mRNA_E_fasciculatus_S2_contig98.17799.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig98.17799.1
Unique NamemRNA_E_fasciculatus_S2_contig98.17799.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig98.17799.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ28_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.870e-25
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:  120 MGDFKDQMAKKLQAAARGYIQRKTGMGGKTAGKKHKAGXXXXXXXXXXXXXKSEDMNAMIIQAAFRKYKEYKKKN 344
            MGDFKDQMA K+QAAARGYIQRKTGMGGKTAGKKHKAGXXXXXXXXXXXXXKSEDMNAMIIQAAF+KYKEY+KK+
Sbjct:    1 MGDFKDQMAAKVQAAARGYIQRKTGMGGKTAGKKHKAGXXXXXXXXXXXXXKSEDMNAMIIQAAFKKYKEYQKKH 75
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig98.17799.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.870e-2593.33protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig98contigE_fasciculatus_S2_contig98:80..3813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1430
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionIQ motif protein
Ec32 orthologEc-07_004620.1
Cds size228
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig98.17799.1prot_E_fasciculatus_S2_contig98.17799.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig98 786..2730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842622.8693628-UTR-E_fasciculatus_S2_contig98:79..1641696842622.8693628-UTR-E_fasciculatus_S2_contig98:79..164Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig98 80..164 +
1696842622.881336-UTR-E_fasciculatus_S2_contig98:751..7851696842622.881336-UTR-E_fasciculatus_S2_contig98:751..785Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig98 752..785 +
1696842622.9302552-UTR-E_fasciculatus_S2_contig98:2730..38131696842622.9302552-UTR-E_fasciculatus_S2_contig98:2730..3813Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig98 2731..3813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842622.8943832-CDS-E_fasciculatus_S2_contig98:785..8531696842622.8943832-CDS-E_fasciculatus_S2_contig98:785..853Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 786..853 +
1696842622.9030788-CDS-E_fasciculatus_S2_contig98:1807..19461696842622.9030788-CDS-E_fasciculatus_S2_contig98:1807..1946Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 1808..1946 +
1696842622.9117901-CDS-E_fasciculatus_S2_contig98:2709..27301696842622.9117901-CDS-E_fasciculatus_S2_contig98:2709..2730Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig98 2710..2730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig98.17799.1

>prot_E_fasciculatus_S2_contig98.17799.1 ID=prot_E_fasciculatus_S2_contig98.17799.1|Name=mRNA_E_fasciculatus_S2_contig98.17799.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=76bp
MGDFKDQMAKKLQAAARGYIQRKTGMGGKTAGKKHKAGKGGKAGKGGKKA
KKSEDMNAMIIQAAFRKYKEYKKKN*
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mRNA from alignment at E_fasciculatus_S2_contig98:80..3813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig98.17799.1 ID=mRNA_E_fasciculatus_S2_contig98.17799.1|Name=mRNA_E_fasciculatus_S2_contig98.17799.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3734bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig98:80..3813+ (Ectocarpus fasciculatus EfasUO2)
AACTTCCCTCTTCCTTCCCCGCCACTCCCTACCCGTGTCGGCTGCGTTAC
ACGCCCCTTTCGACCCACGCTCCCTATACACGAAGGTGAGAAGGTGGACA
GAGTTAGGTACTGGTCAGGAATTAGCGAAGGAAATCGAGAAGAGAGGGGG
AAACCGCGCTCGCTCTATGCATATAACCGCGGTTGAGCTTCCGATCCGCC
TCCGCCGCTCTGCGATGTCATGTACGCGGTATTCCCAAGCCGTGTTGGGT
CCGAGGAGGGGTATCGCGTATCCTGTACCTCATTCCGTGGAGGCAGATGT
TGTTGGCGCACACACACGCGATATCTTGTAGCCGCGCTGCTTCCCCGCCC
ACGACAGCTGAGCGGCGAAGATTATTGTTTTGTGGCAATCTCGATCTTGA
CAACCGCAGGACGAACCGCTCCCACGCCAAACAACCGACACTGCGCTTAT
TGAGGATTGATTCCTGGGCTGTGTTATACGCCCGCGACCAGCCCTGTACC
AGAGACGAGAACGGCATGGGTGGGCTACTGCTGTATTGGTGTATTTCGGT
GTCACCTATCTATCTGCTCTCTGCTGCCCGCTCTCTTGATTGACTCTCTT
CGCTCGGACCCTCCGGAGTTGTTCCGCACCATAGAAATAACACGAAGTGC
CATGTCACCATGTTGCTCGCAGGTCTGCGTACCCACCCCGCCGTTCCATA
CCAACCATGGGTGACTTCAAGGATCAGATGGCGAAGAAGTTGCAGGCGGC
AGCTCGGGGGTACATCCAGCGCAAGTAAGGCGTCACTGAATGGCGGCAGG
GTGCGATTTTTTTTTTTGGTTGGTGTATGTGTGGCCGTGGTTTTTTTTTT
TTCTGTGGGCGCTCGCGCTGGCTCCCTCAACCTGTTCCGCTCAGGCCCCT
TCCTACCTCCTAGCTACGGCAGTGGCGTACTGGTGGTCGCCTTATCTTGT
TCTGAACGAAGGTACTCGGTGCCTTGGAAGCATTCCTGTAATTTCGCGCT
TTGTGGAACGCGCTACAAGAGTAAGAGTTCTAACACGACGCTACAAACAC
CTGCACGGGGGGAGAATCCTTGTTGAGGACTTGCCAGCCACAATTTTTTT
TATTCCTGGTTGGTGTGTCGGTCAGGATTGCGTTGTTTGTTTTGGTTTCG
ACTCTCAACAACTTGTATGTGTAGTACAACTGCAGGTTTCGTGTGTGGGT
ATACGTGGGCTTCAAGGGAGTGAAAGGAAAGTTTGAAGTACACGCGATCG
CCCCCTGTTTGGTATGGGAGTGTGGTTCGGAAAAGACAATAGTCCCCTTT
TTTCCGTCGTCTTTTGAAGCTCCTCGGCGCTCCCCGTCGAACATTTGTTC
GGCGCAACAAAAAGCACGAACATGAACTTACACGTGTGGTTGATCGGACA
GCCCCCGGTCGCTCGCAATTTTAGTCTGCTCCTTACCGCGGGACCTTGGC
TGGCGCATGCGACAGGGACGTACAAGTTGGTTGTGACAGTCCACCGAGTC
TTACCTGCCTAGTCCTGTATCTAGCTTCTTTTTTTTTCGCTCGTTCCTCT
ATAACAAGCAAAACATCTTATTTTCTGTGAAGTCCTCCTGACAACAGGAC
GTCTGTATTCTAGCCCCCTGTCTGCTGCCCGAGGATTGAGCACACCAAGT
TCACGGGGTCCTCGCAGAGTGGACGCCTTGTTTTCTGATCCGCCACGTCT
TGTCTTTGGCTTTGTCTTGCTGTCGCAGGACTGGGATGGGCGGTAAGACG
GCGGGCAAGAAGCACAAGGCCGGGAAGGGCGGCAAGGCTGGAAAGGGTGG
CAAGAAGGCCAAGAAGAGCGAGGACATGAACGCCATGATCATCCAGGCGG
CCTTCAGGAAGTACAAGGTACGGGCAAGCTGTAACGAGCCACGGAGCGTC
CACCACCCTGTCGGATGTCGTTTCCAGGAGGTTCTGTTGTGACGGCTGTG
TGGTGGGAGTACTGGTGTCGTTGGCCGCAAGCTTGTGGTCAGTGCTCTCG
GGCGTGTTCTTAGTCCTGAAATCCAGGCAGGGAGAAATGAAGTGCCCTGT
TTCCTTTTCCATGTCGGTGTAGTGTAACCATACTGTGCACGACGGGACAC
TTTCAGACACGAAGTACGGGACGTTTCAACGCGCTTCAGCGCCGGTTGTG
AGAAGATGGGACCCTCCGGTAGTAACGTCGTGATTGCTTTCGTTAGGTGC
GTTGAAGGGAATCGTGAGAGCAGGCAGTGGTCGTCGTCAACACGCACGCT
CTAAAGCCTGGGAAGTATGCGTTTTAGAATGACCGTGGATAGCAGCTTCC
AGGTTGTTTTCTCAGCCTATTCAGTCTGTTTATCAGCTGCTATTTCCGAT
CTACCCCCGATTTCGATGGACACGGAAGATCTGATGGCAGTGGCACATGA
ACCGGCAGAAGGCAGGACGCGCGGAGCCGGCGTGTGCAAAGACCTGTTGA
TCATGACATCAGAGTGTTAATTTGCCATTCTGCCTTGGTTACTACATGAT
ATTGTTAAAAATTTGTTCAAGAAATACTTGTTTTGAGACCTCTATATGTA
GAAACCCTGTTGGCCAACGACTTTCTTGATTCACCCTTGCTTTTGCCGTG
ACATGCTACACCGCCATGCTTCCAAAACAGGAGTACAAGAAGAAGAACTG
ATGCCTGACGTGACTGGCCGTCACCCACGAGACACGGACATATTGCACGC
TCGTCGAGAGGAGGGGAGGAGAGGCCTTCGGCCGCTCTTGTTCTTGTCCG
GTGAAGGGCAACTGCTCTCACCCGGACGACTTCGCGGGTGGCTGAACCTT
TCCGTTGCTACTCGGGCCTCTGCGAGCCGTGGAGTTGTTGCGTGTCAATA
GATGTACTGGTGCTGAAATCTACATCCGGCCGTGAAAAGCCCAGCGTCTC
CGCATGCTGGCCCAATAGATGCACTTGACCGAGTGTGGTGAGTGAGATAT
GAGAGTTCAATTTGGGAGTTTAGTTTAGTTGTAGTGTAGAGAAGGCTTGT
GCTTGTTGATGCCTGCAAACGCGCGTGACGTGCGCGCTTCTGCGTAGGGC
TTCCGTACCGTTTTCGCCGGGATAGGGTAGTGTTTCCACTGAACGAACCT
TGTTGTTTTCTTATTGCATTTTGCGCAATGCATCGGAGGAATTTTTGTTT
TGTCGCTGTTGGAAGATGAGCGAGCGAGCGAGTGCTCTTGCGGAGGAGGA
GGCACTACGCAGTACCATACATGCCCCACGTCTGTTCGTGGACGCGAGGG
TTTCTTGTACCAGGTATCTGTTCTTTCGCTTTATTGTCGCTGTCTTGAGG
TTTAACCACGTCGGCCTAGGTGCATGTTTGAAAAGGGCGGATCATTTCGG
AAGCCCTCCAGTCTAGATGTCCACTCACGCTACAGAGCTCGGGTTGCGCA
GGAAGGGCTTTCGATAATTTTAAACATACATTTTTTTTTGTTTGGATGTA
CGGCCCAGGTCGATCTTGTTTTCTTTGGCTGGTATCTTTGAAGCAAGGCG
CTCCTTCTAGAGGACGACTTGTTCCGACGGTTGTTCTTTGGAAGGCCGCG
CTGAAATAGCTTTCTCTGACTTCCAAAGTGTGTTGTTCCCGGCTGGCATC
TGGTGCTGCTGTTTTGAGGAGAAATATTGTGTGTTACCCCTTTGTTTTTG
TTTCCTTCGTGATGGCGTGTCAGGCTGGTCTCCGTTACCTGCTAGCCTTG
TTTGCAGATTTTCTCCGTCGTCCCTTGGTTTTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig98:80..3813+

>mRNA_E_fasciculatus_S2_contig98.17799.1 ID=mRNA_E_fasciculatus_S2_contig98.17799.1|Name=mRNA_E_fasciculatus_S2_contig98.17799.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=228bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig98:80..3813+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTGACTTCAAGGATCAGATGGCGAAGAAGTTGCAGGCGGCAGCTCG
GGGGTACATCCAGCGCAAGACTGGGATGGGCGGTAAGACGGCGGGCAAGA
AGCACAAGGCCGGGAAGGGCGGCAAGGCTGGAAAGGGTGGCAAGAAGGCC
AAGAAGAGCGAGGACATGAACGCCATGATCATCCAGGCGGCCTTCAGGAA
GTACAAGGAGTACAAGAAGAAGAACTGA
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