mRNA_E_fasciculatus_S2_contig9654.17664.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9654.17664.1
Unique NamemRNA_E_fasciculatus_S2_contig9654.17664.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: Zinc (finger, FYVE domain containing 28 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR5_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 2.630e-71
Identity = 162/241 (67.22%), Postives = 168/241 (69.71%), Query Frame = 1 
Query:   10 FCQLKERREAKKLLEKGFLSDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAEEGRPGGNSTAGTXXXXXXXXXXXXXXXXXXXXXXXXXSRHARVCTDCHFSLQTVTVASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----VASARGLVRDDDRRGDVGSXXXXXGP---VDRVEEA-CSMEGIAGDVVLEDVLEWGRIE 708
            FCQLKERRE KKLLEKGFLSDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAEEGRP  ++TAGT     XXXXXXXXXX          SRHARV  D HFS Q VTVASS                               XXXXXXXXXX    V SARGLVRD+ R      XXXXX     V+RVEEA CSMEG+ GDVVLEDVLEWGRI+
Sbjct:    2 FCQLKERREGKKLLEKGFLSDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAEEGRPE-STTAGTAAAGEXXXXXXXXXXPSSRRRHHRRSRHARVGPDVHFSWQIVTVASSATLQQQTYGSGVENDDDVESLLRRMGDGGVGXXXXXXXXXXXXXXVVSARGLVRDNRRXXXXXXXXXXXXXXXSVERVEEAACSMEGVPGDVVLEDVLEWGRIQ 241
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 4.940e-63
Identity = 180/239 (75.31%), Postives = 189/239 (79.08%), Query Frame = 1 
Query:   19 LKERREAKKLLEKGFLSDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAEEGRPGGNSTAG----TXXXXXXXXXXXXXXXXXXXXXXXXXSRHARVCTDCHFSLQTVTVASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASARGLVRDDDRRGDVGSXXXXXGP----VDRVEE-ACSMEGIAGDVVLEDVLEWGRIE 708
            LKERRE KKLLEKGFLSDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCG CSPHRVRLA+EGRP G +  G     XXXXXXXXXXXXX            +   RVCTDCHFSLQTVTVAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       V SARG VR++ R GD G+     G     V+RVEE ACSMEG+AGDVVLEDVLEWGRI+
Sbjct:  809 LKERREGKKLLEKGFLSDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGPCSPHRVRLADEGRPEGTTGDGGXXXXXXXXXXXXXXXXXHARMAHGNGGPRAVAVRVCTDCHFSLQTVTVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------VVSARGWVRENGR-GDAGAAASGAGDGGGSVERVEEEACSMEGMAGDVVLEDVLEWGRIQ 1039
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: FYVE (zinc finger-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8R8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.730e-14
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  106 WIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAE 243
            W+PN+    C  CER FT++ RRHHCRMCGELVC  CSPHR RL +
Sbjct:    4 WMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARLGD 49
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA03_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 3.620e-12
Identity = 35/97 (36.08%), Postives = 47/97 (48.45%), Query Frame = 1 
Query:  124 RNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAEEGRPGGNSTAGTXXXXXXXXXXXXXXXXXXXXXXXXXSRHARVCTDCHFSLQTVTVA 414
            R  C+HC + FT++ R+HHCRMCGELVCG CSPHR+++  +                                    +R  R+CTDC  SL+ V VA
Sbjct:   16 RECCVHCSKEFTVLFRKHHCRMCGELVCGPCSPHRIKMEID----------------------LADDQANIFEKMVKNRVQRICTDCFISLKHVKVA 90
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CG25_SAPPC)

HSP 1 Score: 70.5 bits (171), Expect = 2.170e-11
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   31 REAKKLLEKGFL-SDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCS 219
            R  + LL+  +L SD+    A     W+P++AR  C+HC RPF+L  RRHHCR+CG+++CG CS
Sbjct:    3 RHRRTLLDDNYLVSDVRVQLACPKEAWVPDAARQRCIHCSRPFSLFRRRHHCRVCGDVLCGACS 66
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: FYVE-type (domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BXT6_SAPPC)

HSP 1 Score: 69.3 bits (168), Expect = 2.360e-11
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   31 REAKKLLEKGFL-SDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCS 219
            R  + L++  +L SD+    A     W+P++AR  C+HC RPF+L  RRHHCR+CG+++CG CS
Sbjct:    3 RHRRTLVDDNYLVSDVRVQLACPKEAWVPDAARQRCIHCSRPFSLFRRRHHCRVCGDVLCGACS 66
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QWE5_SAPDV)

HSP 1 Score: 69.3 bits (168), Expect = 6.620e-11
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   31 REAKKLLEKGFL-SDLPGLSAGDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCS 219
            R  + L++  +L SD+    A     W+P++AR  C+HC RPF+L  RRHHCR+CG+++CG CS
Sbjct:    3 RHRRTLVDDNYLVSDVRVQRACPKETWVPDAARQRCIHCTRPFSLFRRRHHCRVCGDVLCGACS 66
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: FYVE-type (domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRY4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.080e-10
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   91 GDCAEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAEEGRPG 258
            G   +W P++A +SCL C   F++ +RRHHCR CGELVCG CSP  VRL E G  G
Sbjct:   22 GSPPQWRPDAASDSCLCCGNDFSIWMRRHHCRACGELVCGECSPFSVRLPELGFKG 77
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: Aste57867_20655 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LFE8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.220e-9
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  100 AEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRL 237
            A WIP+S   SC  C RPFT+  RRHHCR CG +VCG CS HR  L
Sbjct:  396 ALWIPDSVAGSCSRCRRPFTVTFRRHHCRRCGNVVCGSCSEHRSIL 441
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BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Match: FYVE-type (domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR44_AMPQE)

HSP 1 Score: 67.8 bits (164), Expect = 1.350e-9
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  100 AEWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAE 243
            A W+P+S  N C+ C++ F+  +R+HHCRMCG +VC  CSPH+  +A+
Sbjct:    5 AVWVPDSVTNQCMLCKQKFSAFVRKHHCRMCGRIVCSQCSPHKADIAQ 52
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9654.17664.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Zinc2.630e-7167.22finger, FYVE domain containing 28 n=1 Tax=Ectocarp... [more]
Uncharacterized4.940e-6375.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
FYVE8.730e-1463.04zinc finger-domain-containing protein (Fragment) n... [more]
Hypothetical3.620e-1236.08protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Uncharacterized2.170e-1146.88protein n=1 Tax=Saprolegnia parasitica (strain CBS... [more]
FYVE-type2.360e-1145.31domain-containing protein n=1 Tax=Saprolegnia para... [more]
Uncharacterized6.620e-1145.31protein n=1 Tax=Saprolegnia diclina (strain VS20) ... [more]
FYVE-type1.080e-1055.36domain-containing protein n=1 Tax=Peronospora effu... [more]
Aste57867_206551.220e-960.87protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
FYVE-type1.350e-947.92domain-containing protein n=1 Tax=Amphimedon queen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9654contigE_fasciculatus_S2_contig9654:213..2208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score233.4
Seed ortholog evalue1.1e-58
Seed eggNOG ortholog2880.D8LMR5
Model size708
KEGG koko:K04679
KEGG Pathwayko04144,ko04350,map04144,map04350
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
Exons3
EggNOG free text desc.1-phosphatidylinositol binding
EggNOG OGsKOG1841@1,KOG1841@2759
Cds size708
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842611.329225-CDS-E_fasciculatus_S2_contig9654:212..5521696842611.329225-CDS-E_fasciculatus_S2_contig9654:212..552Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9654 213..552 -
1696842611.3415227-CDS-E_fasciculatus_S2_contig9654:1509..17281696842611.3415227-CDS-E_fasciculatus_S2_contig9654:1509..1728Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9654 1510..1728 -
1696842611.356443-CDS-E_fasciculatus_S2_contig9654:2059..22081696842611.356443-CDS-E_fasciculatus_S2_contig9654:2059..2208Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9654 2060..2208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9654.17664.1prot_E_fasciculatus_S2_contig9654.17664.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9654 213..2208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9654.17664.1

>prot_E_fasciculatus_S2_contig9654.17664.1 ID=prot_E_fasciculatus_S2_contig9654.17664.1|Name=mRNA_E_fasciculatus_S2_contig9654.17664.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=236bp
MLTFCQLKERREAKKLLEKGFLSDLPGLSAGDCAEWIPNSARNSCLHCER
PFTLILRRHHCRMCGELVCGLCSPHRVRLAEEGRPGGNSTAGTAAAGEDG
GGDDGAHEPASRRRHHRRSRHARVCTDCHFSLQTVTVASSAALQQSGSTG
GGIENDDDDESLLRRMGDAGGGGGGGGGGGGVASARGLVRDDDRRGDVGS
AGDGGGPVDRVEEACSMEGIAGDVVLEDVLEWGRIE
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mRNA from alignment at E_fasciculatus_S2_contig9654:213..2208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9654.17664.1 ID=mRNA_E_fasciculatus_S2_contig9654.17664.1|Name=mRNA_E_fasciculatus_S2_contig9654.17664.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1996bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9654:213..2208- (Ectocarpus fasciculatus EfasUO2)
ATGTTAACGTTTTGCCAGCTGAAAGAGAGGCGAGAAGCGAAGAAGCTCCT
TGAAAAGGGTTTCCTTTCTGACCTTCCGGGCCTCTCGGCGGGAGACTGCG
CCGAGTGGATTCCCAATAGCGCGCGAAACTCGTGCCTCCATTGCGAAAGG
TATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTATTCCGGGGATGCC
TTTGTTGTGTTGTTGTTGCGGCTGTGAGACGTTCGACCGCAGGAGGAGCG
CTTCCGATGAGCCCTGTAGCTACAGGGGTAGCTGCCTTGGTAGCTTTTGG
TGTTTGTTCGTTGGTCGGCCTTCACTGTAGCTATTTTGAGCGGCTGATGT
GTGTATTTATTGGTGTCCTTGTCTGAATCGCCGGCTTCGGTACTGTTTCT
ATCGTCGTCGTAGCCGTTCGTGAGAATCCCGGCCACCAACGCGCGCACAC
CGTCACGGTGCCCCCCCCCCCTCCCCAAAGGCCGTTCACGCTGATTTTGC
GGCGTCACCACTGCCGGATGTGCGGAGAGCTGGTCTGCGGGCTCTGCTCG
CCGCACCGAGTCCGCCTAGCCGAAGAGGGGAGACCCGGGGGCAACAGCAC
CGCCGGTACCGCTGCCGCCGGAGAGGACGGGGGCGGCGACGATGGCGCGC
ACGAGCCGGCATCCCGTCGTCGACACCACCGGCGATCGAGGCATGCGAGG
TTCGTTCTTGTTGTGAAAAGGACCGACTCCTACTGCTTGTGGGGTGGTTT
TGGGGGTGGCGATCACACGCTCACTGGTGGTTTGGGTCGCGGACACACGC
TCGTGGTTCGGGGTCGCGACTACACGCTCACGGCCCATGTTGGAGCGTGA
TCTTTGTTGTGTGCTGTTGCTGTGGTTGTTGTTGGCTGTTGTTCGTGTTG
TGTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGGCTGTTGTTCGTGTTGTATGTTGTTGTTGTTGTTGTTGT
TGTTGTGTGCTGGTGTTGTTGCTGCTGCTGCTGCTCTAGTTGTTGGGTGT
TGGGTGTTGTTCGTGGAACGCGTGGACTTGTCGGTGCGCTCGAGCGAATC
ACGCACCCAGGGTCTGCGCGGGCGGTGGTTGTATAGACTTGAGAGGCTTC
GTGTTCCTTTTCTTCCCATCTCCATGCCCCTGTCCCTGCCGTGTTTGTGT
GTACTGTACCGCGTTACTCGGAAGAGGCTGGTCTATATACGACTATCTAT
TGTATCATCCGCGGCAGACTGCTTGCACGGTCGGGTTTCCTTTCCGTAAA
CGTACCGCCCGATGAGTTTACCGGTGATGGTGAAAAAACGTTGATGATGA
CGACGGCAGCCTACCATATCTCCGTGTCGCTCGCCGTTTCAAGGTCGCCG
GCGTTTTGACCTTGTCAATCCCCCCCGATTCGCGCTTTTGTGATCTGAGA
GCCTGGTCCGCTGAGAACCCGGCGTGTTCTGTCCCGGCTTTGTAGGGATG
CGAGGTCAATGGTCTAACGACTACGGCACGCACGACTGTGAGTACACCCC
CCCCCCCCCTCTTCATACCGTCTTCCTGATCCTCCTTCCCCTGCCCCTAC
CCTGCCCCCACCAGGCATGCGAACGGCAACGGCGCCCCGAGGGCAGTCGC
CGTCAGGGTGTGCACCGACTGTCACTTTTCCCTGCAGACTGTTACCGTGG
CGTCCTCCGCGGCCCTCCAACAATCCGGCAGCACTGGCGGCGGCATCGAG
AACGACGACGATGACGAGAGTTTGCTGCGTCGAATGGGTGACGCAGGCGG
AGGCGGCGGCGGCGGCGGCGGCGGGGGGGGGGTTGCGAGTGCGAGGGGCT
TGGTGCGGGACGACGACCGCCGAGGTGATGTTGGCAGCGCCGGCGACGGT
GGGGGTCCCGTGGACAGAGTGGAGGAGGCGTGCTCGATGGAGGGTATAGC
GGGAGACGTGGTTCTTGAGGACGTTTTGGAGTGGGGCCGAATAGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9654:213..2208-

>mRNA_E_fasciculatus_S2_contig9654.17664.1 ID=mRNA_E_fasciculatus_S2_contig9654.17664.1|Name=mRNA_E_fasciculatus_S2_contig9654.17664.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=708bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9654:213..2208- (Ectocarpus fasciculatus EfasUO2)
ATGTTAACGTTTTGCCAGCTGAAAGAGAGGCGAGAAGCGAAGAAGCTCCT
TGAAAAGGGTTTCCTTTCTGACCTTCCGGGCCTCTCGGCGGGAGACTGCG
CCGAGTGGATTCCCAATAGCGCGCGAAACTCGTGCCTCCATTGCGAAAGG
CCGTTCACGCTGATTTTGCGGCGTCACCACTGCCGGATGTGCGGAGAGCT
GGTCTGCGGGCTCTGCTCGCCGCACCGAGTCCGCCTAGCCGAAGAGGGGA
GACCCGGGGGCAACAGCACCGCCGGTACCGCTGCCGCCGGAGAGGACGGG
GGCGGCGACGATGGCGCGCACGAGCCGGCATCCCGTCGTCGACACCACCG
GCGATCGAGGCATGCGAGGGTGTGCACCGACTGTCACTTTTCCCTGCAGA
CTGTTACCGTGGCGTCCTCCGCGGCCCTCCAACAATCCGGCAGCACTGGC
GGCGGCATCGAGAACGACGACGATGACGAGAGTTTGCTGCGTCGAATGGG
TGACGCAGGCGGAGGCGGCGGCGGCGGCGGCGGCGGGGGGGGGGTTGCGA
GTGCGAGGGGCTTGGTGCGGGACGACGACCGCCGAGGTGATGTTGGCAGC
GCCGGCGACGGTGGGGGTCCCGTGGACAGAGTGGAGGAGGCGTGCTCGAT
GGAGGGTATAGCGGGAGACGTGGTTCTTGAGGACGTTTTGGAGTGGGGCC
GAATAGAG
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