mRNA_E_fasciculatus_S2_contig9650.17663.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9650.17663.1
Unique NamemRNA_E_fasciculatus_S2_contig9650.17663.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT3_ECTSI)

HSP 1 Score: 554 bits (1428), Expect = 3.950e-196
Identity = 333/347 (95.97%), Postives = 339/347 (97.69%), Query Frame = 1
Query:    1 AGRATLARSNPLGRAGSGSSASQQFRRTHRTAQRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEPGCSMEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTKVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDAWKQVRQTY 1041
            AGRATLARSNPL R GSGSSASQQFRRTHRTAQRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GGEPGCSM+ELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVG+DSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEAD AANK+KRKAAKQGTLKAVSL+DLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTN+KNVQQSAR KVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDAWKQ  Q +
Sbjct:   33 AGRATLARSNPLARTGSGSSASQQFRRTHRTAQRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GGEPGCSMDELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGVDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEADTAANKIKRKAAKQGTLKAVSLQDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNFKNVQQSARAKVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDAWKQHHQDW 378          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2HYH8_HEMAN)

HSP 1 Score: 411 bits (1056), Expect = 4.290e-137
Identity = 201/263 (76.43%), Postives = 232/263 (88.21%), Query Frame = 1
Query:  247 SMEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSART-------KVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGD 1014
            SME++VG+CKRRGFVF SSEIYNGFAGF+DYGPLGVELK NIK  WWRD+V  RDD+VGLDSSII++P++W++SGHV GFSDPMVDCKESK+RYRADQLFYGKVELEDGEV+GYVSV+ESGTMQEEAD  AN MKRKA KQGTLK V+L +++    +ELE VPSPATG PG+LTPPR FNLMFQT VGAM+DASS AY+RPETAQGIF N+KNVQQ+ART       ++GKAFRNEITPRNFIFRSREFEQME+EYF+++ D
Sbjct:   98 SMEDIVGVCKRRGFVFQSSEIYNGFAGFYDYGPLGVELKANIKRVWWRDMVHRRDDMVGLDSSIIASPQIWQSSGHVDGFSDPMVDCKESKMRYRADQLFYGKVELEDGEVLGYVSVMESGTMQEEADKTANTMKRKAQKQGTLKPVTLAEVAECPLDELENVPSPATGKPGSLTPPRAFNLMFQTQVGAMSDASSTAYLRPETAQGIFVNFKNVQQTARTTLPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIDDAD 360          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ7_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 9.330e-135
Identity = 203/273 (74.36%), Postives = 233/273 (85.35%), Query Frame = 1
Query:  250 MEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVEL-EDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFV-EEGDAWKQVRQTY 1041
            MEELV LCKRRGFVF SSEIYNGFAGFFDYGPLGVE+KKNIKD WWRDVV+ RDDIVGLDSSII +PK+WEASGHVAGFSDPMVDC+ESKLRYRADQ+F+ +V L E GEV+G VSV+ESGTM+ EA AAA+KMKRKAAKQG L  + LKDL++ +AE+L ++PSPATG PG LT PR+FNLMFQT VGA  D S+ AY+RPETAQGIFTN+KNVQQ+AR K+       GKAFRNEITPRNFIFRSREFEQMEVEYF+ ++ DAW+   Q +
Sbjct:    1 MEELVALCKRRGFVFQSSEIYNGFAGFFDYGPLGVEIKKNIKDLWWRDVVRRRDDIVGLDSSIIGSPKIWEASGHVAGFSDPMVDCRESKLRYRADQVFWARVALAETGEVLGAVSVMESGTMEAEAQAAADKMKRKAAKQGALAPLDLKDLTQATAEDLSIIPSPATGNPGTLTAPRDFNLMFQTAVGATVDGSNAAYLRPETAQGIFTNFKNVQQTARAKIPFGIAQIGKAFRNEITPRNFIFRSREFEQMEVEYFISDDDDAWRGEHQAW 273          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N9R4_9STRA)

HSP 1 Score: 385 bits (989), Expect = 2.770e-128
Identity = 190/268 (70.90%), Postives = 228/268 (85.07%), Query Frame = 1
Query:  250 MEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELE-DGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTK-------VGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGD-AWKQ 1026
            M+E+V LCKRRG +F SSEIYNGF GF+D+GPLGVEL+ NIK AWW+D+V  R+DIVGLDSSII++P +W+ASGHV GFSDPMVDCKESK RYRADQLF+ KVE+E DGEV+GY+S+LESG MQ++A+  A KMK+KA KQGTLK + LK+++  + EEL L+PSPATGTPGALT PREFNLMFQT VGA+ADAS+VAY+RPETAQGIFTN+KNV  +AR K       +GKAFRNEITPRNFIFRSREFEQME+EYF+  GD  W++
Sbjct:    1 MDEIVALCKRRGIIFQSSEIYNGFQGFYDFGPLGVELRNNIKQAWWKDMVHGREDIVGLDSSIIASPAIWKASGHVDGFSDPMVDCKESKNRYRADQLFFAKVEVEEDGEVLGYLSLLESGDMQDQAEKQAKKMKKKAEKQGTLKPIELKEVAEATEEELALIPSPATGTPGALTAPREFNLMFQTQVGALADASAVAYLRPETAQGIFTNFKNVVNTARIKLPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIPPGDDQWQE 268          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDS6_9STRA)

HSP 1 Score: 385 bits (988), Expect = 1.640e-127
Identity = 196/267 (73.41%), Postives = 222/267 (83.15%), Query Frame = 1
Query:  250 MEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKA-VSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTK-------VGKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWK 1023
            ME++V LCKRRGFVF SSEIYNGF GF+DYGPLGVELKKNIK+AWWR VV ARDD+VG+DSSII +PKVWEASGHVAGFSDPMVDCKESK+RYRADQLF+GKVE +DGE +GYVSV+E   MQ EA+  A KM RK+A+ G LK  + LKDL+  + EE+ELVPSPATG PG+LTPPR FNLMFQT VGAM+DASS AY+RPETAQGIF N+K  Q  AR K       +GKAFRNEITPRNFIFRSREFEQMEVEYF+  E D W+
Sbjct:   37 MEDVVSLCKRRGFVFQSSEIYNGFNGFYDYGPLGVELKKNIKEAWWRAVVYARDDVVGIDSSIIMSPKVWEASGHVAGFSDPMVDCKESKMRYRADQLFFGKVETQDGETLGYVSVMEDAAMQAEAEKKAEKM-RKSAQAGALKLPIELKDLTEATPEEIELVPSPATGKPGSLTPPRAFNLMFQTQVGAMSDASSTAYLRPETAQGIFVNFKTTQNVARGKLPFGIAQIGKAFRNEITPRNFIFRSREFEQMEVEYFIPPEDDIWR 302          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Opitutales bacterium TMED158 TaxID=1986794 RepID=A0A1Z9IHR3_9BACT)

HSP 1 Score: 372 bits (954), Expect = 6.670e-123
Identity = 182/271 (67.16%), Postives = 215/271 (79.34%), Query Frame = 1
Query:  250 MEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDAWKQVRQTY 1041
            M+ +V LCKRRGF+F SSEIY G+ GFFDYGPLG ELKKNIKDAWW+D+VQ RDDI GLDSSII +PK+W ASGHV GFSDPMVDCK SK+RYRADQLFY  V + DG +IGYVSVLE G+MQ EA+ AANKMKRK  +QG L  + LKD +     E EL+PSPATG PG+LTPPREFNLMF+T VGA++D+S+ AY+RPETAQGIF NYKNV  + R K+       GKAFRNEITP+NFIFRSREFEQME+EYF+     W+ + + +
Sbjct:   12 MDAIVALCKRRGFIFQSSEIYGGYNGFFDYGPLGSELKKNIKDAWWKDMVQRRDDIEGLDSSIIMSPKIWVASGHVGGFSDPMVDCKVSKMRYRADQLFYAPVTV-DGSIIGYVSVLEDGSMQTEAETAANKMKRKGGRQGELGPIELKDYTEADPSEYELIPSPATGEPGSLTPPREFNLMFETKVGALSDSSATAYLRPETAQGIFANYKNVVDTGRVKIPFGIAQIGKAFRNEITPKNFIFRSREFEQMEIEYFIAPDADWEAIHREW 281          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Verrucomicrobia bacterium CG1_02_43_26 TaxID=1805421 RepID=A0A1J4XFE5_9BACT)

HSP 1 Score: 372 bits (954), Expect = 6.880e-123
Identity = 185/273 (67.77%), Postives = 224/273 (82.05%), Query Frame = 1
Query:  247 SMEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWKQVRQTY 1041
            +M+ +V LCKRRGF+F SSEIY G  GFFDYGP+G E+++NIK+AWW+D++Q RDD+VGLDSSII +  VW+ASGH+ GFSDPMVDCKESKLRYRADQLF+  V ++D +VIGYVSVLESGTMQEEAD AA  +KRK AKQG+LKAV+LK  +    EE ELVPSPATG PG+LT PR+FNLMF+T+VGAM D SS+AY+RPETAQGIF N+KNV  + R KV       GKAFRNEITPRN+IFRSREFEQME+EYF+  + DAW++  Q +
Sbjct:   10 TMDNIVALCKRRGFIFHSSEIYGGINGFFDYGPMGSEMRRNIKNAWWQDMIQERDDMVGLDSSIIMHSNVWKASGHIEGFSDPMVDCKESKLRYRADQLFFAPVSVDD-DVIGYVSVLESGTMQEEADKAAEALKRKLAKQGSLKAVALKPFTEAKPEEYELVPSPATGKPGSLTAPRDFNLMFETSVGAMRDESSIAYLRPETAQGIFANFKNVVDTTRVKVPFGIAQIGKAFRNEITPRNYIFRSREFEQMEIEYFIPPQDDAWEKFHQEW 281          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM99_9STRA)

HSP 1 Score: 371 bits (952), Expect = 1.450e-121
Identity = 184/268 (68.66%), Postives = 225/268 (83.96%), Query Frame = 1
Query:  247 SMEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVEL-EDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLK-AVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAW 1020
            +ME++V +CKRRGFVF SSEIYNGF GF+DYGPLGVELK NIK  WWRD+V +RDD+VGLDSSII++P+VWEASGHVAGF DPMVDC+ SKLRYRADQL++ KVEL EDGEVIGY+++L+SG +  EA   A K+K+KA K+GT+K  + +KD+++ +  E+ L+PSPATG PG+LTPPR FNLMFQT+VGA+ADASS A++RPETAQGIFTN+KNVQ + R KV       GKAFRNEITPRNFIFRSREFEQME+EYF+  E + W
Sbjct:   86 NMEDIVNVCKRRGFVFQSSEIYNGFNGFYDYGPLGVELKNNIKQRWWRDMVHSRDDMVGLDSSIIASPRVWEASGHVAGFVDPMVDCRVSKLRYRADQLYFTKVELQEDGEVIGYIALLDSGDLHGEARKLAEKLKKKAGKEGTIKFPLDIKDMTKATVAEMALIPSPATGEPGSLTPPRAFNLMFQTSVGALADASSTAFLRPETAQGIFTNFKNVQSTGRVKVPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFIPPEEEVW 353          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Verrucomicrobia bacterium 21-51-4 TaxID=1970609 RepID=A0A257QHU4_9BACT)

HSP 1 Score: 368 bits (945), Expect = 1.890e-121
Identity = 186/273 (68.13%), Postives = 217/273 (79.49%), Query Frame = 1
Query:  247 SMEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVEEGD-AWKQVRQTY 1041
            +M+ LV LCKRRGF+F SSEIY G  GFFDYGPLGVELK NIK AWW+D+V  RDD+VGLD+SII NP VW+ASGHV GF+DPMVDCKESKLRYRADQLF+  V + DGEVIGY+S+LESG M+E+A  AA  MKRKAAKQGTL+AV L+  +    EE   +PSPATG PG+LTPPR FNLMF T+VGA+ DASSVAY+RPETAQGIF N+KNV  S R K+       GKAFRNEITPRNFIFRSREFEQME+EYF+   D  W ++ + +
Sbjct:   16 TMDALVALCKRRGFIFNSSEIYGGIGGFFDYGPLGVELKNNIKAAWWQDMVHGRDDMVGLDASIIMNPAVWKASGHVDGFADPMVDCKESKLRYRADQLFFSPVVV-DGEVIGYISLLESGDMEEQAQKAAELMKRKAAKQGTLEAVKLRPYTEAKPEEYSQIPSPATGKPGSLTPPRSFNLMFSTHVGALEDASSVAYLRPETAQGIFANFKNVTDSTRVKIPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEYFINPDDETWPKLHREW 287          
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Match: Glycine--tRNA (ligase (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P4G7_9EUKA)

HSP 1 Score: 367 bits (943), Expect = 2.610e-121
Identity = 184/273 (67.40%), Postives = 223/273 (81.68%), Query Frame = 1
Query:  247 SMEELVGLCKRRGFVFPSSEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNPKVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVLESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPATGTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQSARTKV-------GKAFRNEITPRNFIFRSREFEQMEVEYFVE-EGDAWKQVRQTY 1041
            +M+E+V LCKRRGF+F SSE+Y GF+GF+DYGPLGVEL++NIK AWWRD V  R+DIVGLDSS+IS+P +W+ASGHV GFSDPMVDCKESKLR+RADQLF+ + E+ DGE++GYVS+LESG M+E+A A A KMKRKA  QG+L    LKD +  + +E  LVPSP TG PGALT PR+FNLMFQTNVGAMADA+SVAY+RPETAQGIFTN++NV  + R KV       GKAFRNEITPRNFIFRSREFEQME+E+F+  + D W Q  + +
Sbjct:   26 AMDEIVSLCKRRGFIFLSSEVYGGFSGFYDYGPLGVELRQNIKAAWWRDFVHRREDIVGLDSSVISSPNIWKASGHVEGFSDPMVDCKESKLRFRADQLFWCRAEV-DGELLGYVSLLESGDMEEKAMAMAQKMKRKAKLQGSLTLSELKDFTEATPDEQALVPSPETGKPGALTAPRDFNLMFQTNVGAMADAASVAYLRPETAQGIFTNFRNVVSTGRVKVPFGIAQIGKAFRNEITPRNFIFRSREFEQMEIEFFIPPDEDVWAQFHEEW 297          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9650.17663.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Glycine--tRNA3.950e-19695.97ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Glycine--tRNA4.290e-13776.43ligase n=2 Tax=Hemiselmis andersenii TaxID=464988 ... [more]
Glycine--tRNA9.330e-13574.36ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
Glycine--tRNA2.770e-12870.90ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
Glycine--tRNA1.640e-12773.41ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=17... [more]
Glycine--tRNA6.670e-12367.16ligase n=1 Tax=Opitutales bacterium TMED158 TaxID=... [more]
Glycine--tRNA6.880e-12367.77ligase n=1 Tax=Verrucomicrobia bacterium CG1_02_43... [more]
Glycine--tRNA1.450e-12168.66ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
Glycine--tRNA1.890e-12168.13ligase n=1 Tax=Verrucomicrobia bacterium 21-51-4 T... [more]
Glycine--tRNA2.610e-12167.40ligase (Fragment) n=1 Tax=Calcidiscus leptoporus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9650contigE_fasciculatus_S2_contig9650:194..5263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score558.9
Seed ortholog evalue1.6e-156
Seed eggNOG ortholog2880.D8LCT3
Model size1041
Hectar predicted targeting categorymitochondrion
Exons7
EggNOG free text desc.glycyl-tRNA aminoacylation
EggNOG OGsCOG0423@1,KOG2298@2759
Ec32 ortholog descriptionGlycyl-tRNA Synthetase (N-terminal region)
Ec32 orthologEc-07_006790.1
Cds size1041
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9650.17663.1prot_E_fasciculatus_S2_contig9650.17663.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9650 194..5263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842611.1901433-CDS-E_fasciculatus_S2_contig9650:193..4991696842611.1901433-CDS-E_fasciculatus_S2_contig9650:193..499Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9650 194..499 +
1696842611.2022898-CDS-E_fasciculatus_S2_contig9650:1735..18821696842611.2022898-CDS-E_fasciculatus_S2_contig9650:1735..1882Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9650 1736..1882 +
1696842611.212206-CDS-E_fasciculatus_S2_contig9650:2353..24551696842611.212206-CDS-E_fasciculatus_S2_contig9650:2353..2455Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9650 2354..2455 +
1696842611.223055-CDS-E_fasciculatus_S2_contig9650:2857..29711696842611.223055-CDS-E_fasciculatus_S2_contig9650:2857..2971Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9650 2858..2971 +
1696842611.2334695-CDS-E_fasciculatus_S2_contig9650:3792..39451696842611.2334695-CDS-E_fasciculatus_S2_contig9650:3792..3945Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9650 3793..3945 +
1696842611.243799-CDS-E_fasciculatus_S2_contig9650:4541..46311696842611.243799-CDS-E_fasciculatus_S2_contig9650:4541..4631Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9650 4542..4631 +
1696842611.2539754-CDS-E_fasciculatus_S2_contig9650:5134..52631696842611.2539754-CDS-E_fasciculatus_S2_contig9650:5134..5263Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9650 5135..5263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9650.17663.1

>prot_E_fasciculatus_S2_contig9650.17663.1 ID=prot_E_fasciculatus_S2_contig9650.17663.1|Name=mRNA_E_fasciculatus_S2_contig9650.17663.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=347bp
AGRATLARSNPLGRAGSGSSASQQFRRTHRTAQRVAATTSTRRSMVASSS
AAGADTAGKGGAVDEEGGGDAAGGGAGGEPGCSMEELVGLCKRRGFVFPS
SEIYNGFAGFFDYGPLGVELKKNIKDAWWRDVVQARDDIVGLDSSIISNP
KVWEASGHVAGFSDPMVDCKESKLRYRADQLFYGKVELEDGEVIGYVSVL
ESGTMQEEADAAANKMKRKAAKQGTLKAVSLKDLSRISAEELELVPSPAT
GTPGALTPPREFNLMFQTNVGAMADASSVAYMRPETAQGIFTNYKNVQQS
ARTKVGKAFRNEITPRNFIFRSREFEQMEVEYFVEEGDAWKQVRQTY
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mRNA from alignment at E_fasciculatus_S2_contig9650:194..5263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9650.17663.1 ID=mRNA_E_fasciculatus_S2_contig9650.17663.1|Name=mRNA_E_fasciculatus_S2_contig9650.17663.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5070bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9650:194..5263+ (Ectocarpus fasciculatus EfasUO2)
GCAGGTAGGGCGACCCTTGCGCGGTCCAACCCCCTGGGCCGAGCCGGCAG CGGTTCCTCCGCTTCGCAGCAGTTCCGCCGCACGCACCGAACGGCCCAGA GAGTAGCCGCTACCACCTCCACGAGGAGAAGCATGGTGGCATCGTCTTCG GCTGCCGGCGCCGACACCGCCGGCAAAGGGGGTGCCGTGGATGAGGAGGG GGGGGGGGATGCTGCCGGCGGGGGCGCTGGCGGGGAGCCCGGGTGTTCGA TGGAAGAGCTGGTGGGGCTGTGCAAGCGCAGGGGCTTCGTGTTCCCTTCG TCGGAGGTGTGTGTGTGTGTGTGTTTGTTCCACCGCGTTGCCCGCATTGG TGGAAGACGTGAGTGCATGCGTGTGTGCGTATATTTTCTTATGGTAGCGC GCAAACGCGGCAATCTCTTGACCAATGAAATGACGTCAGTCTCAAACTGA AAAATCGCTGTGTTTGTTTTGTTATCATTGTTATACTAGCAGCAGCAGCG ACCGCGCTAACCGGCTGACCAGTGAGAAGACATCAGTCTCAGTGCCGTTT CAAACACATGACGCTGCTAAAGGCCATGAATTGAGACCCCGTGTGGGGGC ATCATGGGGGAGGTTTCGTTACTCTCCGGATTAGGTGTGTGTGTGTGCCT GTATTTTAGCATCGGCCGCGCTAACCGACGAACCAATGAAGAGGCGTCAG TCTCGGTGCGGCTGGCTTATTGCGCCAACCAGCAGCAGGCGGCGACATAC AAGACACACCTCGGAGACATCGAGTTAAGCGGGAGAAATACCGACATTTC ACGCGTTTTACCGTGCTGCCTGCGTGTTGACTTGTGTTGATGATTCGGCA ATATTGCAACCGGCGAACAATAACTATATAAACACCAGGTTATTTTCACT GCAACACAACACACACAGCAGTAGTAATGGGAATCGGGGTACTTTATCCC TCAATTTTCCGACTTGAAGAACTCGAGCTTGAAAGGCGAAGGTCTGCACA CAGCAGTGGTGACGTGGGTTCTAACCCTGCTACCTGGTCCGGCAAGTTTG CTACTGGCCAACCATATGAACACCAGACGCTTTAGCTGCAGTACTAGGAC ATGGGGGAAACTGAAAGCAATCGATATTTGCCCGACTTTGAAGAACTCAA GCTTGAAAGGCGAAGACCTAACCCTGTAACCTACCTGTGTGGGGTGAAGG TCCGGCATTTTTGCAGCTGGCGAACAAACAACTATGTTAACACCAGGCTC TTAGCAGCAGTACCAAGTACGACATTTTTTCGTGCCATGAACAAGTGAAG AATTTGAAAACCTACGTGTGGTTGGTGACCTGAGTCCTTGCCCGGCTGCT TGTGTGTTGACGGCCCTGGCACTTTTGCAACTGGCGAAATATGTGAACGC CAGACTTTCGCTGCAGTATTTACATTCCACAACCTTCCAATTTTGAACAG TTTCGATCTTGGAGGGCGAAGGAAGACCTGCGTGCCGTGACGTGATTCCT ATCCCGGCTGCCTGTGTGTTGTCGCCCCCGCTCGTCCGGCAGATCTACAA CGGTTTTGCGGGGTTCTTCGACTACGGCCCGCTAGGGGTAGAGCTGAAGA AGAATATCAAGGACGCTTGGTGGAGGGATGTTGTCCAGGCGCGCGATGAC ATCGTCGGCCTCGACTCTTCCATCATCAGCAACCCTAAGGTCGGGAGATA GCGCTGCTGCTGTGGATATTGTTGTGGGCAATCCGTGTGGCCATGGACGA CGTGGTCAGGAACGAGAGAACGAGAAAAGGACAGGCAGATACAGATACAC AGAGAGAGAGATAGAGGACATGCAGAGAGAGAGACAGAGACAGCGACTCA GGGAGAGGGAGAGGGAGAGAAAGACGAGCAAAGACAGAGGGCCAGAGAGA CAAGAGAGAGAGAGGGAGAGGGAGAGACCGACAGACAGACAGACAGACAG ACAGACAGACAGACAGGGAGGACAGAGAATGAGCGAGAGAGAAAGACGAA CAGAGACAGAGGGAAACAGAGAGGCAAGAGACAGAGGGTGAGAGACAGGC AGACAGACAGAGCAAGGACAGAGAGAGCGAGAGTGAGAGTTTGGGTGCAC ACGCCTCTCAAGATTGATTGGACGTGCGTGATCTTCCCGAACGGCGGCGG GTTTCCACAGGTGTGGGAGGCTTCTGGCCACGTCGCTGGGTTCTCGGACC CCATGGTCGACTGCAAGGAATCCAAGCTGCGGTACCGGGCCGACCAGCTG TTCTACGGCAAGGTGAATCGACGTTTAGGGTGACACTGCTGATGCACCCC GTTTTTTTTCTGAAAATAGACCATCACAGAAAGACTATCCATTCGAGATA TAACTATAAGTCGGGCGGCTAAACCCCACCCCGCACGTTGCTGTTGTTTT CGTTGGTAGTGTCTTGCACAGCAAAACGTAGGTTGCGGTGTGCTCTTGTA TCTATTTTTTGGCAATGGTGTTGATACTATGTTGCACAAGAGAAAACGTA GTTTTCGCGGTGTATGTTTTGTACAGATTATTTCCGGCAGTGATGTCCCG TGCAAAATGGTGGTGTTGTTGTTGGCAATATTTTGCGGTGTGTTTTTGTC CTTACTTTATTTTCGGTAGTGTTGATGTCCCGTGCAATTGTTCTCTTGTG TTTGCTCCTCGCAGGTGGAGTTGGAGGATGGAGAGGTGATCGGTTACGTA TCGGTGCTGGAGTCGGGCACCATGCAGGAGGAGGCAGACGCGGCCGCGAA CAAGATGAAGCGCAAGGCCGCGAAGCAGGTGCTTGTCATCCTTGGCTTGT TCGGGGTCTGAGGATTGAGGTCATCATGCTAAAAACATACGAAGAGCGTG TAACATGAAGTGAGACTATCGACGGAACGACATGGGCCCATACATGTATT TGCAAAACAATCTTGCCGGAGGCGACAACGATCGTTGGTAACCAACGGCT ACTACTATTGAAACACAGTATTACGAGACACAAAATGCTGCGGGATTCAA CAATGACCTCCGAACTGAAAAGCTTCAAGTTGCGAGGCCTAGCTTTTCCC CATCATAACCACAGGTCAAACGGGTGTTAGCTGTTCTGAATATTCTTAAC GCCAAGAAATAGAGGAGAAAGTTCTCACTGGAATACGAGGGGTTTCAGTT GGTTGTTTCACTGACCGAAATGTCACCGTTCACTGTCTCCAAATGGAGGT GCTTCGCTACCTAGGGGTGCAGCTTATGTCCTTGTCAATTTTCATGCATG CCGTTGATCGGTTGGTTCTTTTGGCAGGATTTGAAGAAGAAAAAAAGGAG GCCGACCGGATGGAATGGATGGGAGGGCAAGGCTAAACCTACCTCCGTCC AGAACATAACTTACTTCATTCCATTCCGCACATTGTTGTTTTCCAACGGT AGACAAGTTGTCACATGCTGACCCAAAATAGAGTACACGAAAAACGCTAT CAATAGTGTGGGTGACGTGTATCAAATTTCTCGTGTTTTTTTTCGTTTCG TGTAGGGGAAGGACGTACACACGCATTAGAAAAAACATAAAGTTTAAGGA AAATGTCTCGTGCGTTGTGAATCACTCTGCTGAATTTGTTTGTGGTCAGG GAACGCTCAAGGCGGTGTCTCTGAAGGACCTGTCGAGAATAAGTGCGGAG GAGCTGGAGCTGGTCCCCTCGCCGGCCACAGGGACCCCGGGAGCGCTAAC GCCTCCTCGGGAGTTCAACCTCATGTTCCAGACAAACGTCGGGGCTATGG CGGTGAGCACCAACAATCAGTGCGCGAGACAACAGTTTTGGACCGTTTCT TGTGATGAATTTTTGCATGTTGTTCTGGGTTTGTTGATTGTCGAGACAAA CGAGAGCCGGACACAAAAAGAACAAGAATTACACGAGTATGTTGTGTTTT TGGGGCTTAGAGGCAGGATGTATCGAGCACATCACCATTATTTTGTTGTT GGCGACATATTTGGTTGGTTTAGTACGTTTTGTTTTTCAACCCAGTGTAG GTCTGCACGATGAAGGGATGGATGTTCTTTGCGACGTCCGCTTTTCGTGC TCTTGGTGCAGTTGTTGCACCTGTTGGCAGATCGAGAGAATACCCGGCAT GACAAAACGCCGAACGAAGACATCATCTCCGCAAGGGCGTCACCGCCATG CTTTATTGTAGAAATCCTACCCTGGATTGTCGACCTCAGTTTTGTTTCAG GCCAGTGTCGGATGGAGTTGCGGTAACGATACAGTTGGTTTGTCGAATGT GATTGTGGCAAGAGTGGCCACCGTCGTAAAGTGCGCCGACCCCGCCGCCG CCGCCTCTCCACCGCTGCCCCATTCACCTATGCAAACATACGAGACAGGA CGCGAGCTCGGTGGCCTACATGAGGCCTGAGACGGCTCAGGGCATCTTCA CCAACTACAAGAACGTGCAGCAATCAGCGCGCACCAAGGTTCGTCGTCAA GTGTTTTTCTCGATTTTTCTTGTGTGTTTTTCTTGTGATTGTCGACAATG GATTGTTGTTGTTGTTCTGTTGTTGTTGTTGCCGTTGTTGTTGTTGTTGT TGTGGTTGCTGCTGTTGTTGTCCCTGCTCAGTACCTTCTAGAACATTTTA ACATCCGAACTGACGCGGCTAACTGTCCCAAAAGGTCACCAAAGAGAAGT TCTACAGGAAATTCCCGTAGCATAAAGTCTCTCTGATTTATACATACTCT TGCCGGGATTGTGTTCCTTGTTTTTCTTTTCCTTTTTCTAGTTTTTTTTT TTTCCACCTCTAGCAATCAGCGCTTGCGGCATTCGGTGCCGCGTACTCCA ACCATATATAATATAGTGTAGAGTGCGCGTTCGACCAAAGAACCACCTAC ATGTACATGTGCATGCAGAAAATATCTTGCGGTGTAACCCTTGTGTGTGC TTTTTTTTTTTTGTCTCCAGGTTCCGTTTGGGATCGCGCAGGTGGGCAAG GCCTTCCGCAACGAGATCACCCCGAGAAACTTCATCTTCCGGTCCAGGGA GTTCGAGCAGATGGAGGTGGAGTACTTCGTCGAGGAAGGGGACGCCTGGA AACAGGTGAGACAGACTTAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9650:194..5263+

>mRNA_E_fasciculatus_S2_contig9650.17663.1 ID=mRNA_E_fasciculatus_S2_contig9650.17663.1|Name=mRNA_E_fasciculatus_S2_contig9650.17663.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1041bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9650:194..5263+ (Ectocarpus fasciculatus EfasUO2)
GCAGGTAGGGCGACCCTTGCGCGGTCCAACCCCCTGGGCCGAGCCGGCAG
CGGTTCCTCCGCTTCGCAGCAGTTCCGCCGCACGCACCGAACGGCCCAGA
GAGTAGCCGCTACCACCTCCACGAGGAGAAGCATGGTGGCATCGTCTTCG
GCTGCCGGCGCCGACACCGCCGGCAAAGGGGGTGCCGTGGATGAGGAGGG
GGGGGGGGATGCTGCCGGCGGGGGCGCTGGCGGGGAGCCCGGGTGTTCGA
TGGAAGAGCTGGTGGGGCTGTGCAAGCGCAGGGGCTTCGTGTTCCCTTCG
TCGGAGATCTACAACGGTTTTGCGGGGTTCTTCGACTACGGCCCGCTAGG
GGTAGAGCTGAAGAAGAATATCAAGGACGCTTGGTGGAGGGATGTTGTCC
AGGCGCGCGATGACATCGTCGGCCTCGACTCTTCCATCATCAGCAACCCT
AAGGTGTGGGAGGCTTCTGGCCACGTCGCTGGGTTCTCGGACCCCATGGT
CGACTGCAAGGAATCCAAGCTGCGGTACCGGGCCGACCAGCTGTTCTACG
GCAAGGTGGAGTTGGAGGATGGAGAGGTGATCGGTTACGTATCGGTGCTG
GAGTCGGGCACCATGCAGGAGGAGGCAGACGCGGCCGCGAACAAGATGAA
GCGCAAGGCCGCGAAGCAGGGAACGCTCAAGGCGGTGTCTCTGAAGGACC
TGTCGAGAATAAGTGCGGAGGAGCTGGAGCTGGTCCCCTCGCCGGCCACA
GGGACCCCGGGAGCGCTAACGCCTCCTCGGGAGTTCAACCTCATGTTCCA
GACAAACGTCGGGGCTATGGCGGACGCGAGCTCGGTGGCCTACATGAGGC
CTGAGACGGCTCAGGGCATCTTCACCAACTACAAGAACGTGCAGCAATCA
GCGCGCACCAAGGTGGGCAAGGCCTTCCGCAACGAGATCACCCCGAGAAA
CTTCATCTTCCGGTCCAGGGAGTTCGAGCAGATGGAGGTGGAGTACTTCG
TCGAGGAAGGGGACGCCTGGAAACAGGTGAGACAGACTTAC
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