mRNA_E_fasciculatus_S2_contig9565.17579.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9565.17579.1
Unique NamemRNA_E_fasciculatus_S2_contig9565.17579.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17579.1 vs.
Match: Lipase_3 (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.240e-18
Identity = 73/225 (32.44%), Postives = 106/225 (47.11%), Query Frame = 3 
Query:  393 AAYEPTLESLRARVEEAGAELLQTWAARNGTPGYWAFTARIRTATGGSRWMLPWQRPSSIFVLVFRGTLITLKEFLDYVRM---ERYRPLFGDAGDG--EVYDLWIEILEQIWDSPADDERLSNDALTMRQILWKQFNENNGVWISGHSKGGALATTCAARLVLG-------------RVRDDSRDKLR-------QLSVLTFNAPKALCERLATDYERSIRRLG 992
            A  EPTLE L +   + G  ++Q W A  G  G+ A  AR                   + ++ FR T I  +E+L+Y +    +R  P  G+A     +V+ +W   L+++W  P D      D L  R ++W+Q N  N VW++GHSKGGA+ATT A+RL+LG              VR    D L        +LSV T+NAP A    LA  Y+  +  +G
Sbjct:   22 AVKEPTLEGLESHAAKHGLTIVQAWRAPRGE-GFKAAAARFFVDA------------EDVLIVAFRAT-IGNEEWLEYPQKYFKQRLIPHDGEAPGTNLKVFGVWSLTLDEVWKVPGDKPDGPKDNL--RGLIWRQLNAGNRVWLTGHSKGGAVATTAASRLLLGDSSVGGKEEAADPAVRRPEPDMLSLRGGPLSRLSVFTYNAPMAFSIPLADLYDARMAEIG 230
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17579.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 8.160e-16
Identity = 75/230 (32.61%), Postives = 107/230 (46.52%), Query Frame = 3 
Query:  393 AAYEPTLESLRARVEEAGAELLQTWAARNGTPGYWAFTARIRTATGGSRWMLPWQRPSSIFVLVFRGTLITLKEFLDYVRM---ERYRPLFGDAGDG--EVYDLWIEILEQIWDSPADDERLSNDALTMRQILWKQFNENNGVWISGHSKGGALATTCAARLVLG-------------RVRDDSRDKLR-------QLSVLTFNAPKALCERLATDYERSIRRLGVTHRR 1007
            A  E TLE L +   + G  ++Q W A  G  G+ A  AR                 + + ++ FR T I   E+L+Y +    +R  P  G+A     +V+ +W   L+++W  P D      D L  R ++W+Q N  N VW++GHSKGGA+ATT A+RL+LG              VR    D L        +LSV T+NAP A    L     RS+RR    +RR
Sbjct:   22 AVKETTLEGLESHAAKHGLTIVQAWRAPRGE-GFKAAAARFVVDA------------ADVLIVAFRAT-IGNDEWLEYPQKYFKQRLIPHDGEAPGTNLKVFGVWSLTLDEVWKVPGDKPDGPKDNL--RGLIWRQLNAGNRVWLTGHSKGGAVATTAASRLLLGDSSVGGKEEAADPAVRRPEPDMLSLRGGPLSRLSVFTYNAPMAFFHTLG----RSLRRQDGRNRR 231
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17579.1 vs.
Match: lipase (family protein n=1 Tax=Streptomyces sp. FH025 TaxID=2815937 RepID=UPI001FAF22DB)

HSP 1 Score: 60.1 bits (144), Expect = 2.420e-6
Identity = 52/166 (31.33%), Postives = 76/166 (45.78%), Query Frame = 3 
Query:  570 IFVLVFRGTLITLKEFLDYVRMERYRPLFGDAGDGEVYDLWIEILEQIWDSPADDERLSNDALTMRQILWKQFNENNGVWISGHSKGGALATTCAARLVLGRVRDDSRDKLRQLSVLTFNAPKALCERLATDYERSIRRLGVTHRRLFNEADRVRDAPPFAELRHV 1067
            + V+ FRGT    KE  D++      P  G  G G V+  + + LE ++               +R+ L +  + +  VW++GHS GGALA   AARLVL    +D R  L    V TF  P+     L+T Y  +++  G ++R   N  D V   PP     HV
Sbjct:   53 MIVMAFRGT--EPKEIRDWLSDSSTPPWPGPGGTGFVHYGFAQALESVFPD-------------IRKTLTELRDNDQTVWLTGHSLGGALAMLTAARLVL----EDPR--LAADGVYTFGQPRTCDRLLSTAYNSALK--GRSYR-FVNNNDIVPQLPPEPVFSHV 194
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17579.1 vs.
Match: Lipase (family protein n=1 Tax=Streptomyces sp. FH025 TaxID=2815937 RepID=UPI001A9D070F)

HSP 1 Score: 60.1 bits (144), Expect = 5.000e-6
Identity = 52/166 (31.33%), Postives = 76/166 (45.78%), Query Frame = 3 
Query:  570 IFVLVFRGTLITLKEFLDYVRMERYRPLFGDAGDGEVYDLWIEILEQIWDSPADDERLSNDALTMRQILWKQFNENNGVWISGHSKGGALATTCAARLVLGRVRDDSRDKLRQLSVLTFNAPKALCERLATDYERSIRRLGVTHRRLFNEADRVRDAPPFAELRHV 1067
            + V+ FRGT    KE  D++      P  G  G G V+  + + LE ++               +R+ L +  + +  VW++GHS GGALA   AARLVL    +D R  L    V TF  P+     L+T Y  +++  G ++R   N  D V   PP     HV
Sbjct:  129 MIVMAFRGT--EPKEIRDWLSDSSTPPWPGPGGTGFVHYGFAQALESVFPD-------------IRKTLTELRDNDQTVWLTGHSLGGALAMLTAARLVL----EDPR--LAADGVYTFGQPRTCDRLLSTAYNSALK--GRSYR-FVNNNDIVPQLPPEPVFSHV 270
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17579.1 vs.
Match: Lipase (n=1 Tax=Kitasatospora aureofaciens TaxID=1894 RepID=A0A1E7MVB0_KITAU)

HSP 1 Score: 57.4 bits (137), Expect = 2.670e-5
Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = 3 
Query:  570 IFVLVFRGTLITLKEFLDYVRMERYRPLFGDAGDGEVYDLWIEILEQIWDSPADDERLSNDALTMRQILWKQFNENNGVWISGHSKGGALATTCAARLVLGRVRDDSRDKLRQLSVLTFNAPKALCERLATD-YERSIRRLGVTHRRLFNEADRVRDAPPFAELRHV 1067
            + V+ FRGT    +E  D++      P  G AG G V+  + E LE ++           D L   + L +  + +  VWI+GHS GGALA   AARL L    +D R  L    V TF  P+  C+RL T  Y ++++  G ++R   N  D V   PP     H+
Sbjct:   74 MIVVAFRGT--EPREIRDWLTDSTTPPWPGPAGTGYVHYGFAEALESVFP----------DVL---KTLAELRDNDQTVWITGHSLGGALAMLAAARLSL----EDPR--LTADGVYTFGQPRT-CDRLLTAAYNKALK--GRSYR-FVNNHDVVPQLPPEPAFTHI 215
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17579.1 vs.
Match: Lipase (family protein n=1 Tax=Streptomyces hainanensis TaxID=402648 RepID=A0A4R4TBD0_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 6.410e-5
Identity = 52/167 (31.14%), Postives = 69/167 (41.32%), Query Frame = 3 
Query:  570 IFVLVFRGTLITLKEFLDYVRMERYRPLFGDAGDGEVYDLWIEILEQIWDSPADDERLSNDALTMRQILWKQFNENNG-VWISGHSKGGALATTCAARLVLGRVRDDSRDKLRQLSVLTFNAPKALCERLATDYERSIRRLGVTHRRLFNEADRVRDAPPFAELRHV 1067
            + +  FRGT     +  D++      P  G AG G V+  + E LE IW    D                 +F +N+  VW +GHS GGALA    ARL L    +D R  LR   V T+  P+A    LA  +++     G    R  N  D V   PP     HV
Sbjct:   74 MIITAFRGT--EPSQIRDWLTDATTPPWAGPAGIGYVHYGFGEALESIWPDVKD--------------TLARFRDNDQTVWFTGHSLGGALAMLAGARLQL----EDPR--LRADGVYTYGQPRACDRMLADAFDQGF---GQRAFRFVNNNDIVPQLPPEPAYSHV 215
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9565.17579.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Lipase_36.240e-1832.44domain-containing protein (Fragment) n=1 Tax=Ectoc... [more]
Uncharacterized8.160e-1632.61protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
lipase2.420e-631.33family protein n=1 Tax=Streptomyces sp. FH025 TaxI... [more]
Lipase5.000e-631.33family protein n=1 Tax=Streptomyces sp. FH025 TaxI... [more]
Lipase2.670e-532.93n=1 Tax=Kitasatospora aureofaciens TaxID=1894 RepI... [more]
Lipase6.410e-531.14family protein n=1 Tax=Streptomyces hainanensis Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9565contigE_fasciculatus_S2_contig9565:3020..5252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2033
Hectar predicted targeting categoryother localisation
Exons2
Cds size990
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.0677109-UTR-E_fasciculatus_S2_contig9565:3019..37241696842603.0677109-UTR-E_fasciculatus_S2_contig9565:3019..3724Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9565 3020..3724 -
1696842603.1052835-UTR-E_fasciculatus_S2_contig9565:4914..52521696842603.1052835-UTR-E_fasciculatus_S2_contig9565:4914..5252Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9565 4915..5252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.0784853-CDS-E_fasciculatus_S2_contig9565:3724..43421696842603.0784853-CDS-E_fasciculatus_S2_contig9565:3724..4342Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9565 3725..4342 -
1696842603.089102-CDS-E_fasciculatus_S2_contig9565:4542..49141696842603.089102-CDS-E_fasciculatus_S2_contig9565:4542..4914Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9565 4543..4914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9565.17579.1prot_E_fasciculatus_S2_contig9565.17579.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9565 3725..4914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9565.17579.1

>prot_E_fasciculatus_S2_contig9565.17579.1 ID=prot_E_fasciculatus_S2_contig9565.17579.1|Name=mRNA_E_fasciculatus_S2_contig9565.17579.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=330bp
MTMTADEQKRVCQSLSRRAAYEPTLESLRARVEEAGAELLQTWAARNGTP
GYWAFTARIRTATGGSRWMLPWQRPSSIFVLVFRGTLITLKEFLDYVRME
RYRPLFGDAGDGEVYDLWIEILEQIWDSPADDERLSNDALTMRQILWKQF
NENNGVWISGHSKGGALATTCAARLVLGRVRDDSRDKLRQLSVLTFNAPK
ALCERLATDYERSIRRLGVTHRRLFNEADRVRDAPPFAELRHVGCEEPHG
NNVEILRDLHPWERVAWGVAGVGVIVTGGFLVGAGTLAAGSVYFYAGANA
AFYGSGGAAIVGGIGMVGGAVRGGRRANA*
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mRNA from alignment at E_fasciculatus_S2_contig9565:3020..5252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9565.17579.1 ID=mRNA_E_fasciculatus_S2_contig9565.17579.1|Name=mRNA_E_fasciculatus_S2_contig9565.17579.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2233bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9565:3020..5252- (Ectocarpus fasciculatus EfasUO2)
CGTCAATGTTAGCTTCCGTGATCACGGAAATCACTCCGTCTGGTAGTTTA
GACGAGTACGGACATGTTGTGTAATCGGAAAGGTTTCTTAATTATTTTTT
TGCGAAGACGACGACAACAATCGGGGAGAACATTCCGGGTGCCCTCCGAG
CCGACCAAGACAATCATCATGTGACGATACGACACGAACCAATGAGATTA
CATGCATGTTACGCTGGTACGATTCAAACGATTCTACGTGGACTGCATCG
GTTGTCTTGCTGCCTCTCTCGTTGCGTCAGAATATGAACAAACCGCAAAC
GTTTCTCTACGTGCGCGGCCCGATCGAAGGTTTTAACTATGACCATGACT
GCGGACGAGCAGAAACGCGTGTGCCAGAGTCTGTCGAGGAGAGCAGCGTA
CGAGCCTACCCTGGAAAGCCTCCGGGCGAGGGTCGAGGAAGCCGGAGCGG
AGCTGCTTCAAACTTGGGCCGCGAGGAACGGCACGCCGGGGTATTGGGCA
TTCACCGCTCGGATTCGGACGGCAACGGGAGGTTCAAGGTGGATGCTCCC
CTGGCAAAGACCTAGCTCCATTTTCGTGCTGGTCTTCCGCGGGACGCTCA
TCACCTTGAAGGAATTTCTGGACTACGTCAGAATGGAGCGATACAGACCC
CTCTTCGGTGACGCGGGAGATGGGGAGGTTTATGATCTATGGATAGAGAT
CCTCGAGCAGGTGAGGCGACCGCACGCCCCAGTACTCACTACTGTAGGCG
GTGCTTCCGTCGTTCCCGCAGTCCAGTCGTAGACGCACGTATGTGTTGAA
ACAACAGTCCGTTTCATCGTGTAACACCGTTCTTTCCCTGCGGTATGCGG
ACTCATGACTTGCTTAAGAAACTCCCGTTTGCCGTGTCTGACGTCAACAC
CCACGGCCAGATATGGGACTCTCCGGCGGACGACGAACGTCTCTCGAACG
ACGCACTCACCATGAGGCAAATACTGTGGAAGCAGTTCAACGAAAACAAC
GGGGTGTGGATTTCCGGACACAGCAAGGGTGGGGCCCTCGCCACGACATG
CGCCGCACGCCTCGTGCTGGGGCGGGTGCGCGATGATTCTCGCGACAAGC
TGCGCCAGCTGTCTGTGTTAACCTTCAATGCTCCCAAGGCACTGTGCGAG
CGTTTGGCCACAGATTACGAGCGGAGTATCAGACGTCTGGGCGTCACCCA
CCGCCGCCTTTTCAACGAGGCCGACCGCGTCCGTGATGCGCCTCCTTTCG
CTGAGCTGCGCCACGTCGGGTGTGAGGAACCGCACGGAAACAACGTTGAA
ATCCTGCGAGATCTCCACCCGTGGGAGAGAGTAGCGTGGGGGGTGGCTGG
AGTTGGCGTAATCGTGACCGGTGGCTTTCTTGTGGGGGCTGGTACGCTCG
CCGCCGGCAGTGTCTATTTCTATGCCGGCGCCAATGCCGCGTTCTACGGA
TCGGGTGGGGCCGCGATTGTTGGCGGCATCGGTATGGTGGGTGGTGCTGT
ACGGGGAGGTAGGCGGGCCAACGCTTAGTATCGCGTTGCAGTAGCAGCTA
CGGGTAGCAATACGGGCCCTCATCGGCGGCACCTAGGCCTTGCTTCCTTG
ATTCTTCGCGCGCTCGGTATAAAACACTCGGTGGCGATCGAAAATGGAGG
GCTCACCCAGAGAAAAAGGGACAGGGTCCACCGTGATCGATCCCGTTTTC
TGATCGAATTAGGCCACGTTTATGGTAGGGTGAGGGATACCTGCTCCCTA
CTGTCCGGACCCGGGCGAGTGTATATACTGAAAAGCGGTTGTTTAGAGTG
CCACTTCGAATTGCACAGCCGATCGTCCGCTTGCGTTGTGTACTGAACGA
TTGCCAGCCATCAGCAATCGTACATGTATCGTGCAAAGCTTGCCTATAAA
TGGCGTTTTCAAGATCTGGACAAATCTTGTTACATGTCATACGAGAAGAC
AACGCTAATGTGGTTCCCCTCGAGAACACCGCTTTTCAGGAACACGTCCA
ACATTGGATGATGCTCTGTGGCACCCGGATAGTTTTCCGTATGCATTGTA
GGACCCTTGGTTTCCCTCGCAGGGACGCGGCGAAAACCATGTTTGTTTTG
CGTACTCGGTCCTTCGAATGGCGCCCCCTCGGCGGTGTCACCCGCTTCCC
ATTACTGCAGAAATTCGGCTTTGAAAATTTGTTGACCCTTCCCGGGAAAA
TCTAAATGAAGACCTTGCGGTGTATAAATGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9565:3020..5252-

>mRNA_E_fasciculatus_S2_contig9565.17579.1 ID=mRNA_E_fasciculatus_S2_contig9565.17579.1|Name=mRNA_E_fasciculatus_S2_contig9565.17579.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=990bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9565:3020..5252- (Ectocarpus fasciculatus EfasUO2)
ATGACCATGACTGCGGACGAGCAGAAACGCGTGTGCCAGAGTCTGTCGAG
GAGAGCAGCGTACGAGCCTACCCTGGAAAGCCTCCGGGCGAGGGTCGAGG
AAGCCGGAGCGGAGCTGCTTCAAACTTGGGCCGCGAGGAACGGCACGCCG
GGGTATTGGGCATTCACCGCTCGGATTCGGACGGCAACGGGAGGTTCAAG
GTGGATGCTCCCCTGGCAAAGACCTAGCTCCATTTTCGTGCTGGTCTTCC
GCGGGACGCTCATCACCTTGAAGGAATTTCTGGACTACGTCAGAATGGAG
CGATACAGACCCCTCTTCGGTGACGCGGGAGATGGGGAGGTTTATGATCT
ATGGATAGAGATCCTCGAGCAGATATGGGACTCTCCGGCGGACGACGAAC
GTCTCTCGAACGACGCACTCACCATGAGGCAAATACTGTGGAAGCAGTTC
AACGAAAACAACGGGGTGTGGATTTCCGGACACAGCAAGGGTGGGGCCCT
CGCCACGACATGCGCCGCACGCCTCGTGCTGGGGCGGGTGCGCGATGATT
CTCGCGACAAGCTGCGCCAGCTGTCTGTGTTAACCTTCAATGCTCCCAAG
GCACTGTGCGAGCGTTTGGCCACAGATTACGAGCGGAGTATCAGACGTCT
GGGCGTCACCCACCGCCGCCTTTTCAACGAGGCCGACCGCGTCCGTGATG
CGCCTCCTTTCGCTGAGCTGCGCCACGTCGGGTGTGAGGAACCGCACGGA
AACAACGTTGAAATCCTGCGAGATCTCCACCCGTGGGAGAGAGTAGCGTG
GGGGGTGGCTGGAGTTGGCGTAATCGTGACCGGTGGCTTTCTTGTGGGGG
CTGGTACGCTCGCCGCCGGCAGTGTCTATTTCTATGCCGGCGCCAATGCC
GCGTTCTACGGATCGGGTGGGGCCGCGATTGTTGGCGGCATCGGTATGGT
GGGTGGTGCTGTACGGGGAGGTAGGCGGGCCAACGCTTAG
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