mRNA_E_fasciculatus_S2_contig9722.17723.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9722.17723.1
Unique NamemRNA_E_fasciculatus_S2_contig9722.17723.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9722.17723.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9722contigE_fasciculatus_S2_contig9722:391..1027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size406
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.1572206-CDS-E_fasciculatus_S2_contig9722:391..7561696842617.1572206-CDS-E_fasciculatus_S2_contig9722:391..756Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9722 392..756 -
1696842617.1691315-CDS-E_fasciculatus_S2_contig9722:987..10271696842617.1691315-CDS-E_fasciculatus_S2_contig9722:987..1027Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9722 988..1027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9722.17723.1prot_E_fasciculatus_S2_contig9722.17723.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9722 392..1027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9722.17723.1

>prot_E_fasciculatus_S2_contig9722.17723.1 ID=prot_E_fasciculatus_S2_contig9722.17723.1|Name=mRNA_E_fasciculatus_S2_contig9722.17723.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
LQHRVPGAARVTRASSTETDLAWCNLHCYPKRCVRVRRQKLRATTDRMNH
QNSPWASDGGFQHHHQQAAPAAPAAPAGTGPTPTPGEQQQRQGWLMAEQP
AGVGGWGGSSGGGGGGNQAFEDAMDRFGGMTLGSN
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mRNA from alignment at E_fasciculatus_S2_contig9722:391..1027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9722.17723.1 ID=mRNA_E_fasciculatus_S2_contig9722.17723.1|Name=mRNA_E_fasciculatus_S2_contig9722.17723.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=637bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9722:391..1027- (Ectocarpus fasciculatus EfasUO2)
CTGCAACACCGAGTACCCGGAGCAGCGAGAGTAACACGAGGTATTGGAAA
GGGGGAACGGCGGAAGACGGCCGGAGATTTACCGTCGTGACTGCTGCTCG
CTGTTGGCACGCGATATTGTACAGCAGACTTGTTTTGAAAAAGGCGGCTT
GCGCGGGTCCCGCTTTCTTCAACTTTCCTCTCTCCCCTGCCTCATCAAAA
CTCCGAACTCACGACGCTACCTACACCGTTTGCCCACCCACCCCCCCACG
CATACGTCGCCGCCCACACAGCCTCTTCAACAGAGACTGACCTTGCTTGG
TGCAACTTGCACTGCTACCCCAAGCGCTGCGTGCGTGTTCGGCGCCAAAA
ACTCCGCGCCACGACAGACAGAATGAATCATCAGAATTCGCCCTGGGCAA
GCGATGGTGGTTTCCAACATCACCATCAGCAAGCAGCACCAGCAGCACCA
GCAGCACCCGCAGGAACGGGCCCCACACCAACTCCCGGAGAGCAGCAGCA
GCGTCAAGGCTGGCTAATGGCCGAGCAGCCTGCCGGCGTGGGAGGTTGGG
GTGGAAGCAGCGGCGGCGGCGGCGGCGGCAATCAAGCTTTCGAGGACGCG
ATGGACCGGTTCGGTGGGATGACTCTGGGGTCCAATG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9722:391..1027-

>mRNA_E_fasciculatus_S2_contig9722.17723.1 ID=mRNA_E_fasciculatus_S2_contig9722.17723.1|Name=mRNA_E_fasciculatus_S2_contig9722.17723.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9722:391..1027- (Ectocarpus fasciculatus EfasUO2)
CTGCAACACCGAGTACCCGGAGCAGCGAGAGTAACACGAGCCTCTTCAAC
AGAGACTGACCTTGCTTGGTGCAACTTGCACTGCTACCCCAAGCGCTGCG
TGCGTGTTCGGCGCCAAAAACTCCGCGCCACGACAGACAGAATGAATCAT
CAGAATTCGCCCTGGGCAAGCGATGGTGGTTTCCAACATCACCATCAGCA
AGCAGCACCAGCAGCACCAGCAGCACCCGCAGGAACGGGCCCCACACCAA
CTCCCGGAGAGCAGCAGCAGCGTCAAGGCTGGCTAATGGCCGAGCAGCCT
GCCGGCGTGGGAGGTTGGGGTGGAAGCAGCGGCGGCGGCGGCGGCGGCAA
TCAAGCTTTCGAGGACGCGATGGACCGGTTCGGTGGGATGACTCTGGGGT
CCAAT
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