mRNA_E_fasciculatus_S2_contig9794.17795.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9794.17795.1
Unique NamemRNA_E_fasciculatus_S2_contig9794.17795.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9794.17795.1 vs.
Match: GLOBIN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE)

HSP 1 Score: 523 bits (1346), Expect = 1.700e-170
Identity = 298/334 (89.22%), Postives = 310/334 (92.81%), Query Frame = 1 
Query:    1 VLAQVPSAQVESIMGEHPLLPPIQETFKKGDVEAHVLSIGRRFPALCKLLATLVTASPPKSQEPEEGDXXXXXXXXXXXXXXXENDGGSNSAPFQIAFLVSLSISLVQRVLRMGEQAWAKLEEERAGVKRDDPSPTRRRASA---QESTTTT----GTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVIIRYIRPETAAEGLGVPILPLLFNEALLALGNRVNLHALNTKMDVALAPRNRHSEKGDGSPKPLLFNVRNPLNNGHGAKLHEDTVWAGVECLATFILDCGLFLPVAQA 981
            ++ Q+PSAQVE+IMGEHPLLPPIQ+TF KGDVEAHVLSIGRRFPALCKLLATLVTASPPKSQEPEEG XXXXXXXXXXXXXX E DG S+SAPFQ  FLVSLSISLVQRVLRMGEQAWAKLEEERAGVKRDDP PTRRRASA   QESTT T    GTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVI+RYI+PETAAEGLGVPILPLLFNEALLALGNRVNLHALNTK    +APR+R+S+KG GSPK LLFNVRNPLNNGHGAKLHEDTVWAGVECLATFILDCGLFLP AQA
Sbjct: 1080 IVGQIPSAQVETIMGEHPLLPPIQDTFNKGDVEAHVLSIGRRFPALCKLLATLVTASPPKSQEPEEG-XXXXXXXXXXXXXXKEIDGSSDSAPFQTPFLVSLSISLVQRVLRMGEQAWAKLEEERAGVKRDDPGPTRRRASAKTAQESTTHTNTAAGTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVIVRYIKPETAAEGLGVPILPLLFNEALLALGNRVNLHALNTK--TVVAPRSRNSDKGGGSPKTLLFNVRNPLNNGHGAKLHEDTVWAGVECLATFILDCGLFLPAAQA 1410
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BLAST of mRNA_E_fasciculatus_S2_contig9794.17795.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK6_ECTSI)

HSP 1 Score: 473 bits (1218), Expect = 1.910e-160
Identity = 261/337 (77.45%), Postives = 273/337 (81.01%), Query Frame = 1 
Query:    1 VLAQVPSAQVESIMGEHPLLPPIQETFKKGDVEAHVLSIGRRFPALCKLLATLVTASPPKSQEPEEGDXXXXXXXXXXXXXXXENDGGSNSAPFQIAFLVSLSISLVQRVLRMGEQAWAKLEEERAGVKRDDPSPTRRRASA---QESTTTT------GTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVIIRYIRPETAAEGLGVPILPLLFNEALLALGNRVNLHALNTKMDVALAPRNRHSEKGDGSPKPLLFNVRNPLNNGHGAKLHEDTVWAGVECLATFILDCGLFLPVAQAS 984
            ++ QVPSAQVE+IMGEHPLLPPIQ+TF KGDVEA+VLSIGRRFPALCKLLATLVTASPPKSQEPE                                           RVLRMGEQAWAKLEEERAGVKRDDPSPTRRRASA   QES T+T      GTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYR+MAVIIRYIRP+TAAEGLGVPILPLLFNEALLALGNRVNLHALNT     + PR+R+SEKG GSPKPLLFNVRNPLNNGHGAKLHEDTVWAGVECLATFILDCGLFLP AQ +
Sbjct:  247 IVGQVPSAQVETIMGEHPLLPPIQDTFNKGDVEAYVLSIGRRFPALCKLLATLVTASPPKSQEPE-------------------------------------------RVLRMGEQAWAKLEEERAGVKRDDPSPTRRRASATTAQESATSTNTSTADGTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRAMAVIIRYIRPDTAAEGLGVPILPLLFNEALLALGNRVNLHALNTTTKTDVGPRSRNSEKGGGSPKPLLFNVRNPLNNGHGAKLHEDTVWAGVECLATFILDCGLFLPAAQVA 540
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9794.17795.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
GLOBIN1.700e-17089.22domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.910e-16077.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9794contigE_fasciculatus_S2_contig9794:109..4779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size984
Hectar predicted targeting categoryother localisation
Exons5
Cds size984
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842622.5956726-CDS-E_fasciculatus_S2_contig9794:108..3031696842622.5956726-CDS-E_fasciculatus_S2_contig9794:108..303Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9794 109..303 +
1696842622.6073122-CDS-E_fasciculatus_S2_contig9794:2007..21601696842622.6073122-CDS-E_fasciculatus_S2_contig9794:2007..2160Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9794 2008..2160 +
1696842622.6178205-CDS-E_fasciculatus_S2_contig9794:2916..31741696842622.6178205-CDS-E_fasciculatus_S2_contig9794:2916..3174Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9794 2917..3174 +
1696842622.6286073-CDS-E_fasciculatus_S2_contig9794:3843..40491696842622.6286073-CDS-E_fasciculatus_S2_contig9794:3843..4049Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9794 3844..4049 +
1696842622.6461313-CDS-E_fasciculatus_S2_contig9794:4607..47791696842622.6461313-CDS-E_fasciculatus_S2_contig9794:4607..4779Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9794 4608..4779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9794.17795.1prot_E_fasciculatus_S2_contig9794.17795.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9794 109..4779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9794.17795.1

>prot_E_fasciculatus_S2_contig9794.17795.1 ID=prot_E_fasciculatus_S2_contig9794.17795.1|Name=mRNA_E_fasciculatus_S2_contig9794.17795.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=328bp
VLAQVPSAQVESIMGEHPLLPPIQETFKKGDVEAHVLSIGRRFPALCKLL
ATLVTASPPKSQEPEEGDGQQPQQQEEEKGKGKENDGGSNSAPFQIAFLV
SLSISLVQRVLRMGEQAWAKLEEERAGVKRDDPSPTRRRASAQESTTTTG
TLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAV
AQTPVQGGVRFAAYRSMAVIIRYIRPETAAEGLGVPILPLLFNEALLALG
NRVNLHALNTKMDVALAPRNRHSEKGDGSPKPLLFNVRNPLNNGHGAKLH
EDTVWAGVECLATFILDCGLFLPVAQAS
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mRNA from alignment at E_fasciculatus_S2_contig9794:109..4779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9794.17795.1 ID=mRNA_E_fasciculatus_S2_contig9794.17795.1|Name=mRNA_E_fasciculatus_S2_contig9794.17795.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4671bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9794:109..4779+ (Ectocarpus fasciculatus EfasUO2)
GTCCTTGCGCAGGTACCGTCGGCCCAGGTGGAGAGCATCATGGGCGAGCA
CCCGCTGCTACCCCCCATCCAGGAAACGTTCAAAAAGGGCGATGTCGAGG
CGCACGTCCTGTCGATCGGGAGGCGTTTCCCGGCACTGTGCAAGCTGCTG
GCCACGCTCGTTACGGCCTCGCCGCCAAAGTCTCAGGAGCCTGAGGTGCG
TGGTTGACTTTTCCAATAACCCAAAAAGGATACTGTACTATAATAGGAAA
GAAGGCGATCTTGTCCTCCAATAACCCAAAAATATACTTTGTATCAGGAA
AGAAGGCGATTTTCTAACAGCTCATGGCTTCGCTGTTACCCGCACGCCTT
GAAGTATTAATTGTCCTCCTAAACAGCCAACAATATAAAAATATGCGATT
AACCATATAGTATATTACATTGTTGTGGTTTTGGGTCTAAAGCGCTGCAG
CAGACGTGAAGATACGATACGAACTCTCTACTCTTGCACTGTTGCGACGA
GCAAGTTGTCCTCACGTACAGTAATGACGATGGAGGTAGGGGCACGTGTA
GGACCATGTGGACAGCATGACAGGTCTGGTAGAAGTAGAGAGAGGAAGTG
AAAGGAAGTGATCGGAGAGGGGCGAGGGCGGACAGCCACCGGGCATCAAG
ATCAACATCATGAACGGAAGTTCCTCCTCACTCCTCCTCACTCCTCCTCA
CTCATGACAGGGAGAGAAGTCTTAGATGAGTCCAGTCGGAGGGTTTCTCC
GACTGACGTTGGACGTTACAGACAGACATGGGAGGAGGCGTGTTAGTCCA
GGAGACATAAGTCCCACATCACATCACCCCCACAGGGTTGAGTGGTAATG
AAGTGATGAAGCTTGCTCTCCACCAGAGTTTAAGAAGTACGTGAAAGAGG
GACAGATTTGGGTATGCGACATTGATTGTACAGGACTGTCCTATGGCGGG
AGGGACAAAAATGTGATCATACTACATGTGTGGCTACAAGCCGTACAGGC
CGCTGTCAATGGTAACCAAGTACATGTCAATAGATCATAGTCTCCGGCCC
GAAGATTGTACAACCGAAATATGCCAATCAGCAACGGCGCAACAACACGC
CGTCCAAGGCAAAGATCCGGCATGTCAGGCCATTACGACCGTGGACCTTC
CAGTTCAGCTCAAGGACCTTCAAGTTCAGCTCGTGCACAAGCTGAACTCG
AAGCTCCTTGGTAGCAAGTGTCCTGACGTTCCTGACCTTCGCCTTTGGAC
GGCGTGTGACTGCGCCGTTGCTAATTGGCATAGATCGGTTCGAAACGAGC
GTGTTGAGTGACAGCGGAACGGTTGGGGACAGAGGTAAAATGAGGCGGCG
CTGACAGCAGTGCCAACGACAGTTGCTGCTTCATGCTTCATGGCGCCTAG
CACTCCTTCCTGCACCTCGATCTGCGGGGGCACGAGCCTTTCAGAGAAGT
TTTCTGATTTATATTTCGTGACCAGTATGTAGGTGCCGGACCCGTTGACG
TTACCAATCACCTGTTGCCCCGTGCCTTCACCCACAAGTAGCAGCCCGAG
TTGCCTGCCAAAGCCCATGACTCCAGGTCGTGTGTTTGTCATTGATGCAT
AGCATCGATCGCTAGAAACCGAGCCTACGTGCGTTTTTTTCTATTTTTGG
CCAATCATTTGTTGCCCCGTGCCTTCGCCCACGACTAGTAGCCCGAGTCG
CTTGCTTGCCAAAACCCATGACTCAGGTTGTGCGTTCGTCTCTCCTTTCG
CCCGATGCATGGTACCGATCGCTAGAACGCGAGCCTTGCCAGGGACTCGC
CCGCTGCTGGGTGGTGCTGATGTGGACTTGCGTCTATTTTTATTTTTATT
TTTATTTTTTTTAATCATACTCGCTCTTGTTCGCACGCGGTTCGTTTAGG
AAGGAGACGGGCAACAACCGCAACAACAGGAGGAGGAGAAGGGGAAGGGG
AAGGAGAACGACGGCGGCAGCAATTCCGCGCCGTTCCAAATAGCGTTCCT
TGTCTCGCTTTCGATATCGCTCGTGCAGAGGGTCCTGAGAATGGGCGAGC
AGGTGTGTGCGGCTTTGCGTTTTATTCCGTGTATGCTTGTTTTGTGACCA
TGAACCGCGCCGAGCGGCTGAGCAGTGAAAAACCGCCGGTATTTTACCAC
GGGACGGTATACCGTAGGACACTTTCTGTTCCGCGGGGTCTCCTGGCAAG
CGCGCCTGAGGCGGCCGAGGTAGAAAGCTTGGAGCAAAAGGGGTCTCGAT
GTGTGTGTTCAAATGTTTGCTGGAAATCCGTGAACTCCAACGGCCTCGCC
TGCCACTTACTGGGTTTGATACACTTACTATACGTGTTTTTTTCGATTGG
CATCAACCGCGGTACTGTACCCAGCTAGCTGACCAATGAATAAACGGCAA
TGTGCCTGTTTTTAGTTTTGAGCATCGACCGCGCTAAACGGCTGACCAAT
GAAAAAAGACGTCAGTCTCGTCGCGACTGAAAACAGAAGATGCGTCTATT
GGCCATTGCCATGATCTGGGACCCCGCGAGGGGGTGTCATGGGAGATGCT
GAGCTACCGTCCGGATTAGAGACAGAAACGATAACAGCGTGTGTGTATTC
TCTTTTTTCTTAGTACAAAACAACGAATCAATCCGTCTCTACCCACAGCA
CACATGAGGAGTCCAGGATATTATAGCAATGTATCCATAGCATTGTATTT
TTTTCTTTAATACCCGCCTCGTATCCACATGGATCTAGGAAATGATTGTG
TTTTTTTTTTTTTTCGGTGTTTTTCTTGATTTCGGTTCGACACACACCCG
CTTGCCAGGCCTGGGCCAAGCTCGAGGAAGAGCGGGCGGGCGTCAAGCGG
GACGACCCCAGCCCGACTCGCAGAAGAGCCTCCGCGCAGGAGTCCACCAC
CACCACCGGCACCCTGTCCCCCGAGCTAGCCGCTAGAGTGTCCGGTCTCC
TGTTGCCCTCCGCGGTGACCCTGCTGGAGGCCCTGGTCGCTAGCTCCAGG
CTCGAGAAGGCGATGGAGGACCGGCAAGGGACGGTGTGCCAGTGCATGGG
GCAAGCGGTCGCACAGGTAATCAATCGGCCGTGTCCGTGCCCGATCGCGG
TTGTGGGCGGTAGTGGCGTGTACGGCAGGGCTTTCGTCACGTTGTTGTGT
GGTGGTCGCGTGTGCTCATACGGGAGGGCTTGTCACGTTTTTGTATGGTG
GTTGCGTGTGCTAGTGCGTACGGGAGGGCTTGTCACGTGGCGGTTTGTGT
GAGGTAGTTGCGTGTGCTGTAAGCGTGTACGGAGCTGCGAGGGCTTGTCG
TATGCGTTCCACGACAGCTGCTAGCTGTAGGCAGCTTCTCTCTGTGGGTG
CTTGTTTTGCTGCTCCTGGCTGCTGTATCCACAGTCGTACAACGTCCGTT
CAGTCGGAAAGCGCGCCGAGTCTCTTTGCAGGCTCGCGCCCGCGCTTGAA
GCCCGTTCAGAGGCACCGATGCGTCCGCCACAGCGTTGGGTATGTACGTA
AATGCCCTGGCTCGTGCTCGCTAGTTTTCGAAGGAACCGCGACAATTATC
CCCCCCACTACTTGCCCACCTATGGCAAAAGTAGGAAGGAACGATAGGCA
GTTGTCGGTGATCGGTCCTGCGCGAACAATGCTCCGTGCTCTCGAGGACG
CATGGTCAATGGTCCAACAGCTAAGGCATTCCAAACATGAGCAAGCCCTT
TCTCCGCCCCCCTCCCCCCCCCACTTGCCGCACAGACGCCCGTCCAGGGC
GGAGTGAGGTTTGCGGCTTACCGCTCCATGGCGGTGATCATCCGGTACAT
CAGGCCGGAGACGGCGGCAGAGGGTCTCGGAGTGCCGATACTCCCTCTGC
TGTTCAACGAAGCGCTCCTTGCTCTCGGAAACCGCGTCAACCTCCACGCC
CTCAACACCAAGATGGATGTTGCACTTGCACCGCGAAACAGGTGAACTGA
GTCGTCAAGGATGGAGCTAAACACTAATACTCCCGTCTTTCGCTTTCAGC
CGGCCATCGAGGCGTTTGTTTCGTATAGTATGTCGATACTGCGCGGGTTG
AACCACCATCTGTATTCGTTAGTGGGTACCCCCCCCCGAATTTAAAAATG
TAGCTAGCCTTTTCGTTTCAGCCGGCCATCGAGTGTCAATTAGAAATATT
ATTTCCCCTTCTATTAGCTCGTTGTTGTTTTCGAGTACTGGCGTAACCAT
CTGTATTCTTTATTGCGGATCACCCCCCGTTTCCCAAAGATAATTGCTAC
TATTGTAATAGCTAGCCTTTTCGTTGTTTCAGCCGGCCGCCGAGTTGTAA
TTTTTGTTTGTGTGTGTTACGAGCTTGTTGTTTTTTGTCCATTGGCACGG
TAAACCGTTGGTATTCGTTGTTGATCACCCCCCCTTTTCGCGGTCTTTTC
TCGTTGCATCGTTCCTTTCTCTGCCCCCCCCCCCGCCCCCCCCCATCCCT
TTTTTCGCACCCGGCCGGATAAATCAACATGAACATGAACATGAACCAGA
CACAGCGAGAAGGGCGATGGCTCGCCGAAGCCGCTCCTGTTCAACGTGCG
GAACCCGCTCAACAACGGCCACGGCGCCAAGCTGCACGAGGACACGGTCT
GGGCGGGGGTAGAGTGCCTCGCGACGTTCATATTGGACTGTGGTCTATTC
CTCCCGGTGGCCCAGGCAAGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9794:109..4779+

>mRNA_E_fasciculatus_S2_contig9794.17795.1 ID=mRNA_E_fasciculatus_S2_contig9794.17795.1|Name=mRNA_E_fasciculatus_S2_contig9794.17795.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=984bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9794:109..4779+ (Ectocarpus fasciculatus EfasUO2)
GTCCTTGCGCAGGTACCGTCGGCCCAGGTGGAGAGCATCATGGGCGAGCA
CCCGCTGCTACCCCCCATCCAGGAAACGTTCAAAAAGGGCGATGTCGAGG
CGCACGTCCTGTCGATCGGGAGGCGTTTCCCGGCACTGTGCAAGCTGCTG
GCCACGCTCGTTACGGCCTCGCCGCCAAAGTCTCAGGAGCCTGAGGAAGG
AGACGGGCAACAACCGCAACAACAGGAGGAGGAGAAGGGGAAGGGGAAGG
AGAACGACGGCGGCAGCAATTCCGCGCCGTTCCAAATAGCGTTCCTTGTC
TCGCTTTCGATATCGCTCGTGCAGAGGGTCCTGAGAATGGGCGAGCAGGC
CTGGGCCAAGCTCGAGGAAGAGCGGGCGGGCGTCAAGCGGGACGACCCCA
GCCCGACTCGCAGAAGAGCCTCCGCGCAGGAGTCCACCACCACCACCGGC
ACCCTGTCCCCCGAGCTAGCCGCTAGAGTGTCCGGTCTCCTGTTGCCCTC
CGCGGTGACCCTGCTGGAGGCCCTGGTCGCTAGCTCCAGGCTCGAGAAGG
CGATGGAGGACCGGCAAGGGACGGTGTGCCAGTGCATGGGGCAAGCGGTC
GCACAGACGCCCGTCCAGGGCGGAGTGAGGTTTGCGGCTTACCGCTCCAT
GGCGGTGATCATCCGGTACATCAGGCCGGAGACGGCGGCAGAGGGTCTCG
GAGTGCCGATACTCCCTCTGCTGTTCAACGAAGCGCTCCTTGCTCTCGGA
AACCGCGTCAACCTCCACGCCCTCAACACCAAGATGGATGTTGCACTTGC
ACCGCGAAACAGACACAGCGAGAAGGGCGATGGCTCGCCGAAGCCGCTCC
TGTTCAACGTGCGGAACCCGCTCAACAACGGCCACGGCGCCAAGCTGCAC
GAGGACACGGTCTGGGCGGGGGTAGAGTGCCTCGCGACGTTCATATTGGA
CTGTGGTCTATTCCTCCCGGTGGCCCAGGCAAGT
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