mRNA_E_fasciculatus_S2_contig9756.17750.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9756.17750.1
Unique NamemRNA_E_fasciculatus_S2_contig9756.17750.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9756.17750.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9756contigE_fasciculatus_S2_contig9756:631..2984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size588
Hectar predicted targeting categoryother localisation
Exons2
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.185914-UTR-E_fasciculatus_S2_contig9756:630..6611696842619.185914-UTR-E_fasciculatus_S2_contig9756:630..661Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9756 631..661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.2027605-CDS-E_fasciculatus_S2_contig9756:661..7021696842619.2027605-CDS-E_fasciculatus_S2_contig9756:661..702Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9756 662..702 +
1696842619.2138946-CDS-E_fasciculatus_S2_contig9756:2470..29841696842619.2138946-CDS-E_fasciculatus_S2_contig9756:2470..2984Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9756 2471..2984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9756.17750.1prot_E_fasciculatus_S2_contig9756.17750.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9756 662..2984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9756.17750.1

>prot_E_fasciculatus_S2_contig9756.17750.1 ID=prot_E_fasciculatus_S2_contig9756.17750.1|Name=mRNA_E_fasciculatus_S2_contig9756.17750.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=185bp
MWGLEPGIGGASASCTPAKKGENHEEHPGPPLHGCVLDKETERQEPQGVK
KMAMSMGTKRPQRSQLSDERKSPVRSPPSPKLCMKALGLVAVSGFTTVRW
LEGTCLELSRLCREEAPWTVKLRTRKMPPGFPGRQTKMQVPENRLVQRRR
IMGMVLGKGACINKEGFTWPTGVKKVRFEPFRADL
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mRNA from alignment at E_fasciculatus_S2_contig9756:631..2984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9756.17750.1 ID=mRNA_E_fasciculatus_S2_contig9756.17750.1|Name=mRNA_E_fasciculatus_S2_contig9756.17750.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9756:631..2984+ (Ectocarpus fasciculatus EfasUO2)
CCGGAGTTTACCAATCCTCGCCCACAGGCGTATGTGGGGCCTTGAACCTG
GGATTGGTGGCGCCAGCGCCAGGTAAGCTGTGGGATGAGTGATGGTACTG
CTGTATCCAGAGTTTGTTTTCTTCAGGCCAAAACCAAATCAGGGTCGTAG
GCTCGACCCTATGAGTTGGCATGTATCAGTGTCCACAGGCTACTGATTTA
CCCTACACAATGTCCTATTGTCACAAATGAATACCCTTCGAGCTAGCTCG
ATCTATTGATGCACTTTAAACACACACATTTTTACTCGCACAAACCCGAC
CGCACAGAATGACGTGCAAGAATCTATGGTATGGTTTCCTGCAGAACTGC
CCCGCGTATGAAGTCCCTCTAAGGGTAAATGTGTCGTTGCCTTGCCTTTT
TAAGGAAAACGACTAGGTATCCGTCTTCCAGCAGGGCCGTGATTCAGAGC
TGGATCAGACGCACTGCCGCTATTGAGAGATACGCATTCGAAGCAGAATG
CGGGTAGTCTCAACAGTTTGTGCCGCCTAAGTTTTATCCTAGTTCATCAA
CAGGTGTATTGTTTGGGGTTTGGGTCTGCGATGTTCTTTTTAGGTTGTTC
CCCCCAACAAATCGTTTAAGATGTTCATATCTATACATATCACATACATA
TCGAAAGTACAACTCCAGTGTAAAACACGCGAACCAACCGTGGCCATAGC
GAAACATTTTCTCGTCTCTTTCGTCAACTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCGTTTATTTGAACAAAATGCCTCTTTCGTAGACTACCGAAAAATGGACG
ACATGAGTACCGTAATTACAGTAAGAGCTCCTTGTCCGAAAAGCCGACTT
CAAACCTTTCCACCCGAGGGAACTCCTGCCGGAGAACAGCACGTTCCTCT
CTCGTTTCTCTTGCGTTACCCCGCAGAAGCGTCAAGGAAAAGAGAAGGAG
GGAGACGTGGACGCCTACTTTGACCTTCATCAAACCGCATGCTTGCGTGT
AGACACCGCGTCTACCTTAGTCTCATAAAATGAACAGTTTGTTGGGCCAC
CCACTACACTCGTCAGCCATATAATATTTTGGAACACACGGAGGAACACA
CGAAGGTAGTCTTTGTAGACCGTTCCTGCGTGACTGCAAGCCTGATGAAC
CTGGGGTCGCAAACGCTGTGGCAGACTGCTTGCTGTCAGGTCGTGCAATA
TACTCGCACCGTTGTTGGCGGGGATCGTTATTCTGAACGCGTCGCCGACA
ACGAACCCGCAGTAGATGTGACCATCAAGAACACTGCTGGCGCTTACCAC
ACGTACCGTAAGGTTGCGAGTCACCGCACGGTCCGGAGTCATCGCACAGG
GGTGCGATGCAAAATATACGGCTTAATGATTTACTTCGATTTCCCAGGGT
CCGGAGTCACCGCACAGGGGTGCGATGACTCGCAACCTACAGTAGGATAA
TTGAGTTTCCAGCGATTTCAGGGCAACTTTCACCCCTGCAACCATGCCAG
TGCTGGCATGTTAGCTCTGCTGTATTGGTAGGTCGTCGTCGCACACCACA
TGTGGAGGTATGAAAGAAATGAAACGCATTGGTATTTGTATCGGATCCGT
AAACTTGAACATTGTCCATTCAATCAAGACCGCACATACTGGAGTCATCG
CACAGGGGTGCGATGCAGATTAATGGCAAAAACGTTCAAGAAACGACCGC
ATGGGGGTGCGGTGACTCGCAACGTTACGGTATATGTTGAAGAGTGACCC
CACCCCTTCACCCCCCTTTTCCTCAACGTCCGCTCGAAAGCTGTACACCG
GCCAAGAAGGGAGAGAACCACGAAGAACATCCCGGTCCTCCGTTACATGG
CTGCGTCCTCGACAAGGAGACAGAGCGCCAAGAACCACAGGGCGTCAAGA
AAATGGCGATGTCTATGGGCACCAAGCGCCCTCAGAGGTCGCAGCTTTCG
GATGAACGGAAGTCTCCGGTAAGATCCCCGCCGTCGCCCAAGCTGTGCAT
GAAGGCCCTTGGGTTGGTGGCGGTGAGTGGCTTCACCACAGTAAGGTGGC
TCGAAGGGACCTGCCTTGAGCTCAGCAGACTGTGTCGGGAGGAAGCGCCG
TGGACAGTGAAGCTTCGGACTCGGAAAATGCCGCCGGGATTTCCTGGTAG
GCAGACGAAAATGCAGGTGCCCGAAAACAGGCTAGTGCAGCGGCGGCGGA
TCATGGGGATGGTGCTGGGGAAGGGCGCATGCATCAACAAGGAAGGCTTC
ACCTGGCCGACGGGGGTCAAGAAGGTGCGCTTCGAGCCGTTCCGGGCAGA
CCTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9756:631..2984+

>mRNA_E_fasciculatus_S2_contig9756.17750.1 ID=mRNA_E_fasciculatus_S2_contig9756.17750.1|Name=mRNA_E_fasciculatus_S2_contig9756.17750.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=555bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9756:631..2984+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGGGCCTTGAACCTGGGATTGGTGGCGCCAGCGCCAGCTGTACACC
GGCCAAGAAGGGAGAGAACCACGAAGAACATCCCGGTCCTCCGTTACATG
GCTGCGTCCTCGACAAGGAGACAGAGCGCCAAGAACCACAGGGCGTCAAG
AAAATGGCGATGTCTATGGGCACCAAGCGCCCTCAGAGGTCGCAGCTTTC
GGATGAACGGAAGTCTCCGGTAAGATCCCCGCCGTCGCCCAAGCTGTGCA
TGAAGGCCCTTGGGTTGGTGGCGGTGAGTGGCTTCACCACAGTAAGGTGG
CTCGAAGGGACCTGCCTTGAGCTCAGCAGACTGTGTCGGGAGGAAGCGCC
GTGGACAGTGAAGCTTCGGACTCGGAAAATGCCGCCGGGATTTCCTGGTA
GGCAGACGAAAATGCAGGTGCCCGAAAACAGGCTAGTGCAGCGGCGGCGG
ATCATGGGGATGGTGCTGGGGAAGGGCGCATGCATCAACAAGGAAGGCTT
CACCTGGCCGACGGGGGTCAAGAAGGTGCGCTTCGAGCCGTTCCGGGCAG
ACCTT
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