mRNA_E_fasciculatus_S2_contig9638.17648.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9638.17648.1
Unique NamemRNA_E_fasciculatus_S2_contig9638.17648.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ4_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.130e-54
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  267 GGGAGSSGTMLGAMLGGRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQAS 542
            G GAGSSGTMLGAMLGGRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ S
Sbjct:   90 GAGAGSSGTMLGAMLGGRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQVS 181
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BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT9_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.790e-52
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 3 
Query:  270 GGAGSSGTMLGAMLGGRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            GGAGSSGTMLGAMLGGRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ
Sbjct:   89 GGAGSSGTMLGAMLGGRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 177
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BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6A0_PHATR)

HSP 1 Score: 125 bits (313), Expect = 1.800e-33
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 3 
Query:  327 HKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            + K+K P LRRGKWTPEEE YANRLI EFK+GLLPLTDGTTLRTFLS +LNCDPMRISKKFVGSNCIGKQ
Sbjct:   47 NNKKKGPPLRRGKWTPEEEAYANRLILEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ 116
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BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NX07_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.550e-33
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 3 
Query:  330 KKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            K +K P LRRGKWTPEEE YANRLI EFKAGLLPLTDGTTLRTFLS +LNCDPMRISKKFVGSNCIGKQ
Sbjct:  154 KSKKGPALRRGKWTPEEEAYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ 222
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BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6Z5_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.260e-32
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 3 
Query:  345 PGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            P LRRGKWTPEEE YANRLI EFKAGLLPLTDGTTLRTFLS +LNCDPMRISKKFVGSNCIGKQ
Sbjct:   37 PPLRRGKWTPEEESYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ 100
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BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7I4_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.160e-31
Identity = 60/69 (86.96%), Postives = 62/69 (89.86%), Query Frame = 3 
Query:  330 KKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            KK K  GLRRGKWT EEE YANRLIQEFK+GLLPLTDGTTLRTFLS +LNCDPMRISKKFVG NCIGKQ
Sbjct:   50 KKAKSNGLRRGKWTAEEEAYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQ 118
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BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7J8_CYCTE)

HSP 1 Score: 119 bits (298), Expect = 8.450e-31
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 3 
Query:  360 GKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            GKWTPEEE YANRLIQEFKAGLLPLTDGTTLRTFLS +LNCDPMRISKKFVGSNCIGKQ
Sbjct:    1 GKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ 59
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BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WDK3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.050e-31
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:  327 HKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            +KK+ PP LRRG+WT EEE YANRLIQEFKAGLL LTDGTTLRTFLS  LNCDPMRISKKFVGSNCIGKQ
Sbjct:   69 NKKKSPP-LRRGQWTAEEEAYANRLIQEFKAGLLHLTDGTTLRTFLSKFLNCDPMRISKKFVGSNCIGKQ 137
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.020e-30
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 3 
Query:  351 LRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            LRRGKWTPEEE YA RLIQEFK+GLLPL DGTTLRTFLS +LNC+PMRISKKFVGSNCIGKQ
Sbjct:   20 LRRGKWTPEEEAYATRLIQEFKSGLLPLADGTTLRTFLSKLLNCEPMRISKKFVGSNCIGKQ 81
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAB7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.440e-30
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 3 
Query:  333 KQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQ 536
            K+   GLRRGKWTPEEE YANRLIQEFK+GLLPLTDGTTLRTFLS +LNCDPMRISKKFVGSNCIGKQ
Sbjct:   50 KKSTSGLRRGKWTPEEESYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQ 117
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9638.17648.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.130e-5497.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.790e-52100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.800e-3385.71protein (Fragment) n=1 Tax=Phaeodactylum tricornut... [more]
Hypothetical6.550e-3388.41protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Hypothetical3.260e-3292.19protein (Fragment) n=1 Tax=Odontella aurita TaxID=... [more]
Hypothetical1.160e-3186.96protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical8.450e-3194.92protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID... [more]
Hypothetical9.050e-3185.71protein (Fragment) n=1 Tax=Eucampia antarctica Tax... [more]
Hypothetical1.020e-3088.71protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Hypothetical1.440e-3088.24protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9638contigE_fasciculatus_S2_contig9638:2614..4071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score167.5
Seed ortholog evalue2.6e-39
Seed eggNOG ortholog2880.D8LTT9
Model size551
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28HE3@1,2QPS9@2759
Cds size258
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842609.6687193-UTR-E_fasciculatus_S2_contig9638:2613..29061696842609.6687193-UTR-E_fasciculatus_S2_contig9638:2613..2906Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9638 2614..2906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842609.681269-CDS-E_fasciculatus_S2_contig9638:2906..30101696842609.681269-CDS-E_fasciculatus_S2_contig9638:2906..3010Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9638 2907..3010 +
1696842609.690562-CDS-E_fasciculatus_S2_contig9638:3917..40711696842609.690562-CDS-E_fasciculatus_S2_contig9638:3917..4071Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9638 3918..4071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9638.17648.1prot_E_fasciculatus_S2_contig9638.17648.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9638 2907..4071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9638.17648.1

>prot_E_fasciculatus_S2_contig9638.17648.1 ID=prot_E_fasciculatus_S2_contig9638.17648.1|Name=mRNA_E_fasciculatus_S2_contig9638.17648.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=86bp
MLGAMLGGRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDG
TTLRTFLSIMLNCDPMRISKKFVGSNCIGKQASKT*
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mRNA from alignment at E_fasciculatus_S2_contig9638:2614..4071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9638.17648.1 ID=mRNA_E_fasciculatus_S2_contig9638.17648.1|Name=mRNA_E_fasciculatus_S2_contig9638.17648.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1458bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9638:2614..4071+ (Ectocarpus fasciculatus EfasUO2)
AAGGCTGCTGCGCACGCCGCAGCTTGCGCGGACGGCCTCCTCACCGCGGT
GGAAACCCCTCCGTCGAACGGCGACGGCAGCAGTGGCAGCAGCGCCGCCG
GCTCCCCGGCGGCGCACGGCGGGACCGGTAACAGCGTTGTCGGCGGCGGG
GGGCGAGCGGGGACGCGAAGCGGCGGGAGCGTGGGCTTGGGCAGCCCGCG
CGCCAAGCAAGAAGCCCAGCAGGCGTTGGCCCATCAGCAGCAGGCCGGCG
GCGTTCGGAACGGTGGGGGGGGGGAGCGGGGTCTTCGGGCACCATGCTGG
GAGCCATGCTTGGCGGCAGAGGGGGGCACAAGAAGCAGAAGCCCCCCGGG
CTGAGGAGGGGGAAATGGACGCCCGAGGAGGAGAAGTACGCCAACCGGTG
AGAGAGGGTCTTGTCTTCTTGTGCTCCTCGTGTCCCTTGTTCGCCCTAAG
AATGGAGGATGCGGGGGGTAGATAGATAAACTGCCCGCGCAAAGAAAAGT
ACGTTTTGTATAAAAAATGACCAGGCAGAGGTCCCTCAGGCCCTGTAACA
ACCCTAATCCTCAATCCCGAATTTGCCGATTCTGTACTTTATCTAGGATG
TTGTCTTACTTGGAAGGAACACCCTACTGCCACACGAGGGGGTTACATGT
GCACGGCGGTGCTCGTCGAAATAATAAGGGTGCGATACAATCCTTCCGTG
GCCTTCTTATGCTGTCAAGCTCTTAACACTATACACACGCGCAGCTGTGT
GAGTTGTTGATATGCTCGACGGATGGGTACTGTACCAGGCACCATCAGCC
CGCGCGCTTTCCAGGGGGGGCGGTTCGGGAATCGCCTTTGTTCGGTTCAC
CAGTACATACCCAGCTTTGGCTTGACATGGTGTCGGTGTTTTTTTCTCAA
CTGCGGTTGTTGTTTTTCTCTCGAGACAACGTTCACACCTCGTCTGGACG
TTGCTTGCCCTTGCTTGACAACATCTCTTCCTATCCTTAGTGGCTGAGCT
GCCGTTGTCGGGGTGATCCGTCTTGGTCTTGCACGCATGAAATAGTCGAG
TTTCCAAGGGAAACAACACCCACACGAGATGGTGGCTGTATTTCCAATGT
TTTTCACCATTTGTTGGACCACGCCGCGTAACAAGGGTTGGTTCGTATTG
CATCACCTGTACGATATATTGTGACCATGTACCTTTTCCGAAGCGGAAAT
TTCTGTACCCTCTTGTGTTACTAGGAAAGCATCTGAGCAAAATGTGTGAT
CGCCTCTCTACCCCCCCCCCTTCCCAACCCCCTTGGGATTGCGTCTCCGT
GCAGGTTAATCCAAGAGTTCAAGGCGGGGCTGTTGCCGCTCACCGACGGA
ACGACTCTCAGAACGTTCCTCAGCATCATGCTCAACTGCGACCCCATGCG
CATCTCGAAGAAATTCGTCGGCTCGAACTGCATCGGGAAGCAGGCAAGCA
AGACGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9638:2614..4071+

>mRNA_E_fasciculatus_S2_contig9638.17648.1 ID=mRNA_E_fasciculatus_S2_contig9638.17648.1|Name=mRNA_E_fasciculatus_S2_contig9638.17648.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9638:2614..4071+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGGGAGCCATGCTTGGCGGCAGAGGGGGGCACAAGAAGCAGAAGCC
CCCCGGGCTGAGGAGGGGGAAATGGACGCCCGAGGAGGAGAAGTACGCCA
ACCGGTTAATCCAAGAGTTCAAGGCGGGGCTGTTGCCGCTCACCGACGGA
ACGACTCTCAGAACGTTCCTCAGCATCATGCTCAACTGCGACCCCATGCG
CATCTCGAAGAAATTCGTCGGCTCGAACTGCATCGGGAAGCAGGCAAGCA
AGACGTAG
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