mRNA_E_fasciculatus_S2_contig9627.17639.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9627.17639.1
Unique NamemRNA_E_fasciculatus_S2_contig9627.17639.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9627.17639.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 6.060e-29
Identity = 65/85 (76.47%), Postives = 65/85 (76.47%), Query Frame = 2 
Query:    2 ALEARSMKKAATLPVMPRVSLLLPSNRPKGGRKSVQFQV------------------PENEGLDSDTTDSPLPEFLSNPDVRFEV 202
            ALEAR MKKAATLP MPRVSLLLPSNRPKGGRKSVQFQV                  PENEGLDSDTTDSPLPEFLSNPDVRFEV
Sbjct:  556 ALEARLMKKAATLPAMPRVSLLLPSNRPKGGRKSVQFQVGIMRCDRVVVQCTATAVVPENEGLDSDTTDSPLPEFLSNPDVRFEV 640
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BLAST of mRNA_E_fasciculatus_S2_contig9627.17639.1 vs.
Match: NB-ARC (and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.270e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:   80 RPKGGRKSVQFQVPENEGLDSDTTDSPLPEFLSNPDVRFEVT 205
            RPKGGRKSVQFQVPENEGLDSDTTDSPLPEFLSNPDVRFEVT
Sbjct:  161 RPKGGRKSVQFQVPENEGLDSDTTDSPLPEFLSNPDVRFEVT 202
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9627.17639.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.060e-2976.47protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
NB-ARC3.270e-19100.00and TPR repeat-containig protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9627contigE_fasciculatus_S2_contig9627:2788..3729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.940047-CDS-E_fasciculatus_S2_contig9627:2787..29021696842608.940047-CDS-E_fasciculatus_S2_contig9627:2787..2902Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9627 2788..2902 +
1696842608.950652-CDS-E_fasciculatus_S2_contig9627:3635..37271696842608.950652-CDS-E_fasciculatus_S2_contig9627:3635..3727Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9627 3636..3727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9627.17639.1prot_E_fasciculatus_S2_contig9627.17639.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9627 2788..3727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9627.17639.1

>prot_E_fasciculatus_S2_contig9627.17639.1 ID=prot_E_fasciculatus_S2_contig9627.17639.1|Name=mRNA_E_fasciculatus_S2_contig9627.17639.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=69bp
GAGGAVDEEGGHAAGHAARFAAPALQQAEGGPEVCAVPGAGERGPRLGHD
GLAAPGVPVQPGRAVRGHP
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mRNA from alignment at E_fasciculatus_S2_contig9627:2788..3729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9627.17639.1 ID=mRNA_E_fasciculatus_S2_contig9627.17639.1|Name=mRNA_E_fasciculatus_S2_contig9627.17639.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=942bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9627:2788..3729+ (Ectocarpus fasciculatus EfasUO2)
GGCGCTGGAGGCGCGGTCGATGAAGAAGGCGGCCACGCTGCCGGTCATGC
CGCGCGTTTCGCTGCTCCTGCCCTCCAACAGGCCGAAGGGGGGCCGGAAG
TCTGTGCAGTTCCAGGTGGGGATCGCGCAGTGTGATGTGGTGTGGTGCAG
TGTTAGCGCGTCCGCGCTTGTAGATACAAGTGTAATATTATCTTATCGTT
CGAGTCTTGGTCTTGCTGGTGTGCGCGATGTCCGTTGTCGGACGTGGTTG
TGCTTGGCTTGGAGTCGAATTCGGGACCCCGCCAAACGCTCGAACGCGGC
ATGACTCCACACCAGCGAAGCAAGTTAGTCGTATGAAGCATTCAACAGCA
GTGCACATGGCCATTTTCTGCGAAACAGAGGGGGCCCGAGGTCAAGGGGA
AGTGGGGTGGGGTGGGGGGGGGTGGGTGACGGACTACGTTGTGTAGTCCC
CGTTACTCCGAGCACGCTGTACCGTTGTATTGACGCACTGCAGGATTGTT
CACGAATTGCGATGTGTATCTACATGCACCGAGTACAGTAGTCTTGAAGA
CACTAGGTCCCGCTGTGCAGTTCTATTGTTTCGTGTTGCTGGTGTATTTT
TGATTCTGGTGCATCTTCTCTCCCTCCCTGCGGCCGTCCGCTTCAGTGCC
CTGCTGTGGCTGCCGTTGTCTCTTACTCTCAAAAAACAAACGAAACCTCA
CAGCCTCAACAACAACAGCAACCAACAACCAACAACCAACAACCAACACC
ACAGCACCAATTTAACAAAACATCATTGTCACCAACAACAAAAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGGT
GCCGGAGAACGAGGGCCTCGACTCGGACACGACGGACTCGCCGCTCCCGG
AGTTCCTGTCCAACCCGGACGTGCGGTTCGAGGTCACCCCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9627:2788..3729+

>mRNA_E_fasciculatus_S2_contig9627.17639.1 ID=mRNA_E_fasciculatus_S2_contig9627.17639.1|Name=mRNA_E_fasciculatus_S2_contig9627.17639.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=207bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9627:2788..3729+ (Ectocarpus fasciculatus EfasUO2)
GGCGCTGGAGGCGCGGTCGATGAAGAAGGCGGCCACGCTGCCGGTCATGC
CGCGCGTTTCGCTGCTCCTGCCCTCCAACAGGCCGAAGGGGGGCCGGAAG
TCTGTGCAGTTCCAGGTGCCGGAGAACGAGGGCCTCGACTCGGACACGAC
GGACTCGCCGCTCCCGGAGTTCCTGTCCAACCCGGACGTGCGGTTCGAGG
TCACCCC
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