mRNA_E_fasciculatus_S2_contig962.17631.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig962.17631.1
Unique NamemRNA_E_fasciculatus_S2_contig962.17631.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig962.17631.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA1_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 6.480e-151
Identity = 222/235 (94.47%), Postives = 225/235 (95.74%), Query Frame = 1 
Query:    1 MATEMTRTAGKRPGFSQAVTLAWLVGLLQAAKAFSFTACPSVGALRNVATSSAPFQRKLSRRRSLNRDPGGVSSLKAIGVTSSVIESVAKGILNLALANPRQATVECTVNSSAMNLVRGNLEQAKVDGLNWVTPMGMTLRTIALTLNEMNIKPSEVFRGKILFKCPAEGEALIELDAQDFGNFLVHPLLTTADLPSGKFDFRREGTALDIERGRATFTGIWQGQPVVMEACQPDR 705
            MATE+TRTAG RPGFSQ VTLAWLVGLLQAA+AFSFTA  SVGALRNVA SSAPFQRK  RRRSLNR  GGVSSLKAIGVTSSVIESVAKGILNLALANPRQATVECTVNSSAMNLVRGNLEQAKVDGLNWVTPMGMTLRTIALTLNEMNIKPSEVFRGKILFKCPAEGEALIELDAQDFGNFLVHPLLTTADLPSGKFDFRREGTALD+ERGRATFTG WQGQPVVMEACQPDR
Sbjct:    1 MATEVTRTAGNRPGFSQVVTLAWLVGLLQAAEAFSFTASSSVGALRNVAVSSAPFQRKWRRRRSLNRGSGGVSSLKAIGVTSSVIESVAKGILNLALANPRQATVECTVNSSAMNLVRGNLEQAKVDGLNWVTPMGMTLRTIALTLNEMNIKPSEVFRGKILFKCPAEGEALIELDAQDFGNFLVHPLLTTADLPSGKFDFRREGTALDVERGRATFTGSWQGQPVVMEACQPDR 235
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BLAST of mRNA_E_fasciculatus_S2_contig962.17631.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWQ0_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.260e-19
Identity = 46/142 (32.39%), Postives = 78/142 (54.93%), Query Frame = 1 
Query:  277 LNLALANPRQATVECTVNSSAMNLVRGNLEQAKVDGLNWVTPMGMTLRTIALTLNEMNIKPSEVFRGKILF--KCPAEGEALIELDAQDFGNFLVHPLLTTADLPSGKFDFRREGTALDIERGRATFTGIWQGQPVVMEACQ 696
            + L L N R+  V C+V+S A++L++G L  A V G  W + +G+T R+I + +  + +    +FR ++L   + P  G A++   A+DFGNFL HPL+    +    F F R+G  +D  +    F G+W  + + +E  Q
Sbjct:    1 MRLVLRNGRETHVSCSVDSDALDLLQGRLRGASVRGRGWASRLGLTARSIDVDVGIVRLDVGALFRHRVLQFEQPPPSGNAIVVFSAEDFGNFLAHPLIRRTVVAGRSFVFDRQGVVVDPRKRTVAFGGVWGAEKLRIELSQ 142
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BLAST of mRNA_E_fasciculatus_S2_contig962.17631.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAU9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.200e-16
Identity = 56/150 (37.33%), Postives = 81/150 (54.00%), Query Frame = 1 
Query:  235 GVTSSVIESVAKGILNLALANPRQATVECTVNS-SAMNLVRGNLEQAKVDGLNWVTPMGMTLRTIALTLNEMNIK-PSEVFRGKILFKCPAEGEALIELDAQDFGNFLVHPLLTTADLPSGK---FDFRREGTALDIERGRATFTGIWQG 669
            GVTSS+I  +A  I+ L L   + + VEC V   SA  L++G +    V G  W +P+G+T R I  T+ + ++   S V + K+    PA+GEA+I L A+DFGNF+ HPL+    +P        F +EG  +D E G   F G   G
Sbjct:  124 GVTSSLISQLA--IVALQLRLKQNSGVECNVQGKSADLLLKGKVGPVTVRGKGWGSPLGLTCRAIEATVGQCDLDLGSIVSKRKLRLTVPAKGEAMIALTAEDFGNFITHPLMKAPAVPGSAEKGVQFCKEGVVVDPETGSVIFMGTTHG 271
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BLAST of mRNA_E_fasciculatus_S2_contig962.17631.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VV08_TETOB)

HSP 1 Score: 68.9 bits (167), Expect = 3.900e-10
Identity = 45/153 (29.41%), Postives = 75/153 (49.02%), Query Frame = 1 
Query:  238 VTSSVIESVAKGILNLALANPRQATVECTVNSSAMNLVRGNLEQAKVDGLNWVTPMGMTLRTIALTLNEMNIKPSEV-FRGKILFKCPAEGEALIELDAQDFGNFLVHPLLTTAD---LPSGKFDFRREGTALDIE-----RGRATFTGIWQG 669
            +T+ ++E+V    L   L   R   V+ +++    +L+ G +   K+ G  W +P+ +T + +  T+ E ++ PS V F+ +IL      G A +  +A DFGNFLVHPL+T A    +    F F +    +         G   FTG W+G
Sbjct:   58 LTADILENVTCLALRARLKECR--AVKTSISCDTWSLLAGRVNGVKIHGEGWRSPLNLTAQVLEATVGEASLDPSAVLFKQQILLTNVPVGTARVMFNAADFGNFLVHPLMTEAAKEAVQGHAFAFDQASVRIQPPSAVPPEGLVEFTGTWRG 208
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BLAST of mRNA_E_fasciculatus_S2_contig962.17631.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YEF7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.910e-7
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  412 TLRTIALTLNEMNIKPSEVFRGKILFKCPAEGEALIELDAQDFGNFLVHPLLTTADLPSGKFD--FRREGTALDIERGRATFTGIW 663
            T+ T AL +N++      V + K+L   PA G+A+I LDA DFGNF+ HPLL    + S + +  F ++  ++D + G  TF G++
Sbjct:    1 TVDTCALDMNKI------VSKQKLLLTTPANGKAMISLDAVDFGNFITHPLLKPPAVGSSEQEITFLKDNISVDAKTGAVTFYGMY 80
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig962.17631.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized6.480e-15194.47protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA1... [more]
Uncharacterized1.260e-1932.39protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWQ0... [more]
Hypothetical1.200e-1637.33protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Uncharacterized3.900e-1029.41protein n=1 Tax=Tetradesmus obliquus TaxID=3088 Re... [more]
Hypothetical1.910e-737.21protein (Fragment) n=1 Tax=Grammatophora oceanica ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig962contigE_fasciculatus_S2_contig962:114..2472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score94.4
Seed ortholog evalue7.8e-17
Seed eggNOG ortholog2880.D7FWQ0
Model size705
Hectar predicted targeting categorychloroplast
Exons3
EggNOG OGs2E7A0@1,2SDWV@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_006920.1
Cds size705
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.270879-CDS-E_fasciculatus_S2_contig962:113..3271696842608.270879-CDS-E_fasciculatus_S2_contig962:113..327Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig962 114..327 -
1696842608.2846987-CDS-E_fasciculatus_S2_contig962:777..8851696842608.2846987-CDS-E_fasciculatus_S2_contig962:777..885Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig962 778..885 -
1696842608.296077-CDS-E_fasciculatus_S2_contig962:2089..24721696842608.296077-CDS-E_fasciculatus_S2_contig962:2089..2472Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig962 2090..2472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig962.17631.1prot_E_fasciculatus_S2_contig962.17631.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig962 114..2472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig962.17631.1

>prot_E_fasciculatus_S2_contig962.17631.1 ID=prot_E_fasciculatus_S2_contig962.17631.1|Name=mRNA_E_fasciculatus_S2_contig962.17631.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=235bp
MATEMTRTAGKRPGFSQAVTLAWLVGLLQAAKAFSFTACPSVGALRNVAT
SSAPFQRKLSRRRSLNRDPGGVSSLKAIGVTSSVIESVAKGILNLALANP
RQATVECTVNSSAMNLVRGNLEQAKVDGLNWVTPMGMTLRTIALTLNEMN
IKPSEVFRGKILFKCPAEGEALIELDAQDFGNFLVHPLLTTADLPSGKFD
FRREGTALDIERGRATFTGIWQGQPVVMEACQPDR
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mRNA from alignment at E_fasciculatus_S2_contig962:114..2472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig962.17631.1 ID=mRNA_E_fasciculatus_S2_contig962.17631.1|Name=mRNA_E_fasciculatus_S2_contig962.17631.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2359bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig962:114..2472- (Ectocarpus fasciculatus EfasUO2)
ATGGCGACGGAAATGACTCGGACTGCTGGGAAAAGGCCCGGTTTCTCGCA
AGCGGTCACGCTGGCTTGGCTGGTGGGGCTTCTCCAGGCGGCGAAAGCTT
TCTCATTCACTGCGTGTCCTTCTGTCGGAGCTCTTCGAAATGTGGCGACA
TCATCTGCCCCATTCCAGCGGAAGTTGAGCCGCAGAAGATCTCTCAACAG
GGACCCGGGTGGGGTGTCATCTCTCAAGGCGATTGGTGTGACCTCGTCGG
TGATTGAAAGCGTCGCCAAGGGTATCTTGAATCTGGCGCTCGCCAACCCC
AGGCAGGCGACCGTGGAATGTACGGTCAACAGCTCGGCGATGAATCTCGT
TCGAGGGAACTTGGAGCAGGCCAAGGTGGATGGGTGAGTGTTTCCGCTGC
TGTGTCTTCTCGTGGTCGCTAGGCATGTATCTATGCAAGCATAAAATAAG
TGTACGCAGCAGACGGAAAACTACGTAAGACTTTGCATCACAGGACATCA
TTACTACAAGTACAACCAGAGCTTCCAGTAAATTTAACCGAAAAACATGC
CACCGGTAGATATGCTATGTTGTAGATACACGTACGTACTACAGCTGGAG
AGTACTCGATAAACTCATGTCGTCAATGATGGAGGATGTCGCGCACGGGA
TTCTCCTGGGGATATGCTATGTATGGTGGTGCACGGTCTGACTTCTGCTG
TATCTGCACACCGTGTATCAGCAGATGTGTGTGGGTGTTTGCGTCCATCT
ACTGTGATCGCCAGTTTATCTCTCGGTATTGTTGACCCATCAGCCGAGAG
TTTTTTATATTGTTCTCCACCTTCCCCTCTGCTATGCTGGCCTTCAACTT
TTCACACGAAAATGCTTCAGGAGTCTCTTTCCTGTGGTTTCTCGCGAGTG
TAGTACCGAGTTCCATACACAAGATAACAACCCTCAAGAGATACCACCCG
CCCACAGAATACAAATACTTTTTTTATACGCTCACAACGAGCCCAACGTA
AAATACTCTCAGATCACCGCAGATACCACCCCCCACCACAAACGGCCACA
AATACCATACTCGGGGTGAACAATATGTTGAAACGCCAAATATGCTATTA
TAAACTCCACTCCATCTCTGTATTGCTAGTTTGCAGTCCAAGATTAAAAC
CCGCAATTTTGCCAGCATGCTGCTGTCGCCACAACCATGCAACAGATGTT
GCACTTGACCGAATAGCAAGCTCAGGATTGTGTCTCGTGCTCTGTGTGGG
CGGATTCTTTCCGGCTGGTGTGTGTAGCCCAAGAATACAAATAGTGCCTT
TGTACGGGGACTGCTTTGCCGTTTTTTGTTACTGCTGCAGTGGTATGATG
CTTTCAGCGCGTTACCGCTGCATACACGCCACGTGCAACCAATTTTTTCT
GGCGAAATGCTCATGTGTGAAGGTAAAGGCGTATGGAGGCATGCAGTATC
CAGATAGGAGGAGGCCAAGCTGTTCTTGGCGCACCAGGCTAGATGATATG
ATACGGCTTCCGGTTGTACAGTGTTCTGACCTGTCGGCCGCCTCCCCCTC
CCGGCACTTGGACCGCACTAACATTCTGCTCGCGCAGGTTGAACTGGGTG
ACGCCCATGGGGATGACGCTGCGCACAATCGCGCTCACCCTGAACGAAAT
GAACATCAAGCCGTCTGAGGTGTTCCGCGGAAAGATCTTGTTCAAGTGAG
TCGCCTTGAAGAACGTACCCTGTCATTTTTCCTGATGGTGTTTCTCCTAC
TGAAATCGGCAAAAGCTGTACACGGACCGAACCATATGGCTTACCAGATT
GCGCCCTTGCAGTGGCATTTGGAATACTTTTGCTCTATTAGATATAGCAA
GGAGTTCAGAGGCGTTTTCGTGCGGCATTGTTTTTAACAGCGAACCCAGT
GCAACATTCCATGGGTAAGTTTATGGTCATACATTCGAAGGTCGGAATCA
AAGAGAAGGAGCTATTTTGCGATTGGTCAGAGACTACACCCAGAGAGTTG
CCAATATCCCCGTTGGCGACGCACGGGGCAAGAATCTTGGCAGCAGACCG
GCTGAGCTCACTGGTGCGGCCTTGCTTTCCCCCGTCCAGCCCACACCGCC
TCCGCCCGCGTGTTGGCCCCAACTTCTCGCCGAACCAACAATAAGGTGCC
CAGCTGAGGGCGAGGCCCTGATCGAGCTAGACGCCCAAGACTTCGGCAAC
TTCTTGGTGCACCCTCTGCTGACCACGGCGGATCTTCCCAGCGGAAAGTT
CGATTTCCGGCGGGAAGGAACGGCCCTCGACATCGAACGCGGCCGCGCGA
CCTTCACCGGAATTTGGCAAGGGCAGCCGGTAGTCATGGAGGCGTGCCAG
CCGGACAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig962:114..2472-

>mRNA_E_fasciculatus_S2_contig962.17631.1 ID=mRNA_E_fasciculatus_S2_contig962.17631.1|Name=mRNA_E_fasciculatus_S2_contig962.17631.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=705bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig962:114..2472- (Ectocarpus fasciculatus EfasUO2)
ATGGCGACGGAAATGACTCGGACTGCTGGGAAAAGGCCCGGTTTCTCGCA
AGCGGTCACGCTGGCTTGGCTGGTGGGGCTTCTCCAGGCGGCGAAAGCTT
TCTCATTCACTGCGTGTCCTTCTGTCGGAGCTCTTCGAAATGTGGCGACA
TCATCTGCCCCATTCCAGCGGAAGTTGAGCCGCAGAAGATCTCTCAACAG
GGACCCGGGTGGGGTGTCATCTCTCAAGGCGATTGGTGTGACCTCGTCGG
TGATTGAAAGCGTCGCCAAGGGTATCTTGAATCTGGCGCTCGCCAACCCC
AGGCAGGCGACCGTGGAATGTACGGTCAACAGCTCGGCGATGAATCTCGT
TCGAGGGAACTTGGAGCAGGCCAAGGTGGATGGGTTGAACTGGGTGACGC
CCATGGGGATGACGCTGCGCACAATCGCGCTCACCCTGAACGAAATGAAC
ATCAAGCCGTCTGAGGTGTTCCGCGGAAAGATCTTGTTCAAGTGCCCAGC
TGAGGGCGAGGCCCTGATCGAGCTAGACGCCCAAGACTTCGGCAACTTCT
TGGTGCACCCTCTGCTGACCACGGCGGATCTTCCCAGCGGAAAGTTCGAT
TTCCGGCGGGAAGGAACGGCCCTCGACATCGAACGCGGCCGCGCGACCTT
CACCGGAATTTGGCAAGGGCAGCCGGTAGTCATGGAGGCGTGCCAGCCGG
ACAGG
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