mRNA_E_fasciculatus_S2_contig9772.17769.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9772.17769.1
Unique NamemRNA_E_fasciculatus_S2_contig9772.17769.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9772.17769.1 vs.
Match: FZ (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG5_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.260e-40
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 PFRDVEWASGRKPEIVCTPSIKGAAAPSLQPWGRRRRRYTDDKMATRTGFGVVPVVAAVTGLLLAVCWENVVL 219
            PFRDVEWA GR+PEIVCTPSIKGAAAPSLQPWGRRRRRY DDK A RTGFGVVPVVAAVTGLLLA+CWENVVL
Sbjct:  244 PFRDVEWAGGRQPEIVCTPSIKGAAAPSLQPWGRRRRRYNDDKTAARTGFGVVPVVAAVTGLLLALCWENVVL 316
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9772.17769.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
FZ1.260e-4091.78domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9772contigE_fasciculatus_S2_contig9772:3871..4092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score145.2
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D7FLG5
Model size222
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG free text desc.Fz domain
EggNOG OGs2CB5P@1,2RXQZ@2759
Ec32 ortholog descriptionFrizzled domain
Ec32 orthologEc-17_001260.1
Cds size222
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.487447-CDS-E_fasciculatus_S2_contig9772:3870..40921696842620.487447-CDS-E_fasciculatus_S2_contig9772:3870..4092Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9772 3871..4092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9772.17769.1prot_E_fasciculatus_S2_contig9772.17769.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9772 3871..4092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9772.17769.1

>prot_E_fasciculatus_S2_contig9772.17769.1 ID=prot_E_fasciculatus_S2_contig9772.17769.1|Name=mRNA_E_fasciculatus_S2_contig9772.17769.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=74bp
PFRDVEWASGRKPEIVCTPSIKGAAAPSLQPWGRRRRRYTDDKMATRTGF
GVVPVVAAVTGLLLAVCWENVVL*
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mRNA from alignment at E_fasciculatus_S2_contig9772:3871..4092-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9772.17769.1 ID=mRNA_E_fasciculatus_S2_contig9772.17769.1|Name=mRNA_E_fasciculatus_S2_contig9772.17769.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=222bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9772:3871..4092- (Ectocarpus fasciculatus EfasUO2)
CCGTTTCGAGACGTGGAGTGGGCCAGCGGTAGGAAACCCGAGATTGTTTG
CACCCCGAGCATCAAGGGGGCCGCCGCCCCGTCGCTACAACCGTGGGGGC
GCCGCCGCCGCCGCTACACCGACGATAAGATGGCGACGAGAACGGGGTTC
GGGGTAGTCCCCGTTGTTGCGGCCGTTACGGGTTTGCTGCTGGCGGTGTG
TTGGGAAAATGTCGTCCTTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9772:3871..4092-

>mRNA_E_fasciculatus_S2_contig9772.17769.1 ID=mRNA_E_fasciculatus_S2_contig9772.17769.1|Name=mRNA_E_fasciculatus_S2_contig9772.17769.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=222bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9772:3871..4092- (Ectocarpus fasciculatus EfasUO2)
CCGTTTCGAGACGTGGAGTGGGCCAGCGGTAGGAAACCCGAGATTGTTTG
CACCCCGAGCATCAAGGGGGCCGCCGCCCCGTCGCTACAACCGTGGGGGC
GCCGCCGCCGCCGCTACACCGACGATAAGATGGCGACGAGAACGGGGTTC
GGGGTAGTCCCCGTTGTTGCGGCCGTTACGGGTTTGCTGCTGGCGGTGTG
TTGGGAAAATGTCGTCCTTTGA
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