mRNA_E_fasciculatus_S2_contig9774.17772.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9774.17772.1
Unique NamemRNA_E_fasciculatus_S2_contig9774.17772.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9774.17772.1 vs.
Match: Kinesin (motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG6_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.420e-30
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 QDDGENSPP-VHNNGGPAPGGVGSPSKNIPRNPVASSPNKNKASALPTKXXXXXXXXXXXXXXXXXXXXXXXX----AQPSPSGGKQARKVADSASSSARESGASGEK 309
            QDDGENSPP VHNNGGPAPGGVGSPSKNIPRNPVASSPNKNKASALPTKXXXXXXXXXXXXXXXXXXXXXXXX    AQP+PSGGKQARKVADSASSSARESGASGEK
Sbjct:  708 QDDGENSPPMVHNNGGPAPGGVGSPSKNIPRNPVASSPNKNKASALPTKXXXXXXXXXXXXXXXXXXXXXXXXXAGSAQPNPSGGKQARKVADSASSSARESGASGEK 815
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BLAST of mRNA_E_fasciculatus_S2_contig9774.17772.1 vs.
Match: Kinesin-like (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB3_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.770e-27
Identity = 76/104 (73.08%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:    7 DGENSPP-VHNNGGPAPGGVGSPSKNIPRNPVASSPNKNKASALPTKXXXXXXXXXXXXXXXXXXXXXXXXA--QPSPSGGKQARKVADSASSSARESGASGEK 309
            DGENSPP VH+NGGPAPGGVGSPSKNIPRNPVASSPNKNKASALPTK XXX                       QP+P GGKQARKVADSASSSARESGASGEK
Sbjct:  709 DGENSPPTVHSNGGPAPGGVGSPSKNIPRNPVASSPNKNKASALPTKKXXXASNSGYPPIAATAAAVATAAGSPQPNPLGGKQARKVADSASSSARESGASGEK 812
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9774.17772.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Kinesin1.420e-3094.44motor domain-containing protein n=1 Tax=Ectocarpus... [more]
Kinesin-like1.770e-2773.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9774contigE_fasciculatus_S2_contig9774:521..835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score127.1
Seed ortholog evalue4.8e-27
Seed eggNOG ortholog2880.D8LDG6
Model size315
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
Cds size315
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.639181-CDS-E_fasciculatus_S2_contig9774:520..8351696842620.639181-CDS-E_fasciculatus_S2_contig9774:520..835Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9774 521..835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9774.17772.1prot_E_fasciculatus_S2_contig9774.17772.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9774 521..835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9774.17772.1

>prot_E_fasciculatus_S2_contig9774.17772.1 ID=prot_E_fasciculatus_S2_contig9774.17772.1|Name=mRNA_E_fasciculatus_S2_contig9774.17772.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
QDDGENSPPVHNNGGPAPGGVGSPSKNIPRNPVASSPNKNKASALPTKKK
KKASNSGYPPIAGGGGATAAGSAQPSPSGGKQARKVADSASSSARESGAS
GEKNE
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mRNA from alignment at E_fasciculatus_S2_contig9774:521..835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9774.17772.1 ID=mRNA_E_fasciculatus_S2_contig9774.17772.1|Name=mRNA_E_fasciculatus_S2_contig9774.17772.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9774:521..835+ (Ectocarpus fasciculatus EfasUO2)
CAGGACGACGGAGAGAACAGCCCCCCGGTCCACAACAACGGCGGCCCCGC
CCCAGGGGGCGTCGGATCCCCCTCGAAAAACATTCCGCGGAACCCCGTAG
CCTCCTCGCCCAACAAGAACAAGGCCTCCGCGCTCCCCACCAAGAAGAAA
AAGAAGGCTTCAAACTCCGGGTACCCCCCCATCGCTGGCGGCGGCGGCGC
AACCGCTGCCGGTTCGGCTCAACCGAGCCCGTCCGGGGGGAAGCAGGCGC
GGAAGGTGGCCGATTCCGCTAGCAGCAGCGCCAGGGAAAGCGGGGCTTCA
GGCGAGAAGAATGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9774:521..835+

>mRNA_E_fasciculatus_S2_contig9774.17772.1 ID=mRNA_E_fasciculatus_S2_contig9774.17772.1|Name=mRNA_E_fasciculatus_S2_contig9774.17772.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9774:521..835+ (Ectocarpus fasciculatus EfasUO2)
CAGGACGACGGAGAGAACAGCCCCCCGGTCCACAACAACGGCGGCCCCGC
CCCAGGGGGCGTCGGATCCCCCTCGAAAAACATTCCGCGGAACCCCGTAG
CCTCCTCGCCCAACAAGAACAAGGCCTCCGCGCTCCCCACCAAGAAGAAA
AAGAAGGCTTCAAACTCCGGGTACCCCCCCATCGCTGGCGGCGGCGGCGC
AACCGCTGCCGGTTCGGCTCAACCGAGCCCGTCCGGGGGGAAGCAGGCGC
GGAAGGTGGCCGATTCCGCTAGCAGCAGCGCCAGGGAAAGCGGGGCTTCA
GGCGAGAAGAATGAG
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