mRNA_E_fasciculatus_S2_contig965.17661.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: IPPc (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN8_ECTSI) HSP 1 Score: 273 bits (698), Expect = 7.090e-82 Identity = 142/163 (87.12%), Postives = 146/163 (89.57%), Query Frame = 1
Query: 1 MGSELLPLGPVGSWAGGGGGDAGVGGEHAASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNVAVDIKSQ 489
MGSELLPLGPVGSWAG G GGEH ASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKP+FDDPLWLHEWLCP E PEGK RS GDASSAP AA+AGNAES AET AS+EG+GMEDVYAIGFQELVDLNAVNVAVDIKSQ
Sbjct: 1 MGSELLPLGPVGSWAGVGXXXXXFGGEHDASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPNFDDPLWLHEWLCPAEGPEGKERSSGDASSAPPAAAKAGNAESVCAETSASEEGNGMEDVYAIGFQELVDLNAVNVAVDIKSQ 163
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: IPPc (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG62_9PHAE) HSP 1 Score: 261 bits (667), Expect = 1.260e-77 Identity = 135/161 (83.85%), Postives = 141/161 (87.58%), Query Frame = 1
Query: 1 MGSELLPLGPVGSWAGGGGGDAGVGGEHAASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNVAVDIK 483
MGSELLPLGPVGSWAG G GGEH ASEGLPSILDAIP WKRPRLLK LQERETEYT+VEGVGVFIGTWNVNAKKP+F+DPLWLHEWLCP ER EGKGRS GDASSA P A+AGNA+ AETFAS+EGDGMEDVYAIG QELVDLNAVNVAVDIK
Sbjct: 495 MGSELLPLGPVGSWAGVGXXXXXFGGEHYASEGLPSILDAIPGWKRPRLLKDLQERETEYTSVEGVGVFIGTWNVNAKKPNFEDPLWLHEWLCPTERLEGKGRSSGDASSAQPPPAKAGNADRFYAETFASEEGDGMEDVYAIGLQELVDLNAVNVAVDIK 655
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: RhoGAP (domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BMC2_POLPP) HSP 1 Score: 59.7 bits (143), Expect = 2.560e-7 Identity = 49/130 (37.69%), Postives = 61/130 (46.92%), Query Frame = 1
Query: 82 HAASEGLPSIL----DAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNA 459
H + LP ++ D AW + L+ERE E+T E + +F+GTWNVN KKP L +WLCP G G GG S+ SAGA D+YAIGFQEL DL A
Sbjct: 84 HQHQKPLPPVVYKSVDVNGAW----ISNKLKEREPEFTKKENMVIFLGTWNVNGKKPAES----LDQWLCP-----GAGVEGGGLSA------------SAGAAL--------SPDIYAIGFQEL-DLTA 179
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UTG8_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.710e-7 Identity = 41/112 (36.61%), Postives = 53/112 (47.32%), Query Frame = 1
Query: 151 KGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNVAVDIKS 486
K LQERE E++ + VF GTWNVN KK + +DP+ +W+ P AA G+ D+YAIGFQE+VDLN NV +D KS
Sbjct: 43 KQLQEREAEFSDLVPGKVFCGTWNVNGKKLEEEDPI--EDWI-------------------PVEAAA------------------GLCDIYAIGFQEMVDLNVTNVTMDGKS 115
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: synaptojanin-2 (n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00101A4D1B) HSP 1 Score: 55.8 bits (133), Expect = 6.150e-6 Identity = 41/133 (30.83%), Postives = 64/133 (48.12%), Query Frame = 1
Query: 79 EHAASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
E +A +G +LD PR+L+ + ER+ E+T + V V +GTWNVN K + L L EWL + G SG P+P ++G D++A+GF+E+V+L+A N+
Sbjct: 453 EESADKGR-MLLDNTALLVTPRILRAMSERQAEFTNYKRVRVAMGTWNVNGGKQFRSNLLGTAELAEWLL-----DSPGLSG------PEP-----------------RDGSSPADIFAVGFEEMVELSAGNI 556
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: synaptojanin-2 (isoform X2 n=1 Tax=Chlorocebus sabaeus TaxID=60711 RepID=UPI0018B0383D) HSP 1 Score: 55.8 bits (133), Expect = 6.160e-6 Identity = 39/134 (29.10%), Postives = 63/134 (47.01%), Query Frame = 1
Query: 76 GEHAASEGLPSILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
GE A +G +LD+ PR+LK + ER++E+T + + + +GTWNVN K + L L +WL + G S D+S A D++A+GF+E+V+L+A N+
Sbjct: 491 GEEMADKG-GMLLDSTALLVTPRILKAMTERQSEFTNFKRIRIAMGTWNVNGGKQFRSNLLGTAELTDWLLDSPQLSGTAESQDDSSPA---------------------------DIFAVGFEEMVELSAGNI 596
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PRZ7_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.160e-5 Identity = 37/114 (32.46%), Postives = 53/114 (46.49%), Query Frame = 1
Query: 151 KGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLWLHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAV-NVAVDIKSQ 489
K ++ RE EYT + VF+GTWNVN KKP +P+ +WL P++ G ++ K + D+Y +GFQE+VDLN NV D S+
Sbjct: 17 KQMRNRELEYTDFHSLNVFVGTWNVNGKKPS--EPI--DQWLQPKKEKIN------------------GTSQKFENNNEGKKLNSQLPDIYVLGFQEIVDLNRPSNVMSDATSK 108
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: LOW (QUALITY PROTEIN: synaptojanin-2 n=1 Tax=Onychomys torridus TaxID=38674 RepID=UPI00167FBDA5) HSP 1 Score: 54.7 bits (130), Expect = 1.540e-5 Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 1
Query: 109 ILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
+LD PR+LK + ER++E+T + V + +GTWNVN K + L L +WL + G S GD S A DV+A+GF+E+V+L+A N+
Sbjct: 501 LLDNTALLVTPRILKAMTERQSEFTNFKRVQIAVGTWNVNGGKQFRSNLLGTAELTDWLLDAPQLSGAMDSQGDGSPA---------------------------DVFAVGFEEMVELSAGNI 596
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: Phosphoinositide (5-phosphatase n=2 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A6J0DBQ8_PERMB) HSP 1 Score: 53.9 bits (128), Expect = 2.790e-5 Identity = 37/123 (30.08%), Postives = 58/123 (47.15%), Query Frame = 1
Query: 109 ILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
+LD PR+L+ + ER++E+T + V + +GTWNVN K + L L +WL + G S GD+S A DV+A+GF+E+V+L+A N+
Sbjct: 501 LLDNTALLVTPRILRAMTERQSEFTNFKRVQIAVGTWNVNGGKQFRSNLLGTAELTDWLLDAPQLSGAVDSQGDSSPA---------------------------DVFAVGFEEMVELSAGNI 596
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Match: synaptojanin-2 (isoform X4 n=2 Tax=Mus pahari TaxID=10093 RepID=UPI000A309B8A) HSP 1 Score: 53.9 bits (128), Expect = 2.820e-5 Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 1
Query: 109 ILDAIPAWKRPRLLKGLQERETEYTTVEGVGVFIGTWNVNAKKPDFDDPLW---LHEWLCPEERPEGKGRSGGDASSAPQPAAEAGNAESAGAETFASKEGDGMEDVYAIGFQELVDLNAVNV 468
+LD PR+LK + ER++E+T + + + +GTWNVN K + L L +WL + G S DAS A DV+AIGF+E+V+L+A N+
Sbjct: 501 LLDNTALLATPRILKAMTERQSEFTNFKRIQIAVGTWNVNGGKQFRSNLLGTAELTDWLLDAPQLSGAVDSQDDASPA---------------------------DVFAIGFEEMVELSAGNI 596 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig965.17661.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig965.17661.1 >prot_E_fasciculatus_S2_contig965.17661.1 ID=prot_E_fasciculatus_S2_contig965.17661.1|Name=mRNA_E_fasciculatus_S2_contig965.17661.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp MGSELLPLGPVGSWAGGGGGDAGVGGEHAASEGLPSILDAIPAWKRPRLLback to top mRNA from alignment at E_fasciculatus_S2_contig965:11980..13471+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig965.17661.1 ID=mRNA_E_fasciculatus_S2_contig965.17661.1|Name=mRNA_E_fasciculatus_S2_contig965.17661.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig965:11980..13471+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig965:11980..13471+ >mRNA_E_fasciculatus_S2_contig965.17661.1 ID=mRNA_E_fasciculatus_S2_contig965.17661.1|Name=mRNA_E_fasciculatus_S2_contig965.17661.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig965:11980..13471+ (Ectocarpus fasciculatus EfasUO2)back to top |