mRNA_E_fasciculatus_S2_contig964.17652.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig964.17652.1
Unique NamemRNA_E_fasciculatus_S2_contig964.17652.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig964.17652.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig964contigE_fasciculatus_S2_contig964:19177..25170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1516
Hectar predicted targeting categoryother localisation
Exons6
Cds size813
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig964.17652.1prot_E_fasciculatus_S2_contig964.17652.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig964 19650..24311 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842609.7988174-UTR-E_fasciculatus_S2_contig964:19176..196491696842609.7988174-UTR-E_fasciculatus_S2_contig964:19176..19649Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig964 19177..19649 -
1696842609.873946-UTR-E_fasciculatus_S2_contig964:24311..243771696842609.873946-UTR-E_fasciculatus_S2_contig964:24311..24377Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig964 24312..24377 -
1696842609.8890104-UTR-E_fasciculatus_S2_contig964:25006..251701696842609.8890104-UTR-E_fasciculatus_S2_contig964:25006..25170Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig964 25007..25170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842609.8114343-CDS-E_fasciculatus_S2_contig964:19649..199511696842609.8114343-CDS-E_fasciculatus_S2_contig964:19649..19951Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig964 19650..19951 -
1696842609.8209412-CDS-E_fasciculatus_S2_contig964:21124..212771696842609.8209412-CDS-E_fasciculatus_S2_contig964:21124..21277Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig964 21125..21277 -
1696842609.834302-CDS-E_fasciculatus_S2_contig964:21781..218441696842609.834302-CDS-E_fasciculatus_S2_contig964:21781..21844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig964 21782..21844 -
1696842609.8515964-CDS-E_fasciculatus_S2_contig964:22365..225541696842609.8515964-CDS-E_fasciculatus_S2_contig964:22365..22554Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig964 22366..22554 -
1696842609.8627331-CDS-E_fasciculatus_S2_contig964:24205..243111696842609.8627331-CDS-E_fasciculatus_S2_contig964:24205..24311Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig964 24206..24311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig964.17652.1

>prot_E_fasciculatus_S2_contig964.17652.1 ID=prot_E_fasciculatus_S2_contig964.17652.1|Name=mRNA_E_fasciculatus_S2_contig964.17652.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=271bp
MGRRDVHGLRCPRHLSYCRCLRQHHGNLAGIGALTAAGGCGWCYGQDEEV
WSGTESVCMGRLGRHGVHHYCSGNVLRRRQAKTYFGRSSCHGWNELLFDV
RVHRAGGRCHPGNQDCPHEGTTGLACESKETNPTTDGHLRGGRRPLQHLG
GGARADGRRPEHPYHSLHGICVAGDNGFSRDGSLHQATWGEGAPSLRRLP
GQTSSVGYPAVSSLGSITKSFLSPRATTAFEGESDEKKRWVKKEDCPIAV
GSNRGALSKKVIPMVSELLE*
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mRNA from alignment at E_fasciculatus_S2_contig964:19177..25170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig964.17652.1 ID=mRNA_E_fasciculatus_S2_contig964.17652.1|Name=mRNA_E_fasciculatus_S2_contig964.17652.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5994bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig964:19177..25170- (Ectocarpus fasciculatus EfasUO2)
GTCCGAAACCAGGTACTTGTTCGTTTCTATATCAGCGTTGCGGTGGTGGT
GGCCATTGCGTGCCTGTTCTGCATGTGGCATCTGGTTCAGCACAGCTACA
TGCCGCCAGCGGCTAAGGCAACGCATCGAGGTGTATCGCGTCGCCGACTG
ATCGCTGCGAGCAGGTATGCACTCGTTGCGTCCCCTGCCGCGGTCTCTAC
CAGTACCGCAGCTTCGTATCCCGGGCAGAATCGAAAGAGACGGCACCTGT
GCTTCGCTCTTCCGGCCGACCACATCTTGTGTAGGAATCTAGCAATCGGT
ATAAAAAGCTGGGGGTTTTCGTTGCAAGGGGTTTCGTTTCCATCTGTGGG
CGTCGTGGATCTCTCAACCAGTAAATGTAGGTTCTCAATTTCGTTCCTGG
CACAATTCGCTCGGCCCGATGTTGTCGGCACAGAACCGACATTTGCCGCA
GCGAACCTGGGACATTAGACTGGAGCTTAGGAATGCCAAAGGCGTGTTTC
AGACTTGCCCCGTGGGGAATACGCGAAGTTAACGCCCGTGGGCTTTGCTG
TGAGACCTCTGATGAACTCGGTACTCCACTCTTGGAGAAATGGGCTGCTA
GAGATGGGCTGCTAGAGATTCGAAAACCAGGCTTGACTGGTATAGTATTG
ACCTAGTGGGCGGGCCGGGCCGGGCCACCTAGAGCGACCACAATCGCGCC
AGGTGTTCTTTGCCCCTTTTGACAGCGAGACAACCGACTCCAATCGCACC
CCATTCCACCTTGCGTGGCACGCACCCCGTATCTGCCGAGCAGCGTTTCC
TTGCTTGGAACGGCGGTCGTGTTTGGCGTTGCCGCGTTTTTTGGAGGCCA
TGCGGCCATATGGGACGGCGGGATGTTCATGGTCTCCGTTGTCCTAGGCA
TCTCTCCTATTGCCGTTGCCTGCGGCAGCATCACGGCAATCTGGCTGGAA
TCGGTGCCCTCACAGGTGAATGATCTCATGACAAGCAAAAGTAACTCCTG
GTTGCACATTCGACAGGGCATCTTGGAGCAAGGGCGCAATGGAGACTTAG
CCGACTACCGTACGCCCGAGGATCGTCTGAAGCTGAATAGAGGAGCTGCG
GATTGCAAAGGGGGGTTGGGGGAATTCGGGACAAGTTTCAAAAGGCACAA
ATCTATGCTCAGTTGCGACACCCCGGCGAAACAGGTCGTTGTCCCCCAAC
GTCCGGAAATGCAGGTGTGCGTGCCTGGTGAATCAGTAAGAGCACGTGGA
AATATGTTGTATTTTTGTTTGGTTTGGTTGCACAACCCTTCTCCTCGGGT
GGATTCAGAGGAAACGGAAAGCGATTCAACCCGTTGGACCTAGAGTTTGA
TTACGGTTGTTAAATATCTGTGGAAAGCGTGGGGTCCAAACGAGCGGACC
CTACTCCTTTCGAGGAAAGTCGCTCCCCTCACCAGCACTATTGCCCATCT
TTTGACGCTCTTTCGCTGCGCTTCTTCTCAAGACATCACCCACGTTCAGG
TCAGAATGTCCAGGGTCTCAGACGCAGAGTTATTCCGCCGCCGATCCTCT
ATTCAAGAGTTTCCACGGTCTCAGGCACAACCTTGAGTGTTCATTCAGCC
TGGATTTGGAACCCACAGATTTTGCTTGCTGACAAAGCGGGGGTAGGGAT
AGGGAACACTATAGTTAGAAGTTCCAGGCTGAACACTTGAGGAGTTTATT
CTTGTTGAGGCCCTACTTGTAGAGAGTCTCAGATGGCTATTGGCGATGGA
AAAGCTCGATATCTCACACGTTGGATGTTATGAACTGCATGTGGTTGATG
TTGAGAATGCCTGCCACAAAGAAAACAGCACATGGATTATCGTGCTGTTG
AGGGAAGCGACCCTCCCCCCAGGAAAATGTCAGGTCACTAGGACCCAATG
ACCTGCTCTTGAAGCAACCAAAATCAATCCTTGAGACCAGTCACCGCTAA
TCGGTGAAATGGCTTCATTTTTGCTGCGAAAGGGCTTGGCGCATGGTCGC
CGGTTAACCCTATGGTGGCTTCGAACGGGTACGGGGTATTCTTGTTCGTT
TGTTTCTAACAGCGATCCACCCACCCATGCATGGTAACTTTCATCGTGTG
TAGCACTTAACTTTAACTTTCAGTTCTGAGCGGCAAATTGAAGCTCTATT
AATTGTGCTTCTTCTCTGTAGTGACGCGCATGGACCGTTTGGAAGATGAT
TGTCATCGAGCTCTGGGACATTTTCTGGGTCGTCTTGGTCTTGCTCGGGT
CTTTGATGCGGATAGGCTACTGTATGGCCATGAACACCCGGTTGCACAAG
GACGAAGGAGGTGCCAGGTAGAGGCCAGAACAGGTTTCAGCGTAAGAACA
AGCATCAGTAATCACAGCAGAGAGATACGACACGCCGCGCGGAGGCAGCC
GGCTGAACAACAACGTCCAAGGGTGCACTTAACGTGCCAGTGGTCATTAG
CGGTCCTGCGGCTCAGCTGTCAGTGCGCAAATTGTGCCTGTCACCCTGCC
TGTGCAATCTTGTAACGCAACCCCCGCTCAAAATGTTGTGTGGAAGACCT
GACCTTACCGAGAAAGGTGATAATCATTTCTTCTCGGGCAATCCCTCCAC
CCCATCTCCCCGCGAGCAGCTGGTGGTTGCGGGTGGTGCTATGGACAAGA
TGAAGAAGTATGGAGTGGAACGGAATCTGTGTGCATGGGGCGGCTGGGCC
GGCATGGGGTCCACCATTATTGTAGCGGCAATGTCCTTCGTCGTCGACAA
GCGAAAACTTATTTCGGCCGTTCATCTTGCCACGGGTGGAATGAGCTTTT
GTTCGGTGAGAAGCTTCCAGCAGATAGATGATGTGAGCATGCCGACGCCG
TATCTCGCTCCTGCACGTTCGAGGCAATTGCCAGCAGGCGTGGCTATTGC
TTCAAAACTGTTAATTCTTTCGCAGACAAAAGATCAAGGGGTATATTTCG
CGCGACCACTTTCAGGGGTCATGCAATATCTTGGGCATCGCACAAGGTTC
TGAAGGGGTCTCCAGAACCTGATGCACGTTGAGTAGAACGAGCCGAAATC
ATGCCAATAAGTCCTTCCGAAAATTACAGGGTAGGCCGATCACGCGTTGA
ATTTATCGTTTCTGCCTGCTAGTCACATCGGTGACCACAGTTCGTTTTCC
GGGGTGGGTGCACTATTCAGCACCCACTTCGAGTCGTGCCACGCCGTCTC
GTCATTTGATGATTCCACTCTACACGGCGTGATTCGTGGACCGACGCGTT
CAAAGTGACTTCACTTGTGGACTATGCCTGACGCACGCGCCGCTCGAAGC
ATTCCGACTTGCTGAATCCCTTACAGATGTTCGGGTTCATCGCGCTGGCG
GGCGTTGTCACCCGGGAAATCAAGATTGCCCACACGAAGGTGATGTGCAC
AATCTGGTTTGGTGTCGTGCGGGATGCGATGCATCGTGAGAGCTAATATT
GATTTGAAAGAAGGACCCGACTGCCCCAAGGCGAGTACACTGGTTAGACA
ATCCATTCAAATATGTTTCGATTATTCTACGCACATTCGATCCCTATTTT
ACCCCCAGTGTACGTAGGATCGGGTCGGGAAATGTTTGCTTGAGAACTCC
ACATCAACCTGGGTGTATCTAGATTGTCGACGGCAGGCAGCAACCGTGAG
GCACAACAGGCCTCCTAATTAAACACGGAAGACGTTTGGCCAGGGATGTT
CTCACACGTCCTGCGTCGGGAATTACGTGGGGGCAAAGTCTAAGGGACGG
ATTGCATGATTGTTGGCGGCGTGTCCAACCTCGTGCGTCAAGCACTGGAA
TGCCACAAATTTCTGATGAACCCATCAACTGGAGCGTTATTGTTCTTATC
GGTAGTATCGTTCCGGCTGGCTGTCTCTCCGGTATCTCAACAGGCACCAC
AGGACTGGCATGCGAAAGCAAGGAGACAAATCCGACGACAGACGGGCACC
TTCGTGGTGGCAGGCGGCCTCTGCAGCACCTCGGTGGCGGTGCTAGAGCT
GACGGACGCAGGCCGGAGCACCCCTATCATTCCCTACACGGTATTTGTAA
GTTGCAAAGTCAACACTCACGTTTGCATTCGACGCGATTATCGCGAGAGA
TGCCCCCTCTGGACACCGCCGTTCGGAATGCATTTTCGACAAGCTTGATC
ACTAAGACAACCAGCTCGCTAAGCGAGTATTCAAACATCCGTCGGAAAAA
TAACCTTTCATCGCCAACTACGCGCTTCCCACCGACTAACGCCTGGTTAA
ATCTATGTACCGCTCAAGGTAAGGCCAAGTTTACTCTTGTTCCTCCGACA
CAACCCGTTGAAGTCAGCTAACGGCGTGCCACCGCTCCCGCTCTCGAAGG
AGCCATGAGGCCATCAGCATTAGTGTCGCCGTCATCTACGAGAGTCTGAG
TCCACAAATCATCGCATGTTCCAAAGACCAGTTCTGGACACCACCGATGG
GGAGTTCTTGGCAGACACCGACGAACACAATCGTACCCGATCATCAGGAT
TCCACGTTTACGATAGCCACTCCCTCCCCGCTGGGGGTGTTGAATATTGT
GAACCCTCCAGGCGCTCGATGTCATGGTACCATTCATGACGCTGCGCGGT
ATCGTTTGACTCTCTTGGAGCACACAGTAACCATTGTTGTAGCGGGGGTG
CTTTTTGCTCGACCGGTAATAGTATTTGCTCCACCAGGTGGAGTAGCTCA
ATATTTTCGTCCACCAGGCAGATCTCCGCCCACAGAGCTCCAATGGACCT
CAAGCCAACTAAAAATCTAGGTTTTCCTGCTTGGGTAGGTGCTAGGTTGG
TTCCTGAGCTGGGTAGGTGCACCGGTGGAGTATCCTCTACCCACGATACA
GTTGATTTGAAGTCGATTGGAGCTCTGGAGGCGTGGTAGACGCAAATATG
AAGTTACTCCACCCGTGGATAAATAGCATTACTGGTGGAGCAAATAGCAC
TTGTGTAGTGTAGGATTGTTTCTACATGCTAGGTTGGGCGCGGGTGACTG
TAAAGGGGTTCACTGAACACATTCATACTTGACACGTGATCCACAATAAA
TAGTCCTGCCGTTTCAGCTTCATGGTGTAGGCGATAGCAACGACGAAAAT
ACTAACCAAATACTCAACGATGGTTGGAAGGACCCATTCACTATGATTTG
GTAGTTTAGCAAGTATGACCCGCGCGTCTCCTCTGAAGTTCGCACGAACG
ATGGTGCACACTATTTCAGGCGTTGCTGGGGACAATGGGTTTAGTCGCGA
CGGTTCACTTCACCAAGCCACCTGGGGCGAGGGAGCACCATCTCTACGAC
GACTGCCGGGACAGACATCATCAGTGGGCTACCCAGCTGTCTCATCTCTA
GGATCGATCACCAAATCGTTCCTGTCGCCGAGAGCGACCACAGCATTTGA
AGGGGAAAGTGATGAGAAAAAGCGGTGGGTGAAGAAAGAGGATTGCCCTA
TTGCCGTCGGATCAAATAGAGGAGCTCTGAGCAAGAAGGTTATCCCAATG
GTGTCAGAGCTATTAGAGTAATGCTTTGCTGCAGCAACTAGTGTTCTACA
TGTAGAGTGACTGTCTTGTTTACGTAGTGTACTTGTGTAGGGGACACAGA
GAGAGGCAGTTTGGCTTGGCCCTGTTTGCGCGGCCAAGACAGGGAATGGA
TGTGAACGAACATCGAGATACACAGTAATAATAGGGCATGAGGGGAATGC
CAAGGGCCGTGAGGATTCCTCTATGTATTAAGACTGCAGGAGAGTCCCGT
GGGAGAGTCCCGTGGGAGAGAGACAAATTGGTGTCGAGCACCGCCGCGAC
GTTGCCATCATCTTGACACATGCGAATGAGCTTTATCGATAGTGGCATAC
TGCGGACGATCCGACTTTGAGTAAAGTTACAGGAGTGCGCGTTCTTCGAA
TGGTGTGGTGGGAAACGTGCAACGACCCGACCACTTGACCAAGCAAGTGT
GGATTTCATCTTCCAAGCTCTTCCTACAACTTGGAAGCAGCCCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig964:19177..25170-

>mRNA_E_fasciculatus_S2_contig964.17652.1 ID=mRNA_E_fasciculatus_S2_contig964.17652.1|Name=mRNA_E_fasciculatus_S2_contig964.17652.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=813bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig964:19177..25170- (Ectocarpus fasciculatus EfasUO2)
ATGGGACGGCGGGATGTTCATGGTCTCCGTTGTCCTAGGCATCTCTCCTA
TTGCCGTTGCCTGCGGCAGCATCACGGCAATCTGGCTGGAATCGGTGCCC
TCACAGCAGCTGGTGGTTGCGGGTGGTGCTATGGACAAGATGAAGAAGTA
TGGAGTGGAACGGAATCTGTGTGCATGGGGCGGCTGGGCCGGCATGGGGT
CCACCATTATTGTAGCGGCAATGTCCTTCGTCGTCGACAAGCGAAAACTT
ATTTCGGCCGTTCATCTTGCCACGGGTGGAATGAGCTTTTGTTCGATGTT
CGGGTTCATCGCGCTGGCGGGCGTTGTCACCCGGGAAATCAAGATTGCCC
ACACGAAGGCACCACAGGACTGGCATGCGAAAGCAAGGAGACAAATCCGA
CGACAGACGGGCACCTTCGTGGTGGCAGGCGGCCTCTGCAGCACCTCGGT
GGCGGTGCTAGAGCTGACGGACGCAGGCCGGAGCACCCCTATCATTCCCT
ACACGGTATTTGCGTTGCTGGGGACAATGGGTTTAGTCGCGACGGTTCAC
TTCACCAAGCCACCTGGGGCGAGGGAGCACCATCTCTACGACGACTGCCG
GGACAGACATCATCAGTGGGCTACCCAGCTGTCTCATCTCTAGGATCGAT
CACCAAATCGTTCCTGTCGCCGAGAGCGACCACAGCATTTGAAGGGGAAA
GTGATGAGAAAAAGCGGTGGGTGAAGAAAGAGGATTGCCCTATTGCCGTC
GGATCAAATAGAGGAGCTCTGAGCAAGAAGGTTATCCCAATGGTGTCAGA
GCTATTAGAGTAA
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