mRNA_E_fasciculatus_S2_contig9782.17784.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9782.17784.1
Unique NamemRNA_E_fasciculatus_S2_contig9782.17784.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9782.17784.1 vs.
Match: Metallophos (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU33_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.760e-24
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:  127 HQRKCPPAVGFAGGFRDIPVGAPSSGRRKSTTEALIHALSEPLKPTPPYAVAAGGEGACA-GGGEFP 324
            HQRKCPPAVGF GGFRD+PVGAPSSGRRKSTTEALIHALSEPLKP+P +A  AG E +   GGGEFP
Sbjct:  337 HQRKCPPAVGFVGGFRDVPVGAPSSGRRKSTTEALIHALSEPLKPSPRHA--AGAEASVGLGGGEFP 401
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BLAST of mRNA_E_fasciculatus_S2_contig9782.17784.1 vs.
Match: Metallophos (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.940e-20
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:  133 RKCPPAVGFAGGFRDIPVGAPSSGRRKSTTEALIHALSEPLKPTPPYAVAAGGEGACA-GGGEFP 324
            RKCPPAVGF GGF D+PVGAPSSGRR STTEALIHALSEPLKP+P +A  AG E +   GGGEFP
Sbjct:  504 RKCPPAVGFVGGFWDVPVGAPSSGRRISTTEALIHALSEPLKPSPRHA--AGAEASVGLGGGEFP 566
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9782.17784.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Metallophos4.760e-2480.60domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Metallophos3.940e-2076.92domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9782contigE_fasciculatus_S2_contig9782:3841..4165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.1
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D7FU33
Model size325
KEGG rclassRC00002
KEGG koko:K01525,ko:K22132
KEGG ReactionR00125
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0031090,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805,GO:0098852
Exons1
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0371@2759
EC3.6.1.41
Cds size324
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842621.5145586-CDS-E_fasciculatus_S2_contig9782:3840..41641696842621.5145586-CDS-E_fasciculatus_S2_contig9782:3840..4164Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9782 3841..4164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9782.17784.1prot_E_fasciculatus_S2_contig9782.17784.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9782 3841..4164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9782.17784.1

>prot_E_fasciculatus_S2_contig9782.17784.1 ID=prot_E_fasciculatus_S2_contig9782.17784.1|Name=mRNA_E_fasciculatus_S2_contig9782.17784.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=108bp
QAPSSRSEGAADKTSSGGGGGGEKHSDDDKAAAEDASTQQQRHQRKCPPA
VGFAGGFRDIPVGAPSSGRRKSTTEALIHALSEPLKPTPPYAVAAGGEGA
CAGGGEFP
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mRNA from alignment at E_fasciculatus_S2_contig9782:3841..4165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9782.17784.1 ID=mRNA_E_fasciculatus_S2_contig9782.17784.1|Name=mRNA_E_fasciculatus_S2_contig9782.17784.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=325bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9782:3841..4165+ (Ectocarpus fasciculatus EfasUO2)
CAGGCACCGTCGTCTCGAAGTGAGGGGGCGGCGGACAAGACTTCTAGCGG
CGGCGGCGGGGGGGGGGAGAAGCACTCTGACGACGACAAGGCAGCGGCGG
AGGATGCCTCGACACAGCAGCAGCGCCATCAGCGAAAGTGTCCGCCGGCC
GTGGGGTTTGCCGGCGGCTTCCGGGACATCCCCGTCGGTGCCCCTTCCTC
CGGCCGGAGAAAATCCACCACGGAAGCGCTGATCCACGCCCTAAGCGAGC
CGCTCAAGCCAACCCCGCCCTACGCGGTGGCCGCCGGAGGAGAAGGAGCG
TGCGCTGGGGGAGGGGAGTTCCCCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9782:3841..4165+

>mRNA_E_fasciculatus_S2_contig9782.17784.1 ID=mRNA_E_fasciculatus_S2_contig9782.17784.1|Name=mRNA_E_fasciculatus_S2_contig9782.17784.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=324bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9782:3841..4165+ (Ectocarpus fasciculatus EfasUO2)
CAGGCACCGTCGTCTCGAAGTGAGGGGGCGGCGGACAAGACTTCTAGCGG
CGGCGGCGGGGGGGGGGAGAAGCACTCTGACGACGACAAGGCAGCGGCGG
AGGATGCCTCGACACAGCAGCAGCGCCATCAGCGAAAGTGTCCGCCGGCC
GTGGGGTTTGCCGGCGGCTTCCGGGACATCCCCGTCGGTGCCCCTTCCTC
CGGCCGGAGAAAATCCACCACGGAAGCGCTGATCCACGCCCTAAGCGAGC
CGCTCAAGCCAACCCCGCCCTACGCGGTGGCCGCCGGAGGAGAAGGAGCG
TGCGCTGGGGGAGGGGAGTTCCCC
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