mRNA_E_fasciculatus_S2_contig9562.17576.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9562.17576.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE) HSP 1 Score: 474 bits (1219), Expect = 8.570e-149 Identity = 433/637 (67.97%), Postives = 456/637 (71.59%), Query Frame = 1
Query: 1 NQQALSYKHFRAAAVAHNHYKDEGDTSPDVSPPSGKNASAAPPAFPADDRERGLENAAAATAGVGTLAAKNKPSRGASRPGARREKSADARGRAAGPPDDFDDVELPGAARYQVPSDASWPSDPRVGVSVSGKKNPRWSGSRELNAYLRRTGYEEIDNNEGGDGGKQRGRQXXXXXXXXXXRAGGSSSVVEAIKRTGSMLSEK---RNSNKFKRMEEGGGRDDR-----------VGMEEIPLGDLPVSPSPPPAAQRSMIQSKPRXXXXXXXXSPHRRRGSKXXXXXXXXXXXXXXXGRTDGSGAAPIDGSLGVRRESSSKSSRLSGRGRPSRVAPTDEDSGPDEFGACDPSLLDRVAGAQPPEPRSRNVPKDVPKSAPRSGAERSGRGRDDKSRGRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERSRALKEEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRM----AAKALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RAKGGTSEREPSANRGDGDRRRDKKKADGSPAVS--KQLQPPSYKESRGGRERGRQRTAADGATAGGGARSRSTPAGDGGVVPEPRRETEAE 1845
NQ ALSYKHF AAAV N+YK+EGDTSPDVSPPSGK+AS PPAFPADDRERGL+ AAA AGV TLAAK KPSR A RP ARRE+SADARGRAA PPDDFD ELPGAA YQ PSDASWPSDPRVGVSVSG KNPRWSGSRELNAYLRRTGYEE+D EGG XXXXXXXXXX ++VV+AIK TGSMLSEK RNSNKF RMEEG D+ +G EEIPLGDLPVSPSPPPAAQRS I SKPR XXXXXXXSP +RRGSK G+T+GSG+APIDGSLGV ESSSKSSRLSGRGRPSRVAPTDEDSGPDEFG CDPSLLDRVAGA+PPEP +RNVPK+VP RSGAE S GRD KSRGR XXXX XXXAERSRALKEEQA XXXXXXX XXXX XXXXXXXXXXXXXXX AAKA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R+KG T+EREP ++R D DR RDK KQLQPPSYKES GGRERGRQR A +G T GAR RSTPAGDGGV PE RETEAE
Sbjct: 475 NQLALSYKHFGAAAVTQNNYKEEGDTSPDVSPPSGKDASVTPPAFPADDRERGLQTTAAA-AGVETLAAKKKPSRAAPRPTARRERSADARGRAAEPPDDFDG-ELPGAAAYQPPSDASWPSDPRVGVSVSGTKNPRWSGSRELNAYLRRTGYEEMDT-EGGX--------XXXXXXXXXXXXXXGNAVVQAIKTTGSMLSEKSKSRNSNKFARMEEGAEHDEAGYSLSMQAVETMGTEEIPLGDLPVSPSPPPAAQRSKILSKPRSXXXXXXXSPRKRRGSKLSSHRRGGGGSSGSSGKTNGSGSAPIDGSLGVPWESSSKSSRLSGRGRPSRVAPTDEDSGPDEFGTCDPSLLDRVAGAEPPEPLTRNVPKNVP----RSGAEPSEGGRD-KSRGR--GLDENGGGRXXXXSKAAGLPNAALEGERARPDKASRRQQEEEREXXXAERSRALKEEQAEXXXXXXXLKEEEERXXXXAXXXXXXXXXXXXXXXXXXXXRAAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGSSGRSKGNTAEREPCSSRRD-DRHRDKXXXXXXXXXXXXKQLQPPSYKES-GGRERGRQRRA-EGPT---GARGRSTPAGDGGV-PE-HRETEAE 1085
BLAST of mRNA_E_fasciculatus_S2_contig9562.17576.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G003_ECTSI) HSP 1 Score: 440 bits (1132), Expect = 1.240e-136 Identity = 447/661 (67.62%), Postives = 472/661 (71.41%), Query Frame = 1
Query: 1 NQQALSYKHFRAAAVAHNHYKDEGDTSPDVSPPSGKNASAAPPAFPADDRERGLENAAAAT----------AGVGTLAAKNKPSRGASRPGA------RREKSADARGRAAGPPDDFDDVELPGAARYQVPSDASWPSDPRVGVSVSGKKNPRWSGSRELNAYLRRTGYEEIDNNEGGDGGKQRGRQXXXXXXXXXXRAGG--SSSVVEAIKRTGSMLSEK---RNSNKFKRMEEGGGRD-----------DRVGMEEIPLGDLPVSPSPPPAAQRSMIQSKPRXXXXXXXXSPHRRRGSKXXXXXXXXXXXXXXXGRTDGSGAAPIDGSLGVRRESSSKSSRLSGRGRPSRVAPTDEDSGPDEFGACDPSLLDRVAGAQPPEPRSRNVPKDVPKSAPRSGAERSGRGRDDKSRGRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERS------------RALKEEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMAAKALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RAKGGTSEREPSANRGDGDRRRDKKKADGSPAVSKQLQPPSYKESRGGRERGRQRTAADGATAGGGARSRSTPAGDGGVVPEPRRETEAE 1845
NQ ALSYKHFRAAAV N YK++GDTSPDVSPPSGKNAS PPAFP DDRERGL+ AA AGV TLAAK KPSR A RP A RRE+SADARGRAA PPDDFDDVELPGAA YQ PSDASWPSDPRVGVSVSGKKNPRWSGSRELNAYLRRTGYEE+D EGG XXXXXXXXXX ++VV+AIK TGSMLSEK R ++F RMEEG D D +GM++IPLGDLPVSPSPPPAAQRS I SKPR XXXXXXX P +RRGSKXXXXXXXXXXXXX GRT+GSG+APIDGSLGV ESSSKSSRLSGRGRPSRVAPTDEDSGPD+FG CDPSLL+RVAGA+PPEP SRN PK+VP RSGAE SG GRD XXXXXXXXXXXXXX XXXXXXXXXXXX R+ RAL+E+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAKAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RAKG T+ REPS D R +QLQPPSYKES GGRERGRQR A A GARSRSTPA DGGV RETEAE
Sbjct: 377 NQLALSYKHFRAAAVTQNKYKEDGDTSPDVSPPSGKNASVTPPAFPTDDRERGLQTAATXXXXXXXXXXXXAGVETLAAKKKPSRAAPRPTAKSGKPARRERSADARGRAAEPPDDFDDVELPGAAAYQPPSDASWPSDPRVGVSVSGKKNPRWSGSRELNAYLRRTGYEEMDT-EGGXXXXXXXXXXXXXXXXXXXXXXXXXGNAVVQAIKTTGSMLSEKSKGRKGSQFARMEEGAENDEAGHPLWMQAVDTMGMKDIPLGDLPVSPSPPPAAQRSKILSKPRSXXXXXXXXPRKRRGSKXXXXXXXXXXXXXSSGRTNGSGSAPIDGSLGVPWESSSKSSRLSGRGRPSRVAPTDEDSGPDDFGTCDPSLLNRVAGAEPPEPLSRNAPKNVP----RSGAEPSGGGRDKSXXXXXXXXXXXXXXXXXXXAGLPEAALEGERARADKAXXXXXXXXXXXXKRAEGSRALKXXXXXXXXXXRALEEKXXRTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSVGSSGRAKGNTAAREPSXXXXDXRHRXXXXXXXXXXXXXRQLQPPSYKES-GGRERGRQRRAEGPA----GARSRSTPAADGGVPAT--RETEAE 1025 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9562.17576.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9562.17576.1 >prot_E_fasciculatus_S2_contig9562.17576.1 ID=prot_E_fasciculatus_S2_contig9562.17576.1|Name=mRNA_E_fasciculatus_S2_contig9562.17576.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=737bp NQQALSYKHFRAAAVAHNHYKDEGDTSPDVSPPSGKNASAAPPAFPADDRback to top mRNA from alignment at E_fasciculatus_S2_contig9562:3459..5804- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9562.17576.1 ID=mRNA_E_fasciculatus_S2_contig9562.17576.1|Name=mRNA_E_fasciculatus_S2_contig9562.17576.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2346bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9562:3459..5804- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9562:3459..5804- >mRNA_E_fasciculatus_S2_contig9562.17576.1 ID=mRNA_E_fasciculatus_S2_contig9562.17576.1|Name=mRNA_E_fasciculatus_S2_contig9562.17576.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2211bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9562:3459..5804- (Ectocarpus fasciculatus EfasUO2)back to top |