mRNA_E_fasciculatus_S2_contig9780.17782.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9780.17782.1
Unique NamemRNA_E_fasciculatus_S2_contig9780.17782.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9780.17782.1 vs.
Match: Leucine (Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.500e-16
Identity = 47/69 (68.12%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:   13 ENARLKDGLEAANAINARLESEVKILNKTVMKPGPDVDSLVHSGAGQALKQRQAVTERVDDFLERAQER 219
            ENARL D               VKILNK VMKPGPD DSLV SG GQAL+QRQAVTERVDDFLER+QER
Sbjct: 1040 ENARLNDVXXXXXXXXXXXXXXVKILNKMVMKPGPDSDSLVPSGGGQALQQRQAVTERVDDFLERSQER 1108
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BLAST of mRNA_E_fasciculatus_S2_contig9780.17782.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP57_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.050e-14
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   76 EVKILNKTVMKPGPDVDSLVHSGAGQALKQRQAVTERVDDFLERAQER 219
            +VKILNK VMK GPD DSLV SG G ALKQRQAVTE VDDFLERAQER
Sbjct:  137 QVKILNKKVMKTGPDSDSLVPSGGGLALKQRQAVTETVDDFLERAQER 184
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BLAST of mRNA_E_fasciculatus_S2_contig9780.17782.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.090e-14
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   73 SEVKILNKTVMKPGPDVDSLVHSGAGQALKQRQAVTERVDDFLERAQER 219
            S+VKIL+K VMKP PD DS V SG  Q LKQRQAVTERVDDFLERAQER
Sbjct:  127 SKVKILHKKVMKPEPDSDSFVPSGGRQTLKQRQAVTERVDDFLERAQER 175
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BLAST of mRNA_E_fasciculatus_S2_contig9780.17782.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 8.900e-14
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   76 EVKILNKTVMKPGPDVDSLVHSGAGQALKQRQAVTERVDDFLERAQER 219
            +VKILNK VMK GPD DSLV SG G ALKQRQAVTE VDDFLERAQER
Sbjct:  260 QVKILNKKVMKIGPDSDSLVPSGGGLALKQRQAVTETVDDFLERAQER 307
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BLAST of mRNA_E_fasciculatus_S2_contig9780.17782.1 vs.
Match: Leucine (rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.540e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   85 ILNKTVMKPGPDVDSLVHSGAGQALKQRQAVTER-VDDFLERAQER 219
            ILNK VMKPGPD DSLV SG G ALKQRQAVTE  +DDFLERAQER
Sbjct:  831 ILNKKVMKPGPDSDSLVASGGGLALKQRQAVTETALDDFLERAQER 876
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BLAST of mRNA_E_fasciculatus_S2_contig9780.17782.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G3_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.610e-10
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   82 KILNKTVMKPGPDVDSLVHSGAGQALKQRQAV-TERVDDFLERAQER 219
            KI+NK V K GPD DSLV SG G ALKQRQAV TE VDDFLERAQER
Sbjct:  147 KIVNKMVAKTGPDSDSLVPSGGGLALKQRQAVVTETVDDFLERAQER 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9780.17782.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.280e-9
Identity = 38/47 (80.85%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   82 KILNKTVMKPGPDVDSLVHSGAGQALKQRQAVTER-VDDFLERAQER 219
            KILNK VMKPGPD DSLV S    ALKQRQAVTE  VDDFLERAQER
Sbjct:  857 KILNKKVMKPGPDSDSLVAS----ALKQRQAVTETAVDDFLERAQER 899
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9780.17782.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Leucine1.500e-1668.12Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized1.050e-1483.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.090e-1479.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.900e-1483.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Leucine1.540e-1182.61rich repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized1.610e-1078.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative2.280e-980.85Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9780contigE_fasciculatus_S2_contig9780:4344..5554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score83.6
Seed ortholog evalue4.3e-14
Seed eggNOG ortholog2880.D7FUA0
Model size220
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons3
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size219
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842621.3629308-CDS-E_fasciculatus_S2_contig9780:4343..44211696842621.3629308-CDS-E_fasciculatus_S2_contig9780:4343..4421Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9780 4344..4421 +
1696842621.3744774-CDS-E_fasciculatus_S2_contig9780:4657..47211696842621.3744774-CDS-E_fasciculatus_S2_contig9780:4657..4721Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9780 4658..4721 +
1696842621.3906157-CDS-E_fasciculatus_S2_contig9780:5476..55531696842621.3906157-CDS-E_fasciculatus_S2_contig9780:5476..5553Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9780 5477..5553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9780.17782.1prot_E_fasciculatus_S2_contig9780.17782.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9780 4344..5553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9780.17782.1

>prot_E_fasciculatus_S2_contig9780.17782.1 ID=prot_E_fasciculatus_S2_contig9780.17782.1|Name=mRNA_E_fasciculatus_S2_contig9780.17782.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=73bp
AANEENARLKDGLEAANAINARLESEVKILNKTVMKPGPDVDSLVHSGAG
QALKQRQAVTERVDDFLERAQER
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mRNA from alignment at E_fasciculatus_S2_contig9780:4344..5554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9780.17782.1 ID=mRNA_E_fasciculatus_S2_contig9780.17782.1|Name=mRNA_E_fasciculatus_S2_contig9780.17782.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1211bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9780:4344..5554+ (Ectocarpus fasciculatus EfasUO2)
GCTGCGAATGAAGAGAACGCCAGGCTTAAAGACGGTTTGGAAGCGGCAAA
TGCAATAAACGCCAGGCTGGAGTCCGAGGTACTGTGATTGTGCTAAACAG
TATGCAGCTGATTCAGAAACCTCTCTTTAAAAATGCTGGGTTTGATGAAT
TTAGTCCAAAATAGTCGAGAAGCTCACCACGAGTATGCACATGGTCGTTG
AGTAGTGCCACAGTCGTGGTAAAAGCTGCGTGGTGAGCCGTCATAACCGA
TGTTCACCGGCGGATGCCTACGTTTTACACCACCATGCTTCTTGCCGCCG
TGTTTGGTTTCCAGGTGAAAATCTTGAACAAAACGGTGATGAAGCCTGGG
CCGGACGTGGATAGCCTGGTGCACAGCGGTAAGTGCCATGGCAAGCTACG
CTACGCTGTGACGTTTGCCCGTTGGGCGGGGAAGCTCATTCTTGCGGATT
GAGCAAGGCTGACTCACTCTCGCTCTTAGCTGCTGCTGCTGATTGTGTTG
TAGCAAAAGGGATACACCATCCGACCATCCTAGCTGCCAGCGAGAACGTG
ATCGGCGATGGTTAGATACTGTTCCAGTGGGGAACATGCTCACCGCCACG
ACACCCAGAGTTTAATTCCGACAAATCAAGGTGTAGAGGTGGCATCCTCT
AGGGAAGTTCTCTGCATGGTGTGAGAAACGGAGTATGCTAAACACTTGGC
GGTTAAATATGCCCTTGTGGATAAAAACGTTACAATGGCGTTCCCCGCGC
CCTTGTGCATCACCTGGAGCAAGTCTGGAGAGTGCCATTGTCAACCGCTT
CCGCCGCGCTTGGCACGATGGGACCGCGGAACCATGCGCTACTACTCTCC
TTGCTCACATCTCGCTCTTGCAGTGCATGAGGTACTCCGCCATGATTCAG
TAGCACCGTTTCCCTGTCAAAGCCAGCCCACGGGGCCGACGGTGTCCGCA
GATTAATCCGATGGCTGTACGCCTGTTCGTTTTCATCTGATTGTTTCGTC
ACTCCTTATAACATTGCGCAAGCAGCCGATTGTGCTCTAAAACGAAGCCT
CATACTACGTCACCAGTCAAGACGCACGTGACCTGCGTTTAACACAAGAC
GTGTGTCCGGGTGCACTTCGCGGCCATCGACAGGGGCGGGGCAGGCTTTG
AAGCAGCGGCAAGCCGTAACCGAGAGAGTGGATGACTTTCTCGAGAGGGC
TCAAGAAAGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9780:4344..5554+

>mRNA_E_fasciculatus_S2_contig9780.17782.1 ID=mRNA_E_fasciculatus_S2_contig9780.17782.1|Name=mRNA_E_fasciculatus_S2_contig9780.17782.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9780:4344..5554+ (Ectocarpus fasciculatus EfasUO2)
GCTGCGAATGAAGAGAACGCCAGGCTTAAAGACGGTTTGGAAGCGGCAAA
TGCAATAAACGCCAGGCTGGAGTCCGAGGTGAAAATCTTGAACAAAACGG
TGATGAAGCCTGGGCCGGACGTGGATAGCCTGGTGCACAGCGGGGCGGGG
CAGGCTTTGAAGCAGCGGCAAGCCGTAACCGAGAGAGTGGATGACTTTCT
CGAGAGGGCTCAAGAAAGA
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