mRNA_E_fasciculatus_S2_contig98.17802.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig98.17802.1
Unique NamemRNA_E_fasciculatus_S2_contig98.17802.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig98.17802.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ25_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.470e-85
Identity = 141/149 (94.63%), Postives = 143/149 (95.97%), Query Frame = 1 
Query:    1 MSDTDDDFDMPDSTLFNRPGSKGKDKASSATQNKKKSTPSFMSGLDALVAESTLNAERSEKISEIMNLGEDILEKDLLKTEQQKARTDATEAKDKADHKAIMEDTSIRIPGVIQVFRQPEEQGPPDLGFEPPQSAGELSVLAEAVKLAG 447
            MSDTDDDFDMPDSTLF+RPGSKGKDKASS TQNKKKSTPSFMSGLDALVAESTLNAERSEKISEIMNL EDILEKDLLKTEQQKARTDA EAKDKADHKAIMEDTSIRIPGVI+VFRQPEEQGPPDL FEPPQ  GELSVLAEAVKLAG
Sbjct:    1 MSDTDDDFDMPDSTLFSRPGSKGKDKASS-TQNKKKSTPSFMSGLDALVAESTLNAERSEKISEIMNLAEDILEKDLLKTEQQKARTDAAEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPEGELSVLAEAVKLAG 148
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BLAST of mRNA_E_fasciculatus_S2_contig98.17802.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V2_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 2.150e-82
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 1 
Query:    1 MSDTDDDFDMPDSTLFNRPGSKGKDKASSATQNKKKSTPSFMSGLDALVAESTLNAERSEKISEIMNLGEDILEKDLLKTEQQKARTDATEAKDKADHKAIMEDTSIRIPGVIQVFRQPEEQGPPDLGFEPPQSAGELSVLAEAVKLA 444
            MSDTDDDFDMPDSTLF+RPGSK KDKAS+A QNKKKSTPSFMSGLDALVAESTLNAERSEKISEIMNLGEDILEKDLLKTEQQKARTDA EAKDKADHKAIMEDTSIRIPGVI+VFRQPEEQGPPDL FEPPQ AGELSVLAEAVKLA
Sbjct:    1 MSDTDDDFDMPDSTLFSRPGSKDKDKASAA-QNKKKSTPSFMSGLDALVAESTLNAERSEKISEIMNLGEDILEKDLLKTEQQKARTDAFEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLA 147
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig98.17802.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.470e-8594.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.150e-8294.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig98contigE_fasciculatus_S2_contig98:19457..22894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004650.1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842623.18068-CDS-E_fasciculatus_S2_contig98:19456..194941696842623.18068-CDS-E_fasciculatus_S2_contig98:19456..19494Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 19457..19494 +
1696842623.1903086-CDS-E_fasciculatus_S2_contig98:20388..205091696842623.1903086-CDS-E_fasciculatus_S2_contig98:20388..20509Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 20389..20509 +
1696842623.1989014-CDS-E_fasciculatus_S2_contig98:21304..214031696842623.1989014-CDS-E_fasciculatus_S2_contig98:21304..21403Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 21305..21403 +
1696842623.207798-CDS-E_fasciculatus_S2_contig98:22508..226101696842623.207798-CDS-E_fasciculatus_S2_contig98:22508..22610Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 22509..22610 +
1696842623.223198-CDS-E_fasciculatus_S2_contig98:22801..228941696842623.223198-CDS-E_fasciculatus_S2_contig98:22801..22894Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 22802..22894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig98.17802.1prot_E_fasciculatus_S2_contig98.17802.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig98 19457..22894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig98.17802.1

>prot_E_fasciculatus_S2_contig98.17802.1 ID=prot_E_fasciculatus_S2_contig98.17802.1|Name=mRNA_E_fasciculatus_S2_contig98.17802.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=151bp
MSDTDDDFDMPDSTLFNRPGSKGKDKASSATQNKKKSTPSFMSGLDALVA
ESTLNAERSEKISEIMNLGEDILEKDLLKTEQQKARTDATEAKDKADHKA
IMEDTSIRIPGVIQVFRQPEEQGPPDLGFEPPQSAGELSVLAEAVKLAGR
*
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mRNA from alignment at E_fasciculatus_S2_contig98:19457..22894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig98.17802.1 ID=mRNA_E_fasciculatus_S2_contig98.17802.1|Name=mRNA_E_fasciculatus_S2_contig98.17802.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig98:19457..22894+ (Ectocarpus fasciculatus EfasUO2)
ATGTCAGACACCGACGATGACTTCGATATGCCGGACAGGTGAGCGGCGAA
GTGGTCTACTGGCCTCCGACTGCTGGATGTAGCAATGCACCCCCCGAAAG
AGCCATCCCGAGTTTGAATTTCAAACATGTCAGCACACTGATTCTGGTAT
GTTTGCACGTTGATATTGATTGCCCTTGCCGAACGCTTGCAAGGTTGGGC
CTGGCTGCCTGGGTCAAGCCTGGGGTGGTAGTATAGGACCGATTAAGATG
AACATTTAGTTGGTGTCGCCCCTCCCCCCTCCCCCTCCTTCCTGCTTGGC
TTCGAAAACTGCACAACCCACTTGCTGAAGTCTACAAGTACAGCAGTCTG
GTAGTCTGGTATGCAAAGATGACGGCTCTTCTCTCGTTTGAAAGCCTCAA
AATCTAGTGTACCGCGATATCTCACTCACTCCCATGCGCCAGCAGTTGCA
TCGCACATTGAGAGGGAGAAATTCGGGAAAGTGAGGGAGATGTACATAGA
TGTGAATTGATTCGCTACGTGGCTGGCTGTTCACTACTGTTGAACCAAAA
GAGACTGATATCTCTGATTTGTTTACGCCGCACACACCAGATAGACTATA
ATTCGAAACAAGTACAGCAGAACAGCATCACTTCACCCTTACCCCCATGA
ATGAAAACACACAGAGACACATGCACGCATCGAATGCCTTGTGCAGCATA
CGCTTGCCCCAAGACCGCATTGGCCACTGCAAACGAGGGCCTGAGTTCGT
GCGCCGAAGGCCATGTGGACGTTCCCACGTCACCCTGCGCTCGGGGTTCC
CCTTACATGGAAGGCGGTGTCGTATATACCTCGATCGAAGGTGTTTGCGT
CCCCCCCCCGTGCCCCCCTTAAGTAAAACACGTTACGGCGTATATCTACG
TCTGTTTTTACCCCCCGAAACCGCACGTTTAGCACGCTGTTCAACCGGCC
TGGCAGCAAAGGCAAGGACAAGGCTTCTTCTGCGACGCAGAACAAGAAGA
AATCGACACCTTCGTTCATGAGCGGCTTGGACGCGCTCGTCGCTGAGTCG
ACGGTAAGTTTCTCGACCCTCGACTCTTGACTCTTGACACCCTTCACTAT
TTATTGTGCCGTCGATTTTCGACCTTCTGTCAGACCTCGTGCCCCCAGGT
TCCATCCGCAGTAGTACTTGATTGGTCCTTGTTCCTACGATTGCCTTCGA
GTTCGACATGTGTTCTTCCATCGCCCATCTCGAAAATTCGAGAGATTCCT
GCCCTCTTGAAATTCCACGTCTCCCTCTCTACAACTCAAGTGGATTCGGT
TATGTGTGGCCACTGCAGACGGTAGAACTGGACCAAGTGGCCATGGGCAC
CAACTTCCCGGAGATTACCTAAGCTACGGTCCACTCGTTATCGTCTGGGG
AAACATTTTTTATTGCATTCTCCGTTTCTGTGTAGGCCGAGACGTGTTTG
CCCTGTTTTTAAGGCCTTTCTAGGACGAGTTTTGGCCCAAGCTACATGCC
CGCAAAACCAGCGAAGTATGCTGGGCACTAATTGGCACTACTACTCAATC
TTTGGTTGGTACCTTGTCCTCATAAGCTATCTTCTATCTTCAAAAATGAA
CCGTGGTGTGTACAAGGACGAAGTAGGTTGAGGTAGACCATCAAATGATA
CAAATGAAACCGCATGGGAGATGAAACAATCTTACCACATTAGAGATGAA
GATGTTACTTGCTGTAGGAGGTGTGTGACACCAAGCACATTGTGGTTCGG
TACACCGATGCTTTTGACCTACCACTTCTCTTACAAAGTGCGGTTCATTG
GCGCTTGCGCCATGAACCTTTTGGTTGATTCATTTCTCGACATCGCAGCT
CAACGCCGAGAGGTCGGAGAAGATAAGCGAGATCATGAACCTTGGTGAAG
ATATTCTCGAAAAGGACTTGCTGAAGACGGAGCAGCAGAAAGCAAGGGTG
AGGTGGTTGGTATCCAATGTAGGAGTCCTTACATTGTTGTTGAAATACCT
TTTAGGGGCCTTAATGATAGAGAGGTAGGGACGGGATTCGGGGAAGATTT
GCGTGGCTCCGGTGACGCTGCTGCTTCTCTGAGTGTATATATTGCTGTGT
AGAAATATACCCAAGGGTGTGAGGGATTCGCTGGATGGAAGCGTAGACGT
GCAAAAGTATTACTAGAAGTAACGTCTGCCTGCCATATCGCGTGGTCTCT
CCTTGCTCCGCATCCTTTGTTTGTTGCGCCTGTACCGCTGTCGGGGAACT
AAATAGCTGCTGTGCGTCGTACAGTAGGGGTGGTGGCGTGGTGATGCCCC
CCCCTCTTTGGTGCTCGGCTGTAGATCGATCGTTGTGTATACGCGGCTGG
TTGTCGCTTTCGGACTGGAACCTGCGCCTCACAGAACGCAGCAGCCGCTT
GAAACGCCCGAACGCACCCAAGAATTATGAGGGCCACCCCCCCCTCGTTG
ATCTCATGTAGATATATATGGCTTGGAACACGTTGCCTTGCGGCGCCTGG
TGGCACAGCACGACACAGCAGTCACGCGTGCACACCATAACGGACAACCA
ATACACTTGCTCTATATAGGCTCGCAGCAGTAGTGTCCCCCCCGTGACGT
GACACAAGGGCGAATGCCAGGGCTAAGGGCACGAAAGAGGTGACGAAAAA
TGACACCCTAAATGCGATTCATACAGAACACCTCCTGCTTAGGCCGTTCA
CAAACTAACAGCATTTCGATCGGTCTGTTTCCCAGTGGGAAGCAGCATTC
AATGCCCCTTGGTGCATCGTGCATACCTTTCCGGTGATGATGCCTTCTTT
TTTTCTTTTCTGGTCTTTTTTCTTTTCTCGTCCCTTTATCCTGTTCGGCA
CCCCTTCAGCCACTCTGGTGGAAGGGGTCACAATCAATGATAGCTCCCTG
AGCCCCTCCACGCTCATCCTCCTCAGATGACCGCCTCCATGTGCATCCGG
AGGGGGAGGGTTCAGCGGTCCTCTCAGGCCATTCTCACCAATGTTTCTTT
TTGCGTTGTCTCATGTTTCTCTACCACTCATGCACTGCTATCCTGTGAAC
AGACGGATGCAACCGAGGCGAAGGATAAGGCGGACCACAAGGCCATCATG
GAGGACACGTCCATCAGAATCCCGGGGGTCATCCAAGTTTTCCGCCAGCC
CGAGGTGTGTCAAGGCTGGCGACTCGGGGGGAACTTTCGTGCGGGACGTG
AACGATACCTGCTTGCCCCTACGCATGCACTGTGCCGGAGCCAACGCCAT
GTCACGTCGGTGATCCCCTAGAAGCTTTGCTTTGTTTTGCTTCACTTTGC
TTCACTTTACCTTCGCTTTGCTTGGCTTTCGCTTTGCTGGGTCAGGAACA
AGGGCCGCCAGATCTGGGGTTCGAGCCTCCCCAGTCTGCCGGAGAGCTGT
CGGTTCTGGCAGAGGCCGTAAAACTCGCAGGTAGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig98:19457..22894+

>mRNA_E_fasciculatus_S2_contig98.17802.1 ID=mRNA_E_fasciculatus_S2_contig98.17802.1|Name=mRNA_E_fasciculatus_S2_contig98.17802.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=453bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig98:19457..22894+ (Ectocarpus fasciculatus EfasUO2)
ATGTCAGACACCGACGATGACTTCGATATGCCGGACAGCACGCTGTTCAA
CCGGCCTGGCAGCAAAGGCAAGGACAAGGCTTCTTCTGCGACGCAGAACA
AGAAGAAATCGACACCTTCGTTCATGAGCGGCTTGGACGCGCTCGTCGCT
GAGTCGACGCTCAACGCCGAGAGGTCGGAGAAGATAAGCGAGATCATGAA
CCTTGGTGAAGATATTCTCGAAAAGGACTTGCTGAAGACGGAGCAGCAGA
AAGCAAGGACGGATGCAACCGAGGCGAAGGATAAGGCGGACCACAAGGCC
ATCATGGAGGACACGTCCATCAGAATCCCGGGGGTCATCCAAGTTTTCCG
CCAGCCCGAGGAACAAGGGCCGCCAGATCTGGGGTTCGAGCCTCCCCAGT
CTGCCGGAGAGCTGTCGGTTCTGGCAGAGGCCGTAAAACTCGCAGGTAGG
TAG
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