mRNA_E_fasciculatus_S2_contig9657.17667.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9657.17667.1
Unique NamemRNA_E_fasciculatus_S2_contig9657.17667.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9657.17667.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR29_ECTSI)

HSP 1 Score: 568 bits (1463), Expect = 2.300e-198
Identity = 273/283 (96.47%), Postives = 281/283 (99.29%), Query Frame = 3 
Query:    3 VVKITDSWEGNPVTLGLKHLVPGFWDIWHQLGSPPVEKPPYKVVKRALGYVIREYAPRMATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYFVTGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPMPTAMGLEPTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILMHNSVACFTKAGKLAMSILYHRPKFIGIGNEVFVELDPEDGVTEEVVEGKVGGGTW 851
            VVKITD+WEGNPVTLGLKHLVPGFWDIWHQLGSPP EKPPY+VVKRALGYVIREYAPRMATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEY+VTGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVP+PTAMGL+PTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILM+NSVACFTKAGKLAMSILYHRPK+IGIGNEVFVELDPE+ VTEEVVEGKVGGGTW
Sbjct:   91 VVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRMATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYYVTGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPVPTAMGLDPTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILMYNSVACFTKAGKLAMSILYHRPKYIGIGNEVFVELDPEEAVTEEVVEGKVGGGTW 373
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BLAST of mRNA_E_fasciculatus_S2_contig9657.17667.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A9_9PHAE)

HSP 1 Score: 565 bits (1457), Expect = 8.780e-195
Identity = 271/283 (95.76%), Postives = 280/283 (98.94%), Query Frame = 3 
Query:    3 VVKITDSWEGNPVTLGLKHLVPGFWDIWHQLGSPPVEKPPYKVVKRALGYVIREYAPRMATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYFVTGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPMPTAMGLEPTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILMHNSVACFTKAGKLAMSILYHRPKFIGIGNEVFVELDPEDGVTEEVVEGKVGGGTW 851
            VVKITD+WEGNPVTLGLKHLVPGFWDIWHQLGSPP EKPPY+VVKRALGYVIREYAPR+ATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEY+VTGPLEVAIQPFIATGNFPNGTWFNGT REASQSRRANRITWTVP+PTAMGL+PTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEP+KGADGRVRSGILMHNSVACFTKAGKLAMSILYHRPK+IGIGNEVFVELDPE+ VTEEVVEGKVGGGTW
Sbjct:  264 VVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRLATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYYVTGPLEVAIQPFIATGNFPNGTWFNGTRREASQSRRANRITWTVPIPTAMGLDPTKLPEPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPSKGADGRVRSGILMHNSVACFTKAGKLAMSILYHRPKYIGIGNEVFVELDPEEAVTEEVVEGKVGGGTW 546
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BLAST of mRNA_E_fasciculatus_S2_contig9657.17667.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS2_9STRA)

HSP 1 Score: 216 bits (551), Expect = 3.620e-61
Identity = 110/270 (40.74%), Postives = 165/270 (61.11%), Query Frame = 3 
Query:    3 VVKITDSWEGNPVTLGLKHLVPGFWDIWHQLGSPPVEKPPYKVVKRALGYVIREYAPRMATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYFVTGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPMPTAMGLEPTKLPEPPSERERGEDQRSRH------VRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILMHNSVACFTKAGKLAMSILYHRPKFIGIGNEVFVELD 794
            ++ + D+WE  PV   ++HL+PGFWDIW+Q  SP  E+ P+KV++R  GY + ++APR+  +P+L+D +NSR+ R A +LP F     + T GR P++YF T P+E  I P I T    N    NG+    S   RANRITW V +P + GLE   +P+P     RGE     +       RQ  R +AV N+NG  QD EA E+RAKLL++L+ D  + A G +GR ++G +  +    F K G++++++  +RPK +G GN+V+VEL+
Sbjct:  132 IISMEDTWEEAPVQALIRHLLPGFWDIWNQFCSPIAERYPHKVLRRGRGYEVWQFAPRLVLRPTLVDRTNSRQARMAYVLPDFSFTSSVNTRGRVPEKYFTTSPIEAEITPLIETNTVSNE---NGSL--GSVQTRANRITWAVQVPASFGLEAGAMPDP-----RGEGYNPLNGDAIEFERQDRRVVAVANYNGSVQDKEAVELRAKLLEQLSMDKAKVALGPEGRPKAGFMSFDGKVGFNKQGRVSIAVYEYRPKILGKGNKVYVELE 391
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BLAST of mRNA_E_fasciculatus_S2_contig9657.17667.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SS52_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.260e-19
Identity = 79/280 (28.21%), Postives = 128/280 (45.71%), Query Frame = 3 
Query:    3 VVKITDSWEGNPVTLGLKHLVPGFWDIWHQLGSPPVEKPPYKVV---KRALGYVIREYAP-RMATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYFV--TGPLEVAIQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPMPTAMGLEPTKLPEPPSERERG---------EDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLAADGVEPAKGADGRVRSGILMH-NSVACFTKAGKLAMSILYHRPKFIGI-GNEVFVEL 791
            V ++ D W+ +P  +GL+ + P FWD++    +P  E P  +V+   K ++G      +P R+    SL D SNSR+ R A  LP F    +     R P +     T PL V+I+        P                R  R+TW +P+PTA+GL+   LPE P + E           E+    +  Q A+     +++G PQD  AA +R  L +   A G+    GA+G     +L    +   ++  G LA ++  + P ++ + GNE+ VE+
Sbjct:  173 VTRVIDRWDSSPTDIGLQQVAPKFWDVFDLWATPVAETPCEEVLNEFKFSMGQARLVRSPERLCLVCSLDDVSNSRKQRVASALPDFVFLADT----RSPTDVIAATTTPLSVSIEALPRVDGEP----------------RKRRVTWALPLPTALGLDFASLPELPRKAELNDGGLELGVAENPSLTYALQPAKLYVCASYSGDPQDAAAAPLRKALAEAAVAQGLSLVPGANGGAAPAVLRKWRAKLGYSDVGALAYAMESNAPSWVSVDGNELCVEV 432
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9657.17667.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized2.300e-19896.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.780e-19595.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.620e-6140.74protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.260e-1928.21protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9657contigE_fasciculatus_S2_contig9657:1347..4617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score446.4
Seed ortholog evalue7.8e-123
Seed eggNOG ortholog2880.D7FR29
Model size1724
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2C5V8@1,2SB4P@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_003730.1
Cds size678
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9657.17667.1prot_E_fasciculatus_S2_contig9657.17667.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9657 1523..3747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842611.4503453-UTR-E_fasciculatus_S2_contig9657:1346..15221696842611.4503453-UTR-E_fasciculatus_S2_contig9657:1346..1522Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9657 1347..1522 +
1696842611.5201807-UTR-E_fasciculatus_S2_contig9657:3747..46171696842611.5201807-UTR-E_fasciculatus_S2_contig9657:3747..4617Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9657 3748..4617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842611.4646282-CDS-E_fasciculatus_S2_contig9657:1522..15671696842611.4646282-CDS-E_fasciculatus_S2_contig9657:1522..1567Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9657 1523..1567 +
1696842611.486041-CDS-E_fasciculatus_S2_contig9657:2077..22441696842611.486041-CDS-E_fasciculatus_S2_contig9657:2077..2244Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9657 2078..2244 +
1696842611.4973037-CDS-E_fasciculatus_S2_contig9657:2643..28331696842611.4973037-CDS-E_fasciculatus_S2_contig9657:2643..2833Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9657 2644..2833 +
1696842611.5081575-CDS-E_fasciculatus_S2_contig9657:3471..37471696842611.5081575-CDS-E_fasciculatus_S2_contig9657:3471..3747Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9657 3472..3747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9657.17667.1

>prot_E_fasciculatus_S2_contig9657.17667.1 ID=prot_E_fasciculatus_S2_contig9657.17667.1|Name=mRNA_E_fasciculatus_S2_contig9657.17667.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=226bp
MATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYFVTGPLEVA
IQPFIATGNFPNGTWFNGTTREASQSRRANRITWTVPMPTAMGLEPTKLP
EPPSERERGEDQRSRHVRQGARRIAVTNFNGIPQDPEAAEVRAKLLKRLA
ADGVEPAKGADGRVRSGILMHNSVACFTKAGKLAMSILYHRPKFIGIGNE
VFVELDPEDGVTEEVVEGKVGGGTW*
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mRNA from alignment at E_fasciculatus_S2_contig9657:1347..4617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9657.17667.1 ID=mRNA_E_fasciculatus_S2_contig9657.17667.1|Name=mRNA_E_fasciculatus_S2_contig9657.17667.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3271bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9657:1347..4617+ (Ectocarpus fasciculatus EfasUO2)
AGGTGGTAAAGATCACCGACAGCTGGGAGGGAAACCCCGTGACCCTGGGC
CTGAAGCACCTCGTGCCTGGCTTCTGGGACATCTGGCACCAGCTGGGATC
CCCCCCCGTGGAGAAACCGCCTTACAAGGTGGTGAAGCGGGCGCTGGGGT
ACGTGATCAGGGAGTACGCGCCGCGCATGGCGACGCAGCCGTCGCTCATC
GACTACTCCAACTCACGAGAGGTGGGGGGGAAGAAGGAAGGCATGGCTTT
TTCTGCGGAAAGCAGCAGTATGATATAGACCGGGGTGTGTGTGTGCTTGT
GTAAACGCATGCCGCAGTCGTTAGGACGTTGACCTCGCATTCCTGCGATG
CCAAGACGGGAAATATGTTGGGTTTTCGCCGGCCCAGGCTATGTATAGAG
GGGGCGCGGGCGTAGGGGACTCAGGACTCATGCTTTGGCATGCCTTCGTT
GTTCGACCTTGACCACGCGTCCTCGAGAGGACGTAGCATGCGGACGGGGG
AGGGGAGAGGGGGGCATGGGTTGGGGAGCCAAATCAGATGTTGAGGGTTA
GTTCGAGGAGGGAGGGTTGTTTGTCAACCGCGGGAAAACAGTACCCCTTG
CACGCTTGCCTTTGCTTGTCGGCGGCTCCTGATTGCTACAGCAGCCTATC
TTGTATTTTGATTTCCGGAACGCTCCTCGGAACGTCCCCATATTTGCCCC
TGGATTCGCCCCTCCTCTATACTGTATACAGATCCGGAAGGCGCTGATCT
TGCCCGGCTTCTGCCATGACGGAGAGATCAAGACGTCTGGCCGGAAGCCG
GACGAGTACTTCGTCACGGGCCCCCTGGAGGTGGCAATCCAGCCCTTCAT
CGCGACGGGAAACTTCCCGAACGGCACCTGGTTCAACGGGACGACAAGGT
ACATATTACAAGTGCTTGCTGTGTGCGTGTGACTTCGTGCATTTTGATCG
ATTGTTATCGTCTTCACATTAAGAACCGTTCCAGCCTCCGCTCAGTACCG
CGTAATATCCGTGGTGGTCCAACTGATGAGGACACCTTCCGTGGTCACAA
GCCAACTGCTGTAGCCAAAGTGGCTAACTGCTAAGGAAAGAGCATCATAT
TTACCCCCCCACTTTAATAGGAAGGAACGATGGCCATCGGAGATGATCGG
TCCCGTGGGAACAAAATGTCCGTCCTTCCGAGAACGCGTGTGGTCAATGG
CCCAACCGCTAAGGCAATTAAAACGTAAGATTACGCCCCCCCCCTTCCCC
CCATGAAGTAAACGCCTTCCGTTACAATGTTTTTGCAAAACCTCCAGGGA
GGCGTCGCAGAGCCGTCGGGCAAACCGCATCACATGGACGGTGCCGATGC
CGACCGCGATGGGCTTGGAACCCACCAAGCTCCCGGAGCCTCCTTCGGAG
CGCGAGAGGGGGGAGGACCAGAGGTCGAGACACGTCCGACAGGGGGCCCG
CAGAATCGCTGTGACCAATTTTAACGGCATTCCGCAGGTGTGTTGTTGTT
GGTGGTGGTGGCGGTGGTGATGATGATGTTCATGCTGTTGCTACAATATA
TGTTTTGATATTTTGCCGTTCCACCCCCCCCCGTTGATGCTGTTGCTGTT
GTTATATGTCTGATAGTGCCGTCCCCCCCCAGTTATTTTACACTCTTTGC
AAATCAAGCCTTAAAACATAGCGCGCAGGTCAGGCGCAAGAGAGGGAAGA
TCAGGAGGGGGTGGGGATGTTTACAGATCCAGGATTGTGGTTGAGGGTTG
ACAGGTCCAGGAAGCAATCATGTGCTGGCGCCGAAAAACCCCTTGTGATT
TCGTGTGCTACAGCGGTAGTGCTTAGTTTGCGAAGGATTTTTTACGGACA
GCGGTATTTTTTGTTGTATCTCAAGCTCAGCAGTTTGTGCTGAAGTTTTC
ATTCTTGATGGGCCGGGGTGAATGGTTACAAAGAATTTTTCAACACAACC
CCACAACGCGAACAAACTCCAACCACGCCAGCAGCAGCAGTCCGTAGAAG
CAGGGAATGGCCGACCAACCATTGGGCACGGGTTTTTGGACGGGCGACTT
CGCGCGTAGTACATGTGTAACCGTTAAATCCTAGCCCTATCGACAAAAAC
AACATTAACACGAACAAACCAACAGGACCCCGAGGCGGCGGAAGTGAGGG
CGAAGCTCCTCAAGAGGTTAGCGGCGGACGGGGTGGAGCCCGCGAAGGGG
GCCGACGGGCGAGTGCGAAGCGGGATCTTGATGCACAACTCGGTGGCGTG
CTTCACCAAGGCGGGGAAGCTGGCGATGAGCATCTTGTATCACCGGCCCA
AGTTCATCGGGATAGGGAACGAGGTCTTCGTGGAGTTGGACCCGGAAGAT
GGAGTCACCGAGGAGGTGGTGGAGGGGAAAGTTGGAGGGGGCACGTGGTG
ACGACGACTACCGCCCAGTAGCCTTGGCGAAGTTTGTTGAGCTTGGATTT
TAGTGGGTTGGGGGATAAGGGGTTAGGGATACGAAAACCCCCGATCTATT
TCGGAGATGGTTCGGGATAAGAACCACCCCTCTCTTTTCGGAGATTTAGG
GGATAGGGATACGAACACCCCGATCTATTTCGGAGATGGTTCGGGATACG
AAAACCCCCGATCTATTTGGGAGACTAAAGAAGAATTAGACTCCCCCCCA
CACACAAGAGGGGAGAGAGAGCCTAGCGTGTGGAGGGCTGACGACATGCC
CAAACCAGGGACTCTGACTCGGCGTGTAGCAACGAACGGAGTGGGCGACG
TAAGCCTGCAAACGAGGAAAGAGTGCGATGGAAGCATTGAAGCCAAGAAC
AGTTTGGGGGGAGATCCGCCAGGGGGGGTGGTGGGTAGTACTAGGTACAG
CACACAGGTTCGGGAATTTGCCGCTGAAAGAGATTTATTTTCTTGACACG
ATAGTAGAGCATCTACAATTCTAGTAGGTCAAGCGGAATTTTTAGAGGTC
TTTCTGCGATAGAACCACCATTTACTATATAGTTCGTACAACCCACCTGG
GTCGAGAGCGGTGGCATCGCCATGGATGTATGTATCTCGATCTCTTCTGT
GGCATCTGTTTGCGCACGGCGCGCTGCATAACGTACCTTATCATTCCACA
GCAGTGCTTGACACTTCCCGAAGGGGGTGGACGGGGGCGGTGCTGCCGCT
ACTCCAAGGCTCGATTTGTCGGAAGTCGAAACAGAAAAGCTGTGGCACCA
CATAGCACCTCCCGCACGCGGCGTCGGAACTATGAGTTATCCCATCTGTT
TTGTTTTTTTTTCACCGTAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9657:1347..4617+

>mRNA_E_fasciculatus_S2_contig9657.17667.1 ID=mRNA_E_fasciculatus_S2_contig9657.17667.1|Name=mRNA_E_fasciculatus_S2_contig9657.17667.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9657:1347..4617+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGACGCAGCCGTCGCTCATCGACTACTCCAACTCACGAGAGATCCG
GAAGGCGCTGATCTTGCCCGGCTTCTGCCATGACGGAGAGATCAAGACGT
CTGGCCGGAAGCCGGACGAGTACTTCGTCACGGGCCCCCTGGAGGTGGCA
ATCCAGCCCTTCATCGCGACGGGAAACTTCCCGAACGGCACCTGGTTCAA
CGGGACGACAAGGGAGGCGTCGCAGAGCCGTCGGGCAAACCGCATCACAT
GGACGGTGCCGATGCCGACCGCGATGGGCTTGGAACCCACCAAGCTCCCG
GAGCCTCCTTCGGAGCGCGAGAGGGGGGAGGACCAGAGGTCGAGACACGT
CCGACAGGGGGCCCGCAGAATCGCTGTGACCAATTTTAACGGCATTCCGC
AGGACCCCGAGGCGGCGGAAGTGAGGGCGAAGCTCCTCAAGAGGTTAGCG
GCGGACGGGGTGGAGCCCGCGAAGGGGGCCGACGGGCGAGTGCGAAGCGG
GATCTTGATGCACAACTCGGTGGCGTGCTTCACCAAGGCGGGGAAGCTGG
CGATGAGCATCTTGTATCACCGGCCCAAGTTCATCGGGATAGGGAACGAG
GTCTTCGTGGAGTTGGACCCGGAAGATGGAGTCACCGAGGAGGTGGTGGA
GGGGAAAGTTGGAGGGGGCACGTGGTGA
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