mRNA_E_fasciculatus_S2_contig966.17670.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig966.17670.1
Unique NamemRNA_E_fasciculatus_S2_contig966.17670.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig966.17670.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G748_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 1.460e-111
Identity = 217/260 (83.46%), Postives = 221/260 (85.00%), Query Frame = 1 
Query:    1 MNHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWLPSLFCKMCVGVLIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDEXXXXXXXXXXXXXXXXXXXXXXXXXVPGAXXXXXXXXXXXXXXXXXASVASNTAHAGEGTEAAAASPQEAREAAAK-PVAAGAEVTEADAAPSKMDVEEEEGVSPPAAPVTAAAPAVPL 777
            MNHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEW PS FCKMC+GVLIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDE XXXXXXXXXXXXXXXXXXXXXX  VPGA  XXXXXXXXXXXXXXX                               PVAAGAEVTEADAAPSKMDVE E+GVSPPAAPVTA+APA+PL
Sbjct:    1 MNHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWRPSFFCKMCIGVLIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDEDXXXXXXXXXXXXXXXXXXXXXXP-VPGAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVAAGAEVTEADAAPSKMDVEGEKGVSPPAAPVTASAPAIPL 259
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BLAST of mRNA_E_fasciculatus_S2_contig966.17670.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S1X6_HETAK)

HSP 1 Score: 148 bits (373), Expect = 3.370e-41
Identity = 66/141 (46.81%), Postives = 93/141 (65.96%), Query Frame = 1 
Query:    1 MNHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWLPSLFCKMCVGVLIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDE 423
            M+H +  +G EC CC+DD++     NYVEY+  E  EWLP+ FC+ CV  L+ +Q+ I+ + L  + CKA+Q+RML EGPP +V DKTAL+C +G  V  LW+  D+       SA L+G+ +G+ RQ WWDEK AF F+E
Sbjct:    1 MSHNSPEDGAECLCCYDDVD---SSNYVEYKASEDGEWLPAKFCQTCVNQLLANQYHIWVNKLETSNCKAEQRRMLKEGPPVNVKDKTALECPDGSEVFRLWYSSDQA----EHSAKLDGSLEGDERQAWWDEKKAFLFEE 134
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BLAST of mRNA_E_fasciculatus_S2_contig966.17670.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S1X0_HETAK)

HSP 1 Score: 148 bits (373), Expect = 2.770e-40
Identity = 66/141 (46.81%), Postives = 93/141 (65.96%), Query Frame = 1 
Query:    1 MNHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWLPSLFCKMCVGVLIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDE 423
            M+H +  +G EC CC+DD++     NYVEY+  E  EWLP+ FC+ CV  L+ +Q+ I+ + L  + CKA+Q+RML EGPP +V DKTAL+C +G  V  LW+  D+       SA L+G+ +G+ RQ WWDEK AF F+E
Sbjct:    1 MSHNSPEDGAECLCCYDDVD---SSNYVEYKASEDGEWLPAKFCQTCVNQLLANQYHIWVNKLETSNCKAEQRRMLKEGPPVNVKDKTALECPDGSEVFRLWYSSDQA----EHSAKLDGSLEGDERQAWWDEKKAFLFEE 134
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BLAST of mRNA_E_fasciculatus_S2_contig966.17670.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5F2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.990e-37
Identity = 66/139 (47.48%), Postives = 85/139 (61.15%), Query Frame = 1 
Query:    7 HGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWLPSLFCKMCVGVLIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHSLWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDE 423
            H    EG EC  C DDI+      YVEYR G G  W P  FC  CV  L+ +QW  Y D LAKA+CKA+Q+R+L  GPP  ++D+  L C EG+ V  LW+    G + +  SA L GA +G+AR+ WWDEKL F+F+E
Sbjct:    7 HSAPAEGKECMVCMDDID---MEKYVEYRVGAGGPWKPCGFCVTCVETLLATQWQKYVDQLAKASCKAEQRRLLDRGPPITIYDRNGLPCPEGQDVDMLWY----GRDKQEYSAKLAGALEGQARRDWWDEKLQFKFEE 138
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig966.17670.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.460e-11183.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical3.370e-4146.81protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical2.770e-4046.81protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized1.990e-3747.48protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig966contigE_fasciculatus_S2_contig966:17156..19935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeApicomplexa
Stop1
Start1
Seed ortholog score118.6
Seed ortholog evalue4.3e-24
Seed eggNOG ortholog5827.XP_004224035.1
Model size783
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E3BH@1,2SAF7@2759,3KAZ5@422676,3YAPW@5794,3YZQS@5819
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011060.1
Cds size783
Best tax levelHaemosporida
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842611.8504364-CDS-E_fasciculatus_S2_contig966:17155..176021696842611.8504364-CDS-E_fasciculatus_S2_contig966:17155..17602Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig966 17156..17602 -
1696842611.8666978-CDS-E_fasciculatus_S2_contig966:17895..179761696842611.8666978-CDS-E_fasciculatus_S2_contig966:17895..17976Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig966 17896..17976 -
1696842611.8811967-CDS-E_fasciculatus_S2_contig966:18468..185161696842611.8811967-CDS-E_fasciculatus_S2_contig966:18468..18516Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig966 18469..18516 -
1696842611.895067-CDS-E_fasciculatus_S2_contig966:18740..188441696842611.895067-CDS-E_fasciculatus_S2_contig966:18740..18844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig966 18741..18844 -
1696842611.905498-CDS-E_fasciculatus_S2_contig966:19832..199351696842611.905498-CDS-E_fasciculatus_S2_contig966:19832..19935Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig966 19833..19935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig966.17670.1prot_E_fasciculatus_S2_contig966.17670.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig966 17156..19935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig966.17670.1

>prot_E_fasciculatus_S2_contig966.17670.1 ID=prot_E_fasciculatus_S2_contig966.17670.1|Name=mRNA_E_fasciculatus_S2_contig966.17670.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=261bp
MNHGTCPEGMECACCFDDIEGGTDGNYVEYRTGEGKEWLPSLFCKMCVGV
LIKSQWSIYEDTLAKATCKAQQKRMLGEGPPTHVHDKTALKCEEGESVHS
LWFVGDEGGEPKIQSALLEGAPQGEARQIWWDEKLAFQFDEDDDEDEAGG
NTTTAAKTVTASTPPPVPGAPSPTPVPPAPASDSPAAASVASNTAHAGEG
TEAAAASPQEAREAAAKPVAAGAEVTEADAAPSKMDVEEEEGVSPPAAPV
TAAAPAVPLD*
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mRNA from alignment at E_fasciculatus_S2_contig966:17156..19935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig966.17670.1 ID=mRNA_E_fasciculatus_S2_contig966.17670.1|Name=mRNA_E_fasciculatus_S2_contig966.17670.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2780bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig966:17156..19935- (Ectocarpus fasciculatus EfasUO2)
ATGAATCACGGAACATGCCCGGAGGGGATGGAGTGCGCATGCTGCTTCGA
TGACATCGAGGGTGGTACCGATGGAAACTACGTGGAGTACAGGACTGGCG
AGGGTGAGGACCACCGCTACACTAAAGATTACTACTGACCCCTATGCATC
CTACCCATTCAGTAATAGACTACCGTAACATACGATACCGCCCTCTCCCT
AGTCCTATTTCCAAGGTTCATTTGCTCTACAACGAGGAGGATATTGCAGT
CGATCGATACATTTTTTGAATGCCTTTGTTTTTATCTCTTGCGGAGTAAT
CGAGGTTTGAAATCGATACCGGGGGGTGTGCTATCTTGTGTCACCTCATT
GGTAGGTACTTCAGTAGGTCTATTAGAGGTTGATGCGCGTGAAGGAACCG
CGGCGGAAAGCAGACGGCTTGTCTATCACGTGGTCTTCGTACTCGATAAC
CATTATTTCATAAAAAATAATTGAAGTATGCCTGCCCCCCTACTCGGAAG
TGATCTCCGGTCAATGGCGACGGCACTACTCCACAGCAGTCAGAGTGTAG
GTCTGCACACAAAGTTGTAACCTTGCAGCCAAAACAGCAGCCGTCGTGGC
GTATGTGTGGCTGGATGCCACCGAGTTCCTTGCAGATGCGGATGTGACAG
CATCGCCTACTACTTGCATGTTACAACATCTGCCAGACCTTTTCATAGTA
GTGCCGCATCGCGTTTCAAGCACCGACCTCGACTGCACTCGAGAAACGGA
GCTCTAGTCTTTTTAGTATTTCACCTTCGCAGCCCTGTGTCCTCGCTGTT
CTCTCAAGCCGAGCACGGAGAGGGAATGATGTATTTTTTGGAGTTCAAGA
GATCTTCTGCCCATGCTCATCTTTCTCCCGCACATACGTCTCCCCTCTCT
TTGTCCGTGTGCCTTTGCATGTGACTCCGTGTCGTCCCCCCGGTGCATTC
CTGTCATTATCCCTCGTCTTGGTTTTCGTCGTTGCCAACCCACTTTTTCG
CTGTCTATTTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCACGCACCGCAGGTAAGGAAT
GGCTCCCATCGTTGTTTTGCAAGATGTGCGTCGGGGTTCTCATCAAGAGT
CAGTGGTCCATCTACGAGGACACTTTGGCGAAGGCTACGTGCAAGGTGTG
TTGTGGGTTTTCTGCCGTGTATTCTACACGCGGCCGTAGGTTTGAGCCAG
TGCCGTCCGAAGAACATGCAGTCGCCCCTAGCCGCCTGCCCACAACACGC
ACAACTGTCTTCCGACCGCAAGAGCGCACGTTGTTCGGCGTTCTCTGTTA
CTCGTTGTGTACGTCGGAATAATACCTGAAAGGCATCCATCCCCCTCCCC
TTGTCCCGAAATGACCCAGGCACAGCAGAAGCGAATGCTAGGGGAGGGGC
CTCCAACGCACGTACACGTGAGTACCGCACTCGCGTCCATCGATTGCGAG
AATATGGCGTGGTGGAGGGATACATGAAAAACGTGGGGATGCTCGCACGC
GTTTCCCTGTGCGGCTTATTGCTGCCCATGTTAAATCGTATTATGGCTTG
CTTGCGTGGTGGCGTTGTTTCGTCAGAGAGAAAGGGTCGGCGACGAAGGC
ACTTGTGTTCTCTGGGTCCAGGAGTGCTGCGGCTGTGGCGATTATGTTGA
AACATTAAGTAAGCCTTTGCCTTCGCGTACATGGAAGGTGTGGTGCGGAG
CTTGCCGGCGTGGGAGCTTCAGAGTGGGTCTTGCGTCATGAGGACTCGGC
ACGTGGCCAGTGAGTTTTGCGACACGTTCAAAGTGTCAACACCGTGGGCA
TACTTTTGCTACATAGTTTTGCCCCCCAAGGGGGGGTATGTCGCTTTGTT
GCACGCAACCTGCCGCCCTATTTAACTGTTAATAGTGACACCTCGCCTTC
CTCCAACAGGACAAAACAGCTCTCAAGTGTGAAGAGGGCGAGAGCGTGCA
CTCGTTGTGGTTTGTTGGAGACGAGGGCGGTGAGCCCAAGGTAAGCCTCT
CGCAAACCGCCTCTCTACGCGGCATACTCGAAAACATTTGATTTTGAGTG
GTCTCGCTGATGTTTTGCAGTTTTGGTCAAGAAGAGGAGCAGTGGTTCTG
GGCTGCCGCCTGTTCAGAGAATCAAGACAAGGTCGCGGACTAGTCAGGGG
CATGTTACGAGAGAGATAGAGACCCCATGCGTACAGGAGCCTCGGTGTGG
CAGCTCTACCGCTCTGAACTTCTGCTTCGCCCTCCCGTTGTCCGTGTTGG
CATACTGCTGTTATTGACCACACCTACCTCAAGATCCAATCTGCGCTGCT
AGAAGGGGCTCCGCAGGGTGAAGCCCGACAGATCTGGTGGGACGAGAAGC
TAGCGTTTCAGTTCGACGAGGACGACGACGAAGACGAGGCGGGGGGAAAC
ACCACCACCGCTGCCAAGACCGTGACTGCCTCGACACCACCCCCGGTGCC
CGGTGCACCATCTCCCACCCCCGTTCCTCCTGCACCTGCTAGTGATTCCC
CTGCTGCTGCTTCGGTTGCCAGCAATACTGCGCACGCAGGAGAGGGTACA
GAAGCCGCGGCGGCGAGCCCACAAGAAGCGCGGGAGGCAGCAGCTAAACC
GGTTGCTGCTGGCGCAGAGGTGACCGAGGCAGATGCGGCTCCCTCGAAGA
TGGACGTCGAGGAAGAGGAAGGGGTTTCGCCACCTGCCGCGCCAGTGACC
GCCGCTGCACCTGCGGTTCCATTAGACTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig966:17156..19935-

>mRNA_E_fasciculatus_S2_contig966.17670.1 ID=mRNA_E_fasciculatus_S2_contig966.17670.1|Name=mRNA_E_fasciculatus_S2_contig966.17670.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=783bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig966:17156..19935- (Ectocarpus fasciculatus EfasUO2)
ATGAATCACGGAACATGCCCGGAGGGGATGGAGTGCGCATGCTGCTTCGA
TGACATCGAGGGTGGTACCGATGGAAACTACGTGGAGTACAGGACTGGCG
AGGGTAAGGAATGGCTCCCATCGTTGTTTTGCAAGATGTGCGTCGGGGTT
CTCATCAAGAGTCAGTGGTCCATCTACGAGGACACTTTGGCGAAGGCTAC
GTGCAAGGCACAGCAGAAGCGAATGCTAGGGGAGGGGCCTCCAACGCACG
TACACGACAAAACAGCTCTCAAGTGTGAAGAGGGCGAGAGCGTGCACTCG
TTGTGGTTTGTTGGAGACGAGGGCGGTGAGCCCAAGATCCAATCTGCGCT
GCTAGAAGGGGCTCCGCAGGGTGAAGCCCGACAGATCTGGTGGGACGAGA
AGCTAGCGTTTCAGTTCGACGAGGACGACGACGAAGACGAGGCGGGGGGA
AACACCACCACCGCTGCCAAGACCGTGACTGCCTCGACACCACCCCCGGT
GCCCGGTGCACCATCTCCCACCCCCGTTCCTCCTGCACCTGCTAGTGATT
CCCCTGCTGCTGCTTCGGTTGCCAGCAATACTGCGCACGCAGGAGAGGGT
ACAGAAGCCGCGGCGGCGAGCCCACAAGAAGCGCGGGAGGCAGCAGCTAA
ACCGGTTGCTGCTGGCGCAGAGGTGACCGAGGCAGATGCGGCTCCCTCGA
AGATGGACGTCGAGGAAGAGGAAGGGGTTTCGCCACCTGCCGCGCCAGTG
ACCGCCGCTGCACCTGCGGTTCCATTAGACTAG
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