatus_S2_contig9801.17807.1|Name=mRNA_E_fasciculatus_S2_contig9801.17807.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=366bp
MESRFLRGKKGDDTGATIPAVSDFKGDVLAWSFGDHEESIQSARCEFELK
VPNLGRTVPALIGLGLCSGSAETADGKQCLLHPVLTCVAGVGETFDPPLL
LRFPVGDVDSMESGSERGSRDDAEVAYRAHLGHVFSAVKREDSDSEWVPI
NGEIVEIEGGVFVLEVAVKHFCEFALKEMINVAAGCAEPVPLPKLRFKSR
ESHYHFVNLGTRNLVVHCWGAARREPFVNVAKAKFGIAPSGANAGGEIGR
TLVDVPSTEVFTFSVPGISATGSAPQICLQLNGVKSLTVAWTTQQRREPS
WWSSWWSGDVGHELVQVWGKISMQSKHVLVFGSELESASPVVANLVVEDC
KSAGTSVKAAVAPKA*
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mRNA from alignment at E_fasciculatus_S2_contig9801:2515..5032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9801.17807.1 ID=mRNA_E_fasciculatus_S2_contig9801.17807.1|Name=mRNA_E_fasciculatus_S2_contig9801.17807.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2518bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9801:2515..5032- (Ectocarpus fasciculatus EfasUO2)
TTAATGAAGCGCTTTATATCTTGGTACCCACCTGCTACACGCGTGTCAGA
CTTCCAGACTGGGCTCAAGTAGTTACCTCGGCTCCTTCTAGACTGACGAA
AGCCGGATAGATGTCTACAGATGTAGCAAAGATCACACGGTTCCCAACTC
TGTTGAGTTGCTTACCCTCTCCCCCGTCGTCAGGTCTACGCTGAGCACGT
GGGCCTCCCATGGAGCGGAGATGAACGTTTTACCCATTACTCTTGAATCG
CACGGTGGTGTACACTTTTTTTGCGTGTTCCGCCTAGTCCCCGACAACTA
CAAGCAGCAGGGAAGGTGGGGTTCAGCGAGAGGAAAAGACAATTGTGTTT
TCACTGGTGCTGAGATCGTGGACAGGGCCTTTTTCGGCTCCCCCGAGATT
GCTTTGGGATCCTTGTTTTGTACCTCGTTGATATCCAACAGAGGCCATCA
GACAGAGAACACTGAAACGGCTTAGGCAAGTACCCCTGGGCCGATCCCGC
TTGCACGTTCTCCTGGGGCAATTCGCACACTTTTAAGAGGGAGTGACCGG
GATGGTCTTAAGAAGATCGTGCCGAGATTTCTCCTTACACAACGTCCTTC
CTCTACCGATTACCGCAAGCAGGCAGTGGGATGGAATCCCGCTTCCTCCG
TGGCAAGAAGGGAGATGACACCGGCGCCACGATTCCAGCCGTATCAGGTA
CGTCGTTGTGGCCTGCCCGAAGGACACCATCGTCCAGTGCACTGCAGAGA
GGTTGAGAGGCAACTCACCCTGTGCCGACCTTTCATTTTGTCGCCGCCCG
ACTCGCAGATTTCAAGGGGGACGTGTTAGCTTGGTCTTTCGGAGATCACG
AGGAGAGTATCCAAAGCGCTAGGTGTGAGTTTGAGCTCAAGGTGCCCAAC
CTGGGGAGAACTGTTCCTGCCCTGATCGGCCTCGGCCTGTGCTCGGGCTC
AGCCGAAACAGCGGACGGAAAGCAGTGCCTGCTACATCCCGTACTGACAT
GCGTCGCCGGTGTTGGAGAGACATTCGACCCCCCGCTCCTCCTGCGGTTT
CCCGTCGGAGACGTGGACTCAATGGAATCGGGCTCCGAGCGCGGCAGCCG
TGATGACGCTGAGGTGGCGTACCGCGCCCACCTTGGGCACGTATTTTCGG
CTGTCAAACGAGAGGACTCTGATTCAGAGTGGGTCCCGATTAATGGGGAA
ATCGTCGAAATCGAGGGGGGTGTTTTCGTTTTGGAGGTGGCTGTTAAGCA
CTTTTGCGAATTTGCGCTCAAGGAAATGATCAACGTGGCAGCCGGTTGTG
CGGAACCAGTCCCTTTGCCAAAGCTCAGGTTCAAGAGCAGAGAGTCGCAC
TACCACTTCGTCAATCTTGGCACGCGGAACCTCGTGGTCCACTGTTGGGG
TGCTGCACGGAGGGAGCCTTTCGTAAACGTTGCAAAGGCGAAGTTTGGAA
TTGCCCCAAGCGGGGCAAACGCCGGGGGAGAGATAGGACGAACGCTCGTA
GACGTGCCCAGCACTGAGGTTTTCACGTTCAGCGTGCCTGGTATATCCGC
CACCGGAAGCGCCCCTCAAATATGCTTGCAGCTGAACGGCGTGAAGTCGC
TGACGGTAGCATGGACGACTCAGCAACGACGAGAACCGTCGTGGTGGTCG
TCCTGGTGGTCGGGTGACGTCGGCCACGAGCTAGTCCAGGTCTGGGGCAA
AATTTCCATGCAAAGTAAGCACGTCTTGGTGTTTGGATCCGAGCTGGAGA
GCGCGAGTCCTGTTGTGGCAAATCTGGTCGTGGAAGACTGCAAAAGTGCA
GGTACAAGTGTCAAGGCGGCGGTGGCACCGAAAGCGTAGAGGTCGGCTGA
CATCCCTTACAGGAGATGGTAAGCGGCTTGTTTATTTCCTCTGGATGCAT
GCGTGCTTTATCGGTTGGTAGAAGCTTGTTTCGCACCCCTTTGGAGGTGT
TGATCGATCTCGGACAGCCTAGGAAGAAAAAGACTCGTTGGTTGGGAAGT
AAGTGTACTTTGCGTCGGGCTGACTGAGTGTTGTTTGCGGGAAGATCTAA
GTCGTCAGGGTTCGCAATTTTCTTCGGGGGATCGGTGCTGCGAGAAATTC
GAGGTCAAAGCCGGCGCTTGCGCCAAAACTGCGCCGAAAATTACTGGGCG
GGTTGTCGCCGATATGGTTTGAAGCTGCACCAAATGAATATCTTGCAGCC
AGCCACCAACTCTACAAGGGGGGCCGTGCTTCTGGGTAAGATTGACAGTA
CGCCGCTTAAGTAGCAGAAAACCGGTAGCTTCGGAATTGGTACTGGCGTT
CCACGGTATTCTATGCGGTGGCGGTAGGTTGATTTTCCAGCTGCGATAGC
TGTGATTTCTCTTGCCTGAAATGCGAAGCGGAATATCCTCTCCTTGTTCC
TTCTTCTGTGGAACTTCATGAATAATCGCATGGATCCCGAAACCAATCCT
GTACACAGTATCGTGGGAAACTCCGCGAACCTTTCCCACGGAATGATTCT
CATGTGCACCCCCTCCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9801:2515..5032-

>mRNA_E_fasciculatus_S2_contig9801.17807.1 ID=mRNA_E_fasciculatus_S2_contig9801.17807.1|Name=mRNA_E_fasciculatus_S2_contig9801.17807.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1098bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9801:2515..5032- (Ectocarpus fasciculatus EfasUO2)
ATGGAATCCCGCTTCCTCCGTGGCAAGAAGGGAGATGACACCGGCGCCAC
GATTCCAGCCGTATCAGATTTCAAGGGGGACGTGTTAGCTTGGTCTTTCG
GAGATCACGAGGAGAGTATCCAAAGCGCTAGGTGTGAGTTTGAGCTCAAG
GTGCCCAACCTGGGGAGAACTGTTCCTGCCCTGATCGGCCTCGGCCTGTG
CTCGGGCTCAGCCGAAACAGCGGACGGAAAGCAGTGCCTGCTACATCCCG
TACTGACATGCGTCGCCGGTGTTGGAGAGACATTCGACCCCCCGCTCCTC
CTGCGGTTTCCCGTCGGAGACGTGGACTCAATGGAATCGGGCTCCGAGCG
CGGCAGCCGTGATGACGCTGAGGTGGCGTACCGCGCCCACCTTGGGCACG
TATTTTCGGCTGTCAAACGAGAGGACTCTGATTCAGAGTGGGTCCCGATT
AATGGGGAAATCGTCGAAATCGAGGGGGGTGTTTTCGTTTTGGAGGTGGC
TGTTAAGCACTTTTGCGAATTTGCGCTCAAGGAAATGATCAACGTGGCAG
CCGGTTGTGCGGAACCAGTCCCTTTGCCAAAGCTCAGGTTCAAGAGCAGA
GAGTCGCACTACCACTTCGTCAATCTTGGCACGCGGAACCTCGTGGTCCA
CTGTTGGGGTGCTGCACGGAGGGAGCCTTTCGTAAACGTTGCAAAGGCGA
AGTTTGGAATTGCCCCAAGCGGGGCAAACGCCGGGGGAGAGATAGGACGA
ACGCTCGTAGACGTGCCCAGCACTGAGGTTTTCACGTTCAGCGTGCCTGG
TATATCCGCCACCGGAAGCGCCCCTCAAATATGCTTGCAGCTGAACGGCG
TGAAGTCGCTGACGGTAGCATGGACGACTCAGCAACGACGAGAACCGTCG
TGGTGGTCGTCCTGGTGGTCGGGTGACGTCGGCCACGAGCTAGTCCAGGT
CTGGGGCAAAATTTCCATGCAAAGTAAGCACGTCTTGGTGTTTGGATCCG
AGCTGGAGAGCGCGAGTCCTGTTGTGGCAAATCTGGTCGTGGAAGACTGC
AAAAGTGCAGGTACAAGTGTCAAGGCGGCGGTGGCACCGAAAGCGTAG
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