mRNA_E_fasciculatus_S2_contig965.17660.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig965.17660.1
Unique NamemRNA_E_fasciculatus_S2_contig965.17660.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig965.17660.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN7_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 4.410e-46
Identity = 92/127 (72.44%), Postives = 99/127 (77.95%), Query Frame = 1 
Query:    1 MSLSPSSIRAVLKSAGQRTGGVSELKRPARPGAMKSAVATADGGEGPVSVGSSPGSPREHRSPAARGRSRTPRRGLSVGRGLVPNFLRDPPPSSRCRQCAAREHKSQPHGRSRDNADGHRQGQQYGC 381
            MSLSPSSIRAVLKSAGQR GGV EL+RPARP  ++SAVATADGGEG VSVG   GS RE+RSPA RGRSRTPRRGLSVGR L+PNFLR           AARE K QPHGRS  +  GHRQGQ+YGC
Sbjct:    1 MSLSPSSIRAVLKSAGQRAGGVPELERPARPEEIESAVATADGGEGLVSVGLPAGSSRENRSPATRGRSRTPRRGLSVGRDLMPNFLR-----------AAREPKPQPHGRSSGSVGGHRQGQRYGC 116
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BLAST of mRNA_E_fasciculatus_S2_contig965.17660.1 vs.
Match: IPPc (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG62_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.030e-29
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 MSLSPSSIRAVLKSAGQRTGGVSELKRPARPGAMKSAVATADGGEGPVSVGSSPGSPREHRSPAARGRSRTPRRGLSVGRGLVPNFLRDP 270
            MSLSPSSIRAV KSAGQR GGVSEL+RPAR   ++SAVATADG EG VSVG   GS RE+RSPA RGRSRT RRGLSVGRGL+ NFLR+P
Sbjct:    1 MSLSPSSIRAVFKSAGQRAGGVSELERPARSEEIESAVATADGEEGLVSVGLPTGSSRENRSPATRGRSRTSRRGLSVGRGLISNFLREP 90
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig965.17660.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.410e-4672.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
IPPc3.030e-2977.78domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig965contigE_fasciculatus_S2_contig965:10501..11279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000910.1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842610.8882961-CDS-E_fasciculatus_S2_contig965:10500..107661696842610.8882961-CDS-E_fasciculatus_S2_contig965:10500..10766Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig965 10501..10766 +
1696842610.9035769-CDS-E_fasciculatus_S2_contig965:11140..112791696842610.9035769-CDS-E_fasciculatus_S2_contig965:11140..11279Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig965 11141..11279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig965.17660.1prot_E_fasciculatus_S2_contig965.17660.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig965 10501..11279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig965.17660.1

>prot_E_fasciculatus_S2_contig965.17660.1 ID=prot_E_fasciculatus_S2_contig965.17660.1|Name=mRNA_E_fasciculatus_S2_contig965.17660.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
MSLSPSSIRAVLKSAGQRTGGVSELKRPARPGAMKSAVATADGGEGPVSV
GSSPGSPREHRSPAARGRSRTPRRGLSVGRGLVPNFLRDPPPSSRCRQCA
AREHKSQPHGRSRDNADGHRQGQQYGCEGERRQS*
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mRNA from alignment at E_fasciculatus_S2_contig965:10501..11279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig965.17660.1 ID=mRNA_E_fasciculatus_S2_contig965.17660.1|Name=mRNA_E_fasciculatus_S2_contig965.17660.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=779bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig965:10501..11279+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCTTGAGCCCAAGCTCCATCCGCGCGGTTCTGAAGTCGGCTGGTCA
ACGCACGGGAGGCGTATCTGAACTGAAGCGACCTGCGAGGCCGGGGGCAA
TGAAATCGGCTGTCGCTACAGCTGATGGTGGGGAGGGCCCTGTTTCAGTA
GGTTCGTCACCAGGATCGCCTCGCGAACACCGGTCACCGGCGGCGCGAGG
CCGTTCGAGGACGCCTCGGCGTGGCCTGAGCGTCGGCAGAGGCCTCGTGC
CAAACTTCCTCCGTGAGTCATCGACGAGGACGAATCCCGCCGGAGCAGCC
AAGGAAGCCGAACGGGAAACGTCCACTGGGATGGCGGACGGACAGACGCC
GAGCCCCGCCATTGCACGCCCTGATTCAGGGGTGAAGCCACAACAGCAGC
AAGGAGCAGGGGCAGCGGTAGCAACTCGGAGTCAATCGCCACCCTCAGCG
CCACCACCAACGACACTGCGACGACGCGTGAGCATGAGCCTGAACCCGAG
CAACTTGAAGCGGGCCGTGGGTCTCGGCTCCCGCCAGGACAGCACGAAGA
AGAGCGACGCCACCAACAGCAGCCAGGACACGCCCGAGTACGAAGAGGAG
TTCGTTGGCGTCTCAGAACACCAAGCGCCACCCGTGAGAGTCCACCCCCG
TCCTCGCGCTGTCGCCAATGCGCAGCGAGGGAGCACAAGTCTCAACCCCA
CGGCCGCTCGAGGGACAATGCCGATGGCCATCGCCAAGGCCAACAGTACG
GCTGCGAGGGAGAGCGGAGGCAAAGCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig965:10501..11279+

>mRNA_E_fasciculatus_S2_contig965.17660.1 ID=mRNA_E_fasciculatus_S2_contig965.17660.1|Name=mRNA_E_fasciculatus_S2_contig965.17660.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig965:10501..11279+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCTTGAGCCCAAGCTCCATCCGCGCGGTTCTGAAGTCGGCTGGTCA
ACGCACGGGAGGCGTATCTGAACTGAAGCGACCTGCGAGGCCGGGGGCAA
TGAAATCGGCTGTCGCTACAGCTGATGGTGGGGAGGGCCCTGTTTCAGTA
GGTTCGTCACCAGGATCGCCTCGCGAACACCGGTCACCGGCGGCGCGAGG
CCGTTCGAGGACGCCTCGGCGTGGCCTGAGCGTCGGCAGAGGCCTCGTGC
CAAACTTCCTCCGTGATCCACCCCCGTCCTCGCGCTGTCGCCAATGCGCA
GCGAGGGAGCACAAGTCTCAACCCCACGGCCGCTCGAGGGACAATGCCGA
TGGCCATCGCCAAGGCCAACAGTACGGCTGCGAGGGAGAGCGGAGGCAAA
GCTAG
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