mRNA_E_fasciculatus_S2_contig9767.17763.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9767.17763.1
Unique NamemRNA_E_fasciculatus_S2_contig9767.17763.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9767.17763.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G251_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 4.770e-50
Identity = 93/130 (71.54%), Postives = 104/130 (80.00%), Query Frame = 3 
Query:   18 SPPAEDQATAAQREKKEADDDRTVALFNSVMLTDGLEVLKHLRSSSEKAVAHVIRFAPNNGGALVWYKPGHQQDAKHSRVPLDEIIEVELEAGILWISAGDERVGFETSRPEDADLLYKAICILRHRCHA 407
            SP  EDQAT AQR K+EA +DR VA FNSVML DGL+VLKH R SS+KA + VIRF P+ GGALVW KP  Q  AK SRVPLD I +VELEA I+WISAGDERVGFETS+ EDADL+Y+AICIL  RCHA
Sbjct:   53 SPVVEDQATIAQRAKQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA 182
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BLAST of mRNA_E_fasciculatus_S2_contig9767.17763.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ4_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.320e-31
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 3 
Query:   60 KKEADDDRTVALFNSVMLTDGLEVLKHLRSSSEKAVAHVIRFAPNN--GGALVWYKPGHQQDAKHSRVPLDEIIEVELEAGILWISAGDERVGFETSRPEDADLLYKAICILRHRCHA 407
            +++  DD  VA+FN VML DGL+VLK LRS  + A + VIRF P+   GG+LVW+KP + Q AK+SRVPLD   +VELEA I+WISA DERVG ETS+ EDA+++Y+AICIL  RC+A
Sbjct:  227 REKVHDDHVVAVFNRVMLADGLKVLKQLRSC-KAACSRVIRFVPDYLFGGSLVWHKPVNPQGAKNSRVPLDVTTQVELEACIVWISASDERVGCETSKLEDAEIMYEAICILVDRCNA 343
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9767.17763.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.770e-5071.54protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G251... [more]
Uncharacterized3.320e-3159.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9767contigE_fasciculatus_S2_contig9767:1636..4235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1650
Hectar predicted targeting categoryother localisation
Exons3
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.102146-UTR-E_fasciculatus_S2_contig9767:1635..17391696842620.102146-UTR-E_fasciculatus_S2_contig9767:1635..1739Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9767 1636..1739 +
1696842620.1156669-UTR-E_fasciculatus_S2_contig9767:2556..25591696842620.1156669-UTR-E_fasciculatus_S2_contig9767:2556..2559Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9767 2557..2559 +
1696842620.157734-UTR-E_fasciculatus_S2_contig9767:2995..42351696842620.157734-UTR-E_fasciculatus_S2_contig9767:2995..4235Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9767 2996..4235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842620.1336513-CDS-E_fasciculatus_S2_contig9767:2559..27421696842620.1336513-CDS-E_fasciculatus_S2_contig9767:2559..2742Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9767 2560..2742 +
1696842620.146406-CDS-E_fasciculatus_S2_contig9767:2875..29951696842620.146406-CDS-E_fasciculatus_S2_contig9767:2875..2995Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9767 2876..2995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9767.17763.1prot_E_fasciculatus_S2_contig9767.17763.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9767 2560..2995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9767.17763.1

>prot_E_fasciculatus_S2_contig9767.17763.1 ID=prot_E_fasciculatus_S2_contig9767.17763.1|Name=mRNA_E_fasciculatus_S2_contig9767.17763.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=101bp
MLTDGLEVLKHLRSSSEKAVAHVIRFAPNNGGALVWYKPGHQQDAKHSRV
PLDEIIEVELEAGILWISAGDERVGFETSRPEDADLLYKAICILRHRCHA
*
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mRNA from alignment at E_fasciculatus_S2_contig9767:1636..4235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9767.17763.1 ID=mRNA_E_fasciculatus_S2_contig9767.17763.1|Name=mRNA_E_fasciculatus_S2_contig9767.17763.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2600bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9767:1636..4235+ (Ectocarpus fasciculatus EfasUO2)
GTCCGTTGACCCGGGTCTCGCCGCCAGCGGAGGACCAGGCGACGGCCGCC
CAACGCGAAAAGAAAGAGGCGGACGACGACCGCACTGTGGCTTTGTTCAA
CAGCGTGAGTCTCTTCTGGTTACCCAACAGTCCCCTCCGCTCCCCTCACT
TGTCAAGTATATTACCGCTTCAAGGTTGCTTGCGGAAGGTCGGTGTCTTT
ATCGATGCCTCTGCACGATGTCTCAAAATTTGATGGCTCAGCGGCTTTTG
TTTTTCTCCGAGACACATTGGCTTTAAGAAAGACACAAGATGTAGCACCA
CCCGGGGCCTTTGTTTTGTTTTGCCATATTCTGGCTGCACTTTTGGCCGG
ACCCCTTCAGAATCATCCCGCAACCATGGTAAAGGGCGTCTTACACACTT
GTTGCAATCGATCTCAGGCAAGTTGTTGGTCCCTCCAGAACAAAGGGTGA
ACAACGGTACGTTGGTGCCACCATACCGCTGATATTGCTGCAGCTCACAG
CAGTGCCAAACAATGTCGGACGCATGAGCAGGCAGAGAAACCCTTTTGCC
TGCAACGGAAATGCTCACGAGCAGACAATTTTCACCAGCAGGCAATCAAG
AAGTGGTTGCTCGTTGGTGTTGTCTAATTTCTATGTGGAACTATGTGGAG
GAGTTGGTTCCGGGGTCGCGGACGACGACACAAACAATGCCCAAACTCCT
GCATTCATGACCAAATTGCACGTGCCTACAGGGATATTCGCGTCTGAAAC
GAGTGACTTGATCCTCAGGCTAGGCGTGGGGTCGGCCCTTTGGGTGCCAA
AGCAATAGTCTATCCCCGCATCTCCTGAAAACATCGTTTGTTGTTGCATA
CTCTGGGCACTCTCTATTCCCTCTCACCCTCCTGCTACAAGTAACGAAAC
ACGTGCCACCCGGTTGTGAAGGTCATGCTCACGGACGGCCTCGAGGTCCT
GAAGCACCTACGCAGCAGCTCCGAGAAGGCGGTTGCCCACGTGATCCGCT
TCGCACCCAACAACGGAGGGGCTCTGGTGTGGTACAAGCCTGGCCACCAG
CAAGACGCAAAGCATAGCAGGGTCCCACTCGACGAGATCATCGAGGTGGA
GCTGGAGGTGAGGTTAATAGATATCACACGCCCCTTCCGCAGTGACGGCA
CACGTTGGAACCTCCGACGAATGCCTCCAATTTGAACGATTTGGTCCCTG
CCTCCCCTAACTCGGCGGGCTTCTCGTGTTGGTCGACCAGGCGGGCATCT
TGTGGATCTCGGCGGGTGACGAGCGTGTCGGGTTTGAGACATCCAGACCA
GAGGACGCTGATTTATTGTACAAGGCGATCTGTATCCTTCGCCACAGGTG
CCACGCATGAGCCCCAAAAGGTATCCGGGGCGCGTATTCGAGTGAAATCC
TGCGCGGTCAAGGCGGCGCTGCTAAACACAGCCGTGCTATTCGTGTGTAG
CGACGAGCACGGCAGGGAAGCGTTCACGAGGCATGGGTGTATCGAGGCAT
GAGTGTATGCCCCGGTGGACTATGTGACCCGCGACGTTTTCCTGTGGCCT
CAAATGCAGCGTGAGCTCGATGGGTCATTGAACGTATTTTTTGGCAGGGT
CGTGCTCGAGGTCATGCGTAGCCTCGGCTTGGACGAGGGGGCGTGCAAGC
CGTAACACCGTGCCGCCGCGTGCCAACAGTCGACACGCCACGCCACATAT
GATCGCACGCGCCGGTGCCCTTCGCGGCTCGATAGCATATCATCGTGCGC
TTGGAAGCACATGGATAGTGCAAGCGGCCTCTTTTAGGTAGATTGGTTTT
TCGTTTTTCGTATGCTGTCTTGTAACAGGAAGGACCTTTACAATAGATCG
TCCTGGAGCTGGCTCAGTAAGTCCAGAGCGCAAGTAAGAACATGTGATTA
AGCTTGTCCGATAACCTCGACTCTGTCGGAGGGGCACCCGGTCAATCGTA
GTCTTCGTTCCTTCGCGGTAAGGATTCTCCCGCTCAACTCCTGGGCCCTC
TCACGTCGGTTTATCCCTGCACTTTTCGTCTGCGCTCTCAAGTGTGTACC
GCAGTTTGTGTCCTGCTGGAGGGCTCTTGCCAGTTCGTAAGCTTCCGAGG
GAGGCAGTGGGCAAAGGATCAAATCCGATCGCTCCCTTGCAGGGATTTCA
AGCACAACACTGGGAAGATAGACAGCGGGTTTTCAAGTTTTTCTGTGTTG
CTTTGCTCTATGCATAGGACACGTAGATTTTATTCTTTCCCATGGTGTGG
GGAATGACATTATTGTCCGTGCACCCCCGGTGTTGAATACACCGAGGCCG
TAGGCATGCACGGTTAGAATCATGCGGTTTCTATTTCTTAATTGGTGATC
TTGGATCCGTTTAATTTGTTTTCGTTTTATTGTCGGGTGGCAGCGGGGGC
GATACGCCGGACACTATTCGACGTCATCCAAAGTTGATGCAAGTTGTCAT
CATTGGCGGGTCCAACTTCTGTCCTCACGAATCAAAGCTGGTATGTCACA
GTCCAGTATTGCCATCACAATTGACCAACGTCGGTACAGTTTCGTCAATG
CAGATCGAACTTGGGTGACAGTATAGCGTAGTTTGGTGTCTTCAGCTTGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9767:1636..4235+

>mRNA_E_fasciculatus_S2_contig9767.17763.1 ID=mRNA_E_fasciculatus_S2_contig9767.17763.1|Name=mRNA_E_fasciculatus_S2_contig9767.17763.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9767:1636..4235+ (Ectocarpus fasciculatus EfasUO2)
ATGCTCACGGACGGCCTCGAGGTCCTGAAGCACCTACGCAGCAGCTCCGA
GAAGGCGGTTGCCCACGTGATCCGCTTCGCACCCAACAACGGAGGGGCTC
TGGTGTGGTACAAGCCTGGCCACCAGCAAGACGCAAAGCATAGCAGGGTC
CCACTCGACGAGATCATCGAGGTGGAGCTGGAGGCGGGCATCTTGTGGAT
CTCGGCGGGTGACGAGCGTGTCGGGTTTGAGACATCCAGACCAGAGGACG
CTGATTTATTGTACAAGGCGATCTGTATCCTTCGCCACAGGTGCCACGCA
TGA
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