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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9704.17709.1 vs.
Match: Myb-like (DNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ8_ECTSI) HSP 1 Score: 353 bits (906), Expect = 1.520e-108 Identity = 321/418 (76.79%), Postives = 328/418 (78.47%), Query Frame = 1
Query: 1 QGEVGNRWADIAKRLTGRTENAVKIRWKALNRRQRDARNKAAAAATSPA-PTGHRMLPRPTAA-APNGPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQKGGVSGARAALDTPAATTASGVAGPGGIPMSFSGLPPSSSSSLASIKPNLTPAEAAVIHAGQGQRSLSYAAAFAAASGATSSSSSPGYPINDAAAGAA-TCGSLGRIDRPPGVGVGTGFPHESGQAVAGSSCGGG---GEGKSTRQQWSQKGVGGEASSFDDRAPLTGSGLAAXXXXXXXXXXXXXMVPAVQGAPAPEGARTSPSPRYPFAPGDGGGGG---DERPAXXXXXXXXXXXXXXXRLHRLCAALANVEAMDKMHRRG 1227
QGEVGNRWADIAKRLTGRTENAVKIRWKALNRRQRDARNKAAAAA SPA PTGHR+LPRP A A N PLSXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RAALDTPAA ASGVAGPGG+ MSFS LP SSSLA IKPNLTPAEA IHA Q +RSLSY +AFAAAS ATS S PGYPINDA+AGAA TC SLGRIDRPPGVGVG GF ES QAVAGS CGGG GEGKS RQ WSQKGVGGEASSFDDRAPLTGSGLAAXXXXXXXX MVPAV+GA APEGARTSPS RYPFA GDG G +ERPA LHRLCAALANVEAMD MHRRG
Sbjct: 218 QGEVGNRWADIAKRLTGRTENAVKIRWKALNRRQRDARNKAAAAAASPAAPTGHRLLPRPAGAGASNDPLSXXXXXXXXXXXXXGRGAVDGREKVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RAALDTPAA--ASGVAGPGGMSMSFSNLP--LSSSLADIKPNLTPAEAGAIHAEQARRSLSYPSAFAAASAATSPS--PGYPINDASAGAAATCASLGRIDRPPGVGVGAGFQQESEQAVAGSCCGGGREGGEGKSGRQHWSQKGVGGEASSFDDRAPLTGSGLAAXXXXXXXXVSGSGMVPAVKGAAAPEGARTSPSRRYPFASGDGSGXXXXXEERPAGNGGKMEGAGDGG---LHRLCAALANVEAMDNMHRRG 621
BLAST of mRNA_E_fasciculatus_S2_contig9704.17709.1 vs.
Match: Uncharacterized (protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804P794_MAIZE) HSP 1 Score: 55.8 bits (133), Expect = 9.400e-5 Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 7 EVGNRWADIAKRLTGRTENAVKIRWKALNRRQRDARNKAAAAATSPAP 150
EVGNRWA+IAKRL GRTEN++K W A RRQ R A+A+TS P
Sbjct: 20 EVGNRWAEIAKRLPGRTENSIKNHWNATKRRQFARRRSRASASTSKGP 67
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 286.2 |
| Seed ortholog evalue | 3e-74 |
| Seed eggNOG ortholog | 2880.D8LSJ8 |
| Model size | 1848 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| EggNOG free text desc. | RNA polymerase II transcription regulator recruiting activity |
| EggNOG OGs | COG5147@1,KOG0048@2759 |
| Ec32 ortholog description | SANT/Myb domain transcription factor |
| Ec32 ortholog | Ec-09_001910.1 |
| Cds size | 1509 |
| COG Functional cat. | ADK |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842615.913831-UTR-E_fasciculatus_S2_contig9704:317..479 | 1696842615.913831-UTR-E_fasciculatus_S2_contig9704:317..479 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9704 318..479 + |
| 1696842615.9408638-UTR-E_fasciculatus_S2_contig9704:1988..2165 | 1696842615.9408638-UTR-E_fasciculatus_S2_contig9704:1988..2165 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig9704 1989..2165 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842615.929538-CDS-E_fasciculatus_S2_contig9704:479..1988 | 1696842615.929538-CDS-E_fasciculatus_S2_contig9704:479..1988 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9704 480..1988 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9704.17709.1 >prot_E_fasciculatus_S2_contig9704.17709.1 ID=prot_E_fasciculatus_S2_contig9704.17709.1|Name=mRNA_E_fasciculatus_S2_contig9704.17709.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=503bp
MLPRPTAAAPNGPLSSSSSSSSSSLSDAGGGRGAVDGREKARGGMMVGPG
GGGGGRATVARSSSASSSSSSASSSSAAAALGGGGSSSSFPKAASRRQKG
GVSGARAALDTPAATTASGVAGPGGIPMSFSGLPPSSSSSLASIKPNLTP
AEAAVIHAGQGQRSLSYAAAFAAASGATSSSSSPGYPINDAAAGAATCGS
LGRIDRPPGVGVGTGFPHESGQAVAGSSCGGGGEGKSTRQQWSQKGVGGE
ASSFDDRAPLTGSGLAAAAAAAASAGTGSGMVPAVQGAPAPEGARTSPSP
RYPFAPGDGGGGGDERPAGGGGGKMEGAGGGDGRLHRLCAALANVEAMDK
MHRRGGGAAAAAGTASSSRASPKRAGLEGGGGRRSGRSTPSREEGKQQQQ
QVGSKSPGAAAAAAASRAKRARDDGAGVGKAQASAGGAAAAAQGGGSPSK
VASDPPPAKRAAVSPANTGAAVPTSCSPPTAASSPAAAPAAAAVAGSVAS
HD* back to topmRNA from alignment at E_fasciculatus_S2_contig9704:318..2165+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9704.17709.1 ID=mRNA_E_fasciculatus_S2_contig9704.17709.1|Name=mRNA_E_fasciculatus_S2_contig9704.17709.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1848bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9704:318..2165+ (Ectocarpus fasciculatus EfasUO2)
CAGGGAGAGGTCGGTAACCGGTGGGCTGACATCGCGAAACGCTTGACGGG
GAGGACGGAAAACGCGGTAAAGATCCGCTGGAAAGCCCTGAACCGGCGCC
AGCGGGACGCGCGAAACAAAGCCGCCGCGGCGGCGACTTCTCCCGCCCCT
ACCGGGCACCGGATGCTGCCCCGTCCCACCGCCGCTGCCCCCAACGGCCC
TCTGTCATCGTCATCGTCGTCGTCGTCGTCGTCGCTGTCCGACGCCGGCG
GCGGCAGGGGTGCCGTGGATGGGCGAGAAAAGGCGAGGGGGGGTATGATG
GTCGGGCCTGGAGGCGGAGGCGGAGGGAGGGCTACTGTCGCTCGATCATC
GTCGGCATCGTCTTCCTCCTCCTCCGCTTCCTCGTCTTCCGCTGCCGCCG
CCCTTGGAGGCGGTGGTTCCTCCTCCTCCTTCCCCAAAGCCGCATCTCGG
AGGCAAAAAGGCGGGGTCAGCGGGGCTCGGGCGGCGTTGGATACACCGGC
GGCGACGACGGCGTCCGGCGTGGCGGGACCGGGAGGGATTCCGATGAGCT
TTTCGGGCTTGCCGCCGTCGTCGTCGTCGTCGTTGGCGAGCATCAAGCCG
AACTTGACGCCGGCGGAGGCGGCGGTTATCCACGCGGGGCAAGGACAACG
CTCGCTCTCGTATGCCGCCGCCTTTGCCGCCGCTAGCGGGGCAACCTCCT
CCTCCTCCTCCCCGGGCTACCCGATCAACGACGCCGCCGCGGGCGCCGCG
ACCTGCGGGTCTTTGGGGAGAATAGACCGGCCCCCCGGCGTCGGGGTCGG
CACGGGTTTCCCACACGAATCCGGGCAGGCGGTAGCGGGCAGCAGCTGCG
GGGGCGGGGGAGAAGGGAAGAGCACCCGCCAGCAGTGGTCACAGAAGGGT
GTCGGCGGCGAAGCGTCGTCGTTCGACGACCGGGCCCCCTTGACCGGGTC
CGGGTTGGCGGCCGCTGCCGCCGCCGCCGCCTCCGCCGGTACTGGTTCGG
GGATGGTCCCCGCCGTCCAGGGGGCGCCGGCGCCGGAAGGCGCGCGGACC
TCGCCGTCTCCCCGGTATCCTTTCGCGCCCGGCGACGGCGGCGGCGGGGG
CGACGAGCGCCCGGCGGGCGGCGGCGGCGGCAAGATGGAGGGCGCAGGTG
GCGGCGACGGTCGCCTGCACCGCCTGTGCGCGGCTCTGGCCAACGTCGAG
GCCATGGACAAAATGCACAGGCGAGGAGGCGGTGCTGCCGCCGCCGCCGG
CACGGCATCATCATCCCGAGCCTCGCCCAAGCGGGCAGGGCTCGAGGGTG
GCGGCGGTAGGCGTAGCGGCCGCTCGACCCCGTCCAGGGAGGAGGGAAAG
CAGCAGCAGCAGCAAGTCGGGAGCAAGTCGCCGGGCGCCGCCGCCGCCGC
CGCTGCTTCGCGCGCGAAACGCGCTAGGGACGATGGTGCTGGGGTCGGCA
AGGCGCAAGCATCGGCAGGAGGAGCGGCGGCGGCGGCGCAGGGCGGAGGG
TCACCGAGTAAGGTAGCGTCCGATCCTCCTCCGGCTAAGAGAGCGGCCGT
GTCCCCGGCCAACACCGGTGCCGCTGTGCCAACCTCATGCTCACCACCGA
CCGCCGCCTCCAGCCCGGCCGCCGCTCCGGCCGCAGCGGCTGTGGCCGGC
AGCGTTGCGTCTCATGATTAGAGACTAGTTCGTCGTCGTGAGGGGTCTGT
GTCTTCGGATAGATATGTGCGGGTTGGGGGTGGGATGTGTCGACTAATCG
TAGAACGAGCCGTAGTCCGTAGTAGCTCCTTTCTGTCGATTTCGCGACGA
AGGAGGGCAGTAAAGCCTGCCCAATTACGGCATCAGTTTTGGGGGCCC back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9704:318..2165+ >mRNA_E_fasciculatus_S2_contig9704.17709.1 ID=mRNA_E_fasciculatus_S2_contig9704.17709.1|Name=mRNA_E_fasciculatus_S2_contig9704.17709.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1509bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9704:318..2165+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGCCCCGTCCCACCGCCGCTGCCCCCAACGGCCCTCTGTCATCGTC
ATCGTCGTCGTCGTCGTCGTCGCTGTCCGACGCCGGCGGCGGCAGGGGTG
CCGTGGATGGGCGAGAAAAGGCGAGGGGGGGTATGATGGTCGGGCCTGGA
GGCGGAGGCGGAGGGAGGGCTACTGTCGCTCGATCATCGTCGGCATCGTC
TTCCTCCTCCTCCGCTTCCTCGTCTTCCGCTGCCGCCGCCCTTGGAGGCG
GTGGTTCCTCCTCCTCCTTCCCCAAAGCCGCATCTCGGAGGCAAAAAGGC
GGGGTCAGCGGGGCTCGGGCGGCGTTGGATACACCGGCGGCGACGACGGC
GTCCGGCGTGGCGGGACCGGGAGGGATTCCGATGAGCTTTTCGGGCTTGC
CGCCGTCGTCGTCGTCGTCGTTGGCGAGCATCAAGCCGAACTTGACGCCG
GCGGAGGCGGCGGTTATCCACGCGGGGCAAGGACAACGCTCGCTCTCGTA
TGCCGCCGCCTTTGCCGCCGCTAGCGGGGCAACCTCCTCCTCCTCCTCCC
CGGGCTACCCGATCAACGACGCCGCCGCGGGCGCCGCGACCTGCGGGTCT
TTGGGGAGAATAGACCGGCCCCCCGGCGTCGGGGTCGGCACGGGTTTCCC
ACACGAATCCGGGCAGGCGGTAGCGGGCAGCAGCTGCGGGGGCGGGGGAG
AAGGGAAGAGCACCCGCCAGCAGTGGTCACAGAAGGGTGTCGGCGGCGAA
GCGTCGTCGTTCGACGACCGGGCCCCCTTGACCGGGTCCGGGTTGGCGGC
CGCTGCCGCCGCCGCCGCCTCCGCCGGTACTGGTTCGGGGATGGTCCCCG
CCGTCCAGGGGGCGCCGGCGCCGGAAGGCGCGCGGACCTCGCCGTCTCCC
CGGTATCCTTTCGCGCCCGGCGACGGCGGCGGCGGGGGCGACGAGCGCCC
GGCGGGCGGCGGCGGCGGCAAGATGGAGGGCGCAGGTGGCGGCGACGGTC
GCCTGCACCGCCTGTGCGCGGCTCTGGCCAACGTCGAGGCCATGGACAAA
ATGCACAGGCGAGGAGGCGGTGCTGCCGCCGCCGCCGGCACGGCATCATC
ATCCCGAGCCTCGCCCAAGCGGGCAGGGCTCGAGGGTGGCGGCGGTAGGC
GTAGCGGCCGCTCGACCCCGTCCAGGGAGGAGGGAAAGCAGCAGCAGCAG
CAAGTCGGGAGCAAGTCGCCGGGCGCCGCCGCCGCCGCCGCTGCTTCGCG
CGCGAAACGCGCTAGGGACGATGGTGCTGGGGTCGGCAAGGCGCAAGCAT
CGGCAGGAGGAGCGGCGGCGGCGGCGCAGGGCGGAGGGTCACCGAGTAAG
GTAGCGTCCGATCCTCCTCCGGCTAAGAGAGCGGCCGTGTCCCCGGCCAA
CACCGGTGCCGCTGTGCCAACCTCATGCTCACCACCGACCGCCGCCTCCA
GCCCGGCCGCCGCTCCGGCCGCAGCGGCTGTGGCCGGCAGCGTTGCGTCT
CATGATTAG back to top
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