mRNA_E_fasciculatus_S2_contig9577.17596.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9577.17596.1
Unique NamemRNA_E_fasciculatus_S2_contig9577.17596.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9577.17596.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9577contigE_fasciculatus_S2_contig9577:93..851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size759
Hectar predicted targeting categorymitochondrion
Exons1
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.3419743-UTR-E_fasciculatus_S2_contig9577:92..1831696842604.3419743-UTR-E_fasciculatus_S2_contig9577:92..183Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9577 93..183 +
1696842604.3659067-UTR-E_fasciculatus_S2_contig9577:657..8511696842604.3659067-UTR-E_fasciculatus_S2_contig9577:657..851Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9577 658..851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.3542993-CDS-E_fasciculatus_S2_contig9577:183..6571696842604.3542993-CDS-E_fasciculatus_S2_contig9577:183..657Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9577 184..657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9577.17596.1prot_E_fasciculatus_S2_contig9577.17596.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9577 184..657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9577.17596.1

>prot_E_fasciculatus_S2_contig9577.17596.1 ID=prot_E_fasciculatus_S2_contig9577.17596.1|Name=mRNA_E_fasciculatus_S2_contig9577.17596.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=158bp
MKKMAPLSMRSTNHRLAAQPSTLSIISKSTQNHELSAMSVLGTKHFGSTH
SFNGYQRIVLPPRKKSHLTVVGIKGTTCRDTGTNTNTSPIKTVPYHIIYP
GKNGPHATESNDKRRCIDGRKSTSIDLMSISPCETCGMRKYGDNIRVWVR
FTSQRMQ*
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mRNA from alignment at E_fasciculatus_S2_contig9577:93..851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9577.17596.1 ID=mRNA_E_fasciculatus_S2_contig9577.17596.1|Name=mRNA_E_fasciculatus_S2_contig9577.17596.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=759bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9577:93..851+ (Ectocarpus fasciculatus EfasUO2)
TGTAGCTGAGTTGAATCTGGAGGTTGAGACCCGATCCAGGCGATTCAGAA
AAATAAATCCTAGATTGGTGCGGGCAGTCAACTCTGGGTAGATGAAGAAA
ATGGCGCCATTATCAATGCGATCGACCAATCACCGTCTCGCAGCACAGCC
GTCAACACTATCTATCATCAGCAAAAGCACGCAGAATCATGAACTCAGCG
CCATGAGCGTTTTAGGTACGAAGCATTTCGGTAGCACGCATTCATTCAAC
GGATACCAGCGCATCGTACTCCCTCCCAGAAAAAAAAGCCATCTTACAGT
GGTCGGGATAAAGGGAACAACATGCCGCGATACGGGCACCAACACCAACA
CTTCACCAATAAAAACCGTACCGTATCATATTATATACCCCGGAAAGAAC
GGTCCGCATGCAACAGAATCAAATGATAAACGTCGTTGCATCGATGGACG
AAAAAGCACAAGCATCGACCTCATGAGCATCAGCCCCTGTGAAACATGTG
GAATGCGTAAATATGGCGACAACATTCGTGTTTGGGTCCGCTTCACTAGT
CAACGGATGCAATAGCCCCTCGGTTCTACAACGTGCAGTCACAAGAACAT
GCAAAGGGGTACCTACCTGAACAATTCTCCTGACCGGGCCACTCTACGAA
GAAAACACACTATTAATACGGAACAAAAAACACAAACGAAAACAGCACAC
GTGTCAGTGTCCAGTGGCGGTCTACTCGGCATGATTGTCACTGCCACTGC
CACTGCCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9577:93..851+

>mRNA_E_fasciculatus_S2_contig9577.17596.1 ID=mRNA_E_fasciculatus_S2_contig9577.17596.1|Name=mRNA_E_fasciculatus_S2_contig9577.17596.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=474bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9577:93..851+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGAAAATGGCGCCATTATCAATGCGATCGACCAATCACCGTCTCGC
AGCACAGCCGTCAACACTATCTATCATCAGCAAAAGCACGCAGAATCATG
AACTCAGCGCCATGAGCGTTTTAGGTACGAAGCATTTCGGTAGCACGCAT
TCATTCAACGGATACCAGCGCATCGTACTCCCTCCCAGAAAAAAAAGCCA
TCTTACAGTGGTCGGGATAAAGGGAACAACATGCCGCGATACGGGCACCA
ACACCAACACTTCACCAATAAAAACCGTACCGTATCATATTATATACCCC
GGAAAGAACGGTCCGCATGCAACAGAATCAAATGATAAACGTCGTTGCAT
CGATGGACGAAAAAGCACAAGCATCGACCTCATGAGCATCAGCCCCTGTG
AAACATGTGGAATGCGTAAATATGGCGACAACATTCGTGTTTGGGTCCGC
TTCACTAGTCAACGGATGCAATAG
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