mRNA_E_fasciculatus_S2_contig965.17658.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig965.17658.1
Unique NamemRNA_E_fasciculatus_S2_contig965.17658.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig965.17658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN6_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.710e-11
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 YEDERHIRVGNITRRRLARDKTGAHARSLASSSSL 105
            YEDERHIRVGNIT+RRLARDKTGAHARSL SSSSL
Sbjct:  688 YEDERHIRVGNITQRRLARDKTGAHARSLYSSSSL 722
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BLAST of mRNA_E_fasciculatus_S2_contig965.17658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF41_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 9.470e-11
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 YEDERHIRVGNITRRRLARDKTGAHARSLASSSSL 105
            YEDERHIRVGNIT+RRLARDKTGAHARSL SSS+L
Sbjct:  709 YEDERHIRVGNITQRRLARDKTGAHARSLYSSSTL 743
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig965.17658.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.710e-1194.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.470e-1191.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig965contigE_fasciculatus_S2_contig965:2991..3098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size109
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842610.7570822-CDS-E_fasciculatus_S2_contig965:2990..30981696842610.7570822-CDS-E_fasciculatus_S2_contig965:2990..3098Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig965 2991..3098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig965.17658.1prot_E_fasciculatus_S2_contig965.17658.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig965 2991..3098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig965.17658.1

>prot_E_fasciculatus_S2_contig965.17658.1 ID=prot_E_fasciculatus_S2_contig965.17658.1|Name=mRNA_E_fasciculatus_S2_contig965.17658.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=36bp
YEDERHIRVGNITRRRLARDKTGAHARSLASSSSL*
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mRNA from alignment at E_fasciculatus_S2_contig965:2991..3098-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig965.17658.1 ID=mRNA_E_fasciculatus_S2_contig965.17658.1|Name=mRNA_E_fasciculatus_S2_contig965.17658.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=108bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig965:2991..3098- (Ectocarpus fasciculatus EfasUO2)
TACGAGGACGAGAGGCATATCCGGGTCGGCAACATCACGCGCAGACGACT
GGCCAGAGACAAGACCGGGGCGCACGCTAGATCACTTGCTTCGTCCTCGT
CACTGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig965:2991..3098-

>mRNA_E_fasciculatus_S2_contig965.17658.1 ID=mRNA_E_fasciculatus_S2_contig965.17658.1|Name=mRNA_E_fasciculatus_S2_contig965.17658.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=108bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig965:2991..3098- (Ectocarpus fasciculatus EfasUO2)
TACGAGGACGAGAGGCATATCCGGGTCGGCAACATCACGCGCAGACGACT
GGCCAGAGACAAGACCGGGGCGCACGCTAGATCACTTGCTTCGTCCTCGT
CACTGTGA
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