mRNA_E_fasciculatus_S2_contig9550.17566.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9550.17566.1
Unique NamemRNA_E_fasciculatus_S2_contig9550.17566.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4L7_ECTSI)

HSP 1 Score: 551 bits (1420), Expect = 4.680e-194
Identity = 251/266 (94.36%), Postives = 265/266 (99.62%), Query Frame = 1
Query:    1 QTGEPYPYMNKPNAMQLWFDQTEIQETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPNWTHWDLTNICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPIDHQMDNVCDIGIEPRDIESRDVRSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPMDIQESTYKV 798
            +TGEPYPYMNKPNAMQ+W DQTE++ETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPNWTHWDL+NICP+++LCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINN+AIENEKVDYELWDP+DHQMDNVCDIGIEPRDI+SR+VRSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPM+IQESTYK+
Sbjct:  243 ETGEPYPYMNKPNAMQIWLDQTEVEETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPNWTHWDLSNICPDDALCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNYAIENEKVDYELWDPVDHQMDNVCDIGIEPRDIKSRNVRSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPMNIQESTYKM 508          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD89_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.770e-41
Identity = 94/256 (36.72%), Postives = 128/256 (50.00%), Query Frame = 1
Query:    4 TGEPYPYMNKPNAMQLWFDQTEIQETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPN-WTHWDLTNICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPIDHQMDNVCDIGIEPRDIESRDVRSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPP 768
            TG  Y + NKP  +  W      +  I+ALIDPD  FL+PLT  L+    +V  D +  E L    G    KG PA Q +GL + W  ++   IC   S C   ++  A R + + PPY+ H DDW+RL   WV   PKVYE YP LLAE  AY+ AAA  ++ H+R+N+  + N     E W P+   + +VC   + P    S    +   LP FIH C  Y VG++ F+KR    +       CD   L  PP
Sbjct:  184 TGREYHFYNKPRGILHWLTHGRPEADIIALIDPDQFFLRPLTPDLAGVPNLVVTDPVKKETLPTRIG----KGAPAAQFYGLGDRWLRFNREYICGAGSPCLEATSRDAWRSFTVGPPYILHVDDWKRLARSWVDFVPKVYEEYPHLLAEMYAYSLAAAHEELPHFRVNHLMVSNVGSYGEGW-PLVDSLPSVCADALRP---SSNTSSAASMLPTFIHACQSYHVGRFRFSKRALPTDKFSS---CDAEFLHEPP 428          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM89_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.090e-39
Identity = 92/241 (38.17%), Postives = 132/241 (54.77%), Query Frame = 1
Query:    4 TGEPYPYMNKPNAMQLWFDQTEI---QETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLEN-GGWVRKGYPAGQRFGL-PNWTHWDLTNICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPIDH-QMDNVCDI-GIEPRDIESRDVRSFDRLPNFIHYCHMYRVGQWLFNKRR 705
            TG+ Y + NKP  M+ + +   I   +  I+ALIDPDF FL+P +      + V   D L +   + +    +V +G PAGQ++GL  +W  +D   IC   S C  TS   A+R+Y + PPY+ H +D+R+L P W   AP+VY  YP LLAE  AY  AAA L M H R+N++ + N  V  E W  +D   + + C   G +  ++     R    LP F+HYC  YRVG ++F KRR
Sbjct:  181 TGKSYHFYNKPRGMEHFLNDRSIDFERAPIIALIDPDFAFLRPFS------DRVAGPDALVIAPWRADELPAFVTEGTPAGQQYGLGTHWLTFDRRKICGAGSPCLETSRRDAERHYPIGPPYVLHHNDFRKLAPVWREFAPRVYAQYPDLLAEMYAYCMAAAHLRMPHARVNHWMLSNVHVGDEGWRHLDALALRDACPARGGKTPNVVDHATRFV--LPAFLHYCQNYRVGDFIFAKRR 413          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDZ4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.800e-39
Identity = 91/274 (33.21%), Postives = 134/274 (48.91%), Query Frame = 1
Query:   16 YPYMNKPNAMQLWFDQTEI---QETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGL-PNWT------HWDLTNICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPIDHQMDNVC----DIGIEPRDIESRDVRSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPMDIQESTYK 795
            Y + NKP  +Q W    E      TIV +IDPD I L+P+   +      +  +    E   +     V  G P  Q +GL   W       H++ T++C   S C  T+T+  ++++ + PPY+  +DD  +L+  W A  P+VYE YPSLLAE  AY+ AAA  D+ H+ ++N  + N   + E W  ID   DNVC    D  + P  +          +P+ +HYC  YR G+  F KRR +KE       CD PM+   P D+ +  YK
Sbjct:   73 YDFYNKPYGVQHWLVNAEPPVPSGTIVNIIDPDMIILRPMVPQIKGNPANIFMNRFKPETDFIPEK--VAHGMPVAQLYGLGAPWAQKAPHKHFNRTHVCGAGSPCLDTTTSFGEQHFSVGPPYMVEKDDLLKLVNSWTAMVPRVYEKYPSLLAEMYAYSMAAAHTDLPHFTLHNLMVSNVHAEDEGWPWIDQLEDNVCAKPVDGVLYPTKV----------MPSVLHYCQFYRAGEMGFQKRRIKKEL----FSCDQPMMLELPADLGKVNYK 330          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU90_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.630e-39
Identity = 91/266 (34.21%), Postives = 137/266 (51.50%), Query Frame = 1
Query:    1 QTGEPYPYMNKPNAMQLWFDQTE--IQETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPN-WTHWD----LTNICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVD-YELWDPIDHQMDNVCDIGIEPRDIESRDVRSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPMD 774
            +TGE + + NKPN M  +    +  + E +VAL+DPD IF+ PLT ++   + ++  DG + EG       WV +G P GQ +GL   WT WD    +T    E+S     ST  A   Y + PPY+ H  DW R+L  WVA +PKV++ +P +LAE   +  AAA + ++H       + +  +   E W  +D    +VCD    P  ++ R       LP  +HYC MYRVG +++ KR    ++ +    C +  LE PP D
Sbjct:  154 ETGERFMFYNKPNGMAHYLKSADYPVHEAVVALVDPDMIFMSPLTPFVGDADKMLWHDGDAGEGPD-----WVEEGSPVGQYYGLGGVWTTWDDLREITENLGEDSPARAVSTEEAISGYPVGPPYMMHPRDWARVLDLWVALSPKVHKGHPGILAEMYGFCIAAAHIGLRHRVAYGLMVSDAGMPGKEGWPLVDQMGTSVCD----PESVDHRR----GSLPPIVHYCQMYRVGTFMWGKRHRTHQTFFG---CHSDSLELPPPD 403          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA7_AURAN)

HSP 1 Score: 148 bits (373), Expect = 2.760e-38
Identity = 85/248 (34.27%), Postives = 125/248 (50.40%), Query Frame = 1
Query:    4 TGEPYPYMNKPNAMQLWFDQTEIQ---------ETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPN-WTHWDLTNICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPIDHQMDNVCDIGIEPRDIESRDVRSFDRLPNFIHYCHMYRVG----QWLFNKRR 705
            +G+ Y + NKP  ++ W    +           + +VALIDPDFIFL+PLT  +S    ++    +            V++G P GQ +GL + W  +DL  IC   S CA  ++  A RYY + PPY+AH+DD  ++   W    P+V+  YP LLAE  AY+ AAA L + H R++++ + N     E W  ID    + CD+ +  R     DV      P F+HYC  YR      + +F KRR
Sbjct:  103 SGKDYKFYNKPYGLRHWLGAGKGHWLARADLGDDAVVALIDPDFIFLRPLTADVSNASAILASAPVDAAAAAARFRR-VKRGQPVGQFYGLGDGWLKFDLGKICGAKSRCANVTSAEAWRYYSVGPPYIAHRDDLAKIADRWCEYVPRVFAQYPELLAEMYAYSMAAADLGLPHLRLDHYMVSNVNAYGEAWPWIDGAATSSCDVTLPQRLWPGHDV------PVFVHYCQGYRFPDAERELVFGKRR 343          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T637_9STRA)

HSP 1 Score: 147 bits (372), Expect = 7.810e-38
Identity = 88/269 (32.71%), Postives = 140/269 (52.04%), Query Frame = 1
Query:    4 TGEPYPYMNKPNAMQLWFDQTEI---QETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPN-WTHWDLTNICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPIDHQMDN-VCDIGIEPRDIESRDVRSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPMDIQESTYK 795
            +G+ Y + NKP  +Q W D       ++ IVAL+DPDF+F++PLT +    + V+    ++ +G  ++    VR+G+P  Q +G+ + WT + +  I  ++S  +  S + A RYY +  PY+AH  D R++   W    P+VYE YP LLAE  AY+ AAA L     R++++ + N +   E W  +D   D  VC      +  E          P F+HYC  YRV  W F+KRR           C +P+   PP D++++ +K
Sbjct:  162 SGKSYDFYNKPYGLQHWLDSKAAPKHKDAIVALLDPDFLFMRPLT-YKVKQDRVLYSPPVT-DGDLIDE---VREGHPVAQYYGIGSQWTKFKVEYIAGKDSPASKVSISDASRYYSVGAPYIAHVKDMRKIAESWANFVPRVYEEYPHLLAEMYAYSIAAAHLXXXXXRLDHYMVSNTQAAGEGWPFVDRLTDKYVCSAEAPDQGQEQ---------PVFLHYCQFYRVEHWGFHKRRVATNL----FTCKSPLFIMPPEDLEDTHWK 412          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPB4_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.540e-37
Identity = 91/276 (32.97%), Postives = 140/276 (50.72%), Query Frame = 1
Query:    4 TGEPYPYMNKPNAMQLWFDQTEIQ---ETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGL-PNWTH-----WDLTNICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPIDHQMDNVCDIGIEPRDIESRDVRSFDRLP--NFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPMDIQESTYKV 798
            T + Y + NKP  M+ W +         TI+AL+DPD IF++PL   +    +++   G+  E    E    +  G+P  Q +GL   WT+     ++   IC E S C   +    + +Y + PPY+AH+ D+ R++  W    P+VYE YP LLAE  AY+ AAA   + H +++N+ + N +   E W  +D  +  VC   + P      D   +  LP    IHYC  YRVG+  F KRR      ++   C++PM+  PP D+  +TYKV
Sbjct:  159 TNKKYDFYNKPWGMKHWLENAVPAIPPNTIIALLDPDMIFVRPLGPQIRGDISLLTDRGIKDE----EIVDVIGLGHPVSQTYGLGAPWTNDNHKKFNRGKICGEGSPCLQVNMRYGELHYSVGPPYIAHRSDFIRIVESWTTFVPRVYEDYPYLLAEMYAYSMAAAHEKLPHVQVDNYMVSNTQAGGESWPHVD-SLPQVC---VPP----DEDGHFYAGLPMTTVIHYCQNYRVGELGFQKRRV----PHNIFSCESPMMVEPPTDLAAATYKV 418          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B353_9STRA)

HSP 1 Score: 137 bits (346), Expect = 8.890e-37
Identity = 70/184 (38.04%), Postives = 104/184 (56.52%), Query Frame = 1
Query:   16 YPYMNKPNAMQLWFDQTEIQETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPN-WTHWDLTNICPE-NSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPID 561
            Y + NKP     W +  +++  ++ALIDPD  FL+PLT W+     ++  + + LE + L     V +G+P GQ +GL + W  ++ + IC   +S C T     A RYY + PPY+ H +DWRR+   WV   P+VYE YP LLAE  AY+ AAA  ++ H R+N+  + N     E WD +D
Sbjct:    1 YHFYNKPRGTLHWLEHGKVEGDVIALIDPDNFFLRPLTVWVKNETNLIVTNPVKLEEVPLR----VSEGFPVGQFYGLGDQWVRFNRSYICGSPHSPCTTVLPKDAWRYYTVGPPYILHVNDWRRVARSWVEFVPRVYEEYPKLLAEMYAYSMAAAHNNLPHTRVNSHMVSNVDAYGEGWDHVD 180          
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI64_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.130e-35
Identity = 91/271 (33.58%), Postives = 130/271 (47.97%), Query Frame = 1
Query:    4 TGEPYPYMNKPNAMQLWFDQTE--IQETIVALIDPDFIFLKPLTTWLSPTETVVKGDGLSLEGLKLENGGWVRKGYPAGQRFGLPN-WTHWDLTN--ICPENSLCATTSTTAAKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAAATLDMKHYRINNFAIENEKVDYELWDPIDH-QMDNVCDIGIEPRDIESRDVRSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPMDIQESTYKV 798
            TG  YPY NKP  MQ +       I  TIVA++DPD +F+KPLT +L P +T +  D  ++  L+      + +GYPA QR+GL + W  WD     +  E S   T     A  +Y + PPY+AH  DW ++  +WV   P+    YP LL+E  A   A+A L + H  +  F + N     E W  ID    D VC+    P             LP  IHYC  +RVG + + K   + +   +  +CD+P L  PP  +     K+
Sbjct:  116 TGHRYPYYNKPFGMQHFLATANPPITNTIVAVLDPDQVFMKPLTPFLDP-DTTILADRNTMPPLRFNGMPVITEGYPASQRYGLGSEWRRWDGLGRIVQDEKSPALTVDPQLADDHYPIGPPYVAHVRDWLKMADKWVEFMPRSLIEYPHLLSEMFALCIASAHLRLPHTVVRTFMVSNADDGNEGWPLIDKLSEDEVCNAHNAP---------DTSALPVVIHYCQHFRVGIYSWGKWEPKLQ---ELFKCDSPYLLEPPDHLASLRIKI 373          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9550.17566.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.680e-19494.36protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4L7... [more]
Hypothetical2.770e-4136.72protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.090e-3938.17protein (Fragment) n=2 Tax=Pelagomonas calceolata ... [more]
Hypothetical2.800e-3933.21protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Uncharacterized5.630e-3934.21protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU90... [more]
Uncharacterized2.760e-3834.27protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Uncharacterized7.810e-3832.71protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Hypothetical6.540e-3732.97protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Hypothetical8.890e-3738.04protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Uncharacterized1.130e-3533.58protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9550contigE_fasciculatus_S2_contig9550:38..4926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score534.6
Seed ortholog evalue2.5e-149
Seed eggNOG ortholog2880.D7G4L7
Model size798
KEGG koko:K20781
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
Exons8
EggNOG OGs2CMIY@1,2QQG8@2759
Cds size774
CAZyGT96
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9550.17566.1prot_E_fasciculatus_S2_contig9550.17566.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9550 62..4926 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842601.888339-UTR-E_fasciculatus_S2_contig9550:37..611696842601.888339-UTR-E_fasciculatus_S2_contig9550:37..61Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9550 38..61 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842601.9053566-CDS-E_fasciculatus_S2_contig9550:61..1061696842601.9053566-CDS-E_fasciculatus_S2_contig9550:61..106Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9550 62..106 +
1696842601.9181173-CDS-E_fasciculatus_S2_contig9550:457..6201696842601.9181173-CDS-E_fasciculatus_S2_contig9550:457..620Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9550 458..620 +
1696842601.9344716-CDS-E_fasciculatus_S2_contig9550:1071..11631696842601.9344716-CDS-E_fasciculatus_S2_contig9550:1071..1163Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9550 1072..1163 +
1696842601.9455528-CDS-E_fasciculatus_S2_contig9550:1903..19961696842601.9455528-CDS-E_fasciculatus_S2_contig9550:1903..1996Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9550 1904..1996 +
1696842601.9565444-CDS-E_fasciculatus_S2_contig9550:2254..23681696842601.9565444-CDS-E_fasciculatus_S2_contig9550:2254..2368Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9550 2255..2368 +
1696842601.9677885-CDS-E_fasciculatus_S2_contig9550:2850..29171696842601.9677885-CDS-E_fasciculatus_S2_contig9550:2850..2917Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9550 2851..2917 +
1696842601.9789107-CDS-E_fasciculatus_S2_contig9550:3948..40511696842601.9789107-CDS-E_fasciculatus_S2_contig9550:3948..4051Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9550 3949..4051 +
1696842601.9896643-CDS-E_fasciculatus_S2_contig9550:4829..49261696842601.9896643-CDS-E_fasciculatus_S2_contig9550:4829..4926Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9550 4830..4926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9550.17566.1

>prot_E_fasciculatus_S2_contig9550.17566.1 ID=prot_E_fasciculatus_S2_contig9550.17566.1|Name=mRNA_E_fasciculatus_S2_contig9550.17566.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=258bp
MNKPNAMQLWFDQTEIQETIVALIDPDFIFLKPLTTWLSPTETVVKGDGL
SLEGLKLENGGWVRKGYPAGQRFGLPNWTHWDLTNICPENSLCATTSTTA
AKRYYDLIPPYLAHQDDWRRLLPEWVAQAPKVYEMYPSLLAEQTAYATAA
ATLDMKHYRINNFAIENEKVDYELWDPIDHQMDNVCDIGIEPRDIESRDV
RSFDRLPNFIHYCHMYRVGQWLFNKRRYRKESDYDQLQCDTPMLETPPMD
IQESTYKV
back to top

mRNA from alignment at E_fasciculatus_S2_contig9550:38..4926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9550.17566.1 ID=mRNA_E_fasciculatus_S2_contig9550.17566.1|Name=mRNA_E_fasciculatus_S2_contig9550.17566.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4889bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9550:38..4926+ (Ectocarpus fasciculatus EfasUO2)
CAGACCGGGGAACCCTACCCGTACATGAACAAGCCGAATGCCATGCAGCT GTGGTTTGACCAGACAGAGGTATGTATGCTTTTAGGTTTTCTTTTTTAAA GAAAAAATACAAGTACAAACACCGAAAGACTACCCGTTCGAGATAAAAGC TACAGCAGTCGAAGGGGATGTGTTGAAGTCTTTACAATGAATGGTAAAAA ACCAACTGGTCGCGCATCATGCACTCGTGCGTTCGTTGCATAGCTTTCCT TAGCGGTTGTTCCAACCCCGATGCCAGGTCTCGTTTTCTTCTTTTTTTTT TTGCATCGTGGTACTGTAGACCGAAAGCTGCCCAAGTGAACCAGGACTCT TGTTGCTACCAATCACATCACCGAATGAAGAAGGATTTGTTTTGCGCTTT CCTCCGCCCCCGCTCCACAGATCCAGGAAACTATCGTAGCCCTGATAGAC CCGGACTTCATCTTCCTCAAGCCCCTGACGACTTGGCTGAGCCCGACTGA AACCGTCGTCAAGGGCGACGGGCTGAGCTTGGAAGGGCTCAAGCTAGAGA ACGGGGGCTGGGTGCGCAAGGGTTACCCAGCAGGTGTGACGGCATACGTG TTTGCCTACAGAGTGGTTGGTTGTAGCTTGGTTTTGTGCTTCCGTGTTTC CTGTAGAAATATTTTGCCCGATACCCATATATACCAGTGCGTTCTTCGCC AGGCCGTCAGTATTGGTGCGTCTGATGGCGGTCTTGAGGAGGGGGCCACG TGGCGAAGGAAAGCTTGTTGGTTTGCGAAGATGAGACGTACAGTCAGGTC TACTCGCAGTCTGTGCCTCCCCAAGGTTGTGGTTCCACCTGGCAGGGCTC AAGCCCTAGGCAAAAGCGGGCTGAGTGAGAGCGGTCAGCCCTATCGTATC GCCCTGCCGGTGAGAAATCGCAATCGAGAGAATACCATGAGCAACATCAG CCTCACAGTTTCATAAAACGAAAAATATGCGGGAATTGTTTCATCTAGCC TTATCCCGGTGGCTTGGTCTTGCTGTCGAGGCAGGGCAGCGTTTCGGCCT CCCCAACTGGACCCATTGGGACCTGACCAACATATGCCCAGAGAACTCGC TCTGCGCCACCACGTCCACCACAGCGGTGAGCAGCGTCTGTCCGTCCGTC TCTTGTCGTGCTTGCGTACCGTGTGTCGGCGGCGTGTGGGCAGGGTAGCC TTCGTGGAGGCCTTGGGGTTTGGCCGTTTTGGTGTTGAGCGAGCGGTGTT GGACGTGATCCGGTCGCATATCTTGTCGTCTTTCGGTGTCTGTGCGGCTG TGTTTGCTTTTTTTTTGTGAAAATGCTACAAACACAAGGGAACACAAGGG GTGCTTGCCTACCTTTGTGTGGGAATGTGCATCAGACGAAGGCATATTCT AAGGTAGTTGTACGACTACAGTAGTGGACTGTATCTTAGCTCATCGGGCC TTCGACTGGCGAGTTGTATTCGGGGGGGAGGAAAATTCAGACTTCTTGAT CTACGTGTATGCGTTTCTTTGCACCCTTCTCTTCCTTCGGAAACGGTGCA TGCATATATGCGACCTACAGTGTCAACGTACGGCTTGTTCTTCTAGGCTG CATCACAGCACACAGATGTCGAAGAGTCTCGTTTAGCTCTTCTTTTTTTT TTTCTCTTGACACAGCAAACTTGTGTGTCAGACTGCATGTAACGACCGCG CTAACCGGCTGACCAATAATAAAAGGCTAGCCGGTTTCAGTGTGGCTAAG CTACACACGGGAAAGAAGTTGCGATACGGTGCTACGGGAGGCCCTCAACA GCAGTGTGTGCGTGTGTGTGCCTATGATGCTGCCGCATCCACGTCTCTCT CTTCTGTCCGGAGCAGGCGAAGAGGTACTACGACTTGATCCCGCCCTACC TAGCTCACCAGGATGATTGGCGAAGGCTGCTACCGGAATGGGTCGCCCAG GCGCCAAAGGTACGGCATGGTAGGGTTACGGTTACCGTTGTTTACCTTGC AGGGAAACTCGCATGGAGTGTTTCTGTGTTCGGGCATGTGTCATGGGTGA ATCTGCTTTTTTGGGAACAGAAGATAGTGTGGTGCGTTGGCGAGCGTCGA TTTCGATGGACATGGTCGTGAACGTCGATTTCGATGAGCATAGTCGTCTA GTACCGACCTACTGTACCCTCCCTTTTTCGCTGTCCTGCTCCTGCTGTCG ACGTGTTGATGATCCAGGTGTACGAGATGTATCCCTCCCTGCTGGCGGAG CAAACAGCCTACGCTACCGCGGCAGCGACCCTTGACATGAAGCACTACCG CATCAACAACTTCGCCATAGAGAACGAAAAAGTAAGACTATTGATAGCCG GTCAACTTCGAAAATGCGCATGATTCGTTGAACAAGTGGCAGCTTTACAC TCGTATTTGGTTTTTGTGACTTTGTCTTGGCTTAAGCTTGGGGCATGCGA CTGACTTACCATGTACAAGAGCAACTGTCAACATCCAAGAAGAAGAACAA CAGACAGCCACACCTGCAGCAACAGAAACAGCAACAAAAACAAGGGGAGA CTGCCTCCTTTCGGCGCGCCCTTGTTTCCTGTTCCAATTCCTTCCCCGGC TTTGGTCTAGACTAATCTTACACTCTCCATTTCACTTACCACGACGTGGC GAGTGGTGTAAAAGTACATCGTAGCGCGAAGCCCTCTGTATGTGGTCGTT AACCAATCATTTGTTGTGTGTGTCGTGTACTTGAATATGTCCGTATTTTC TTGCTGGTGTTGCTTTTGCCGATGGCTGTCATTGCCCTGAACGTGACGGT TTCTTCTGGCAAGGTGGACTACGAGCTGTGGGATCCCATTGACCACCAGA TGGACAACGTCTGCGACATCGGCATCGAACGTGAGTAATGTACCACAGTT TACTCTCGTTCCCACGGTGAATGACCTGTCTTTGTTGGATGGTCGGTCGG TTCGTTCGCGGCGACTGAAACAGCCTAAGGCTCAAATGTGACCGCTGCAG GGTGTTCGACGTTGTCGTCGGGCCGGCCAACTTCTGCACCTGTCGTTCTG ATACGGTTAGGGGATATGAAGTATGTGCTGTGCTGTCAGCAACACCAAAA GTGGCACCATAAGTGTTGCGGCTGTAAGTGCTGTAAGTGCGGCTGGCCTT GATGCGGCGAAGAACGTTTTGTTGTTGTTGGCAGATGATCTGTTGAATGT GGAACTAATGTAACGTTACCGTGACGGAGTAGCCATCCAAAAAGCTTCTC CGTCGTTTTGTAGTGTTTCGTTGCCTGTTGCCTGGTGCCGCTGTTGTTTT GTTGTTGTTTTTTTTTTTGTTGTGTCGTTTCTGAGTTTGTTGGATGTGAA GCTCGGCCCCGCCCGTACGCTGGCAAGTATATCTATATCGTATCTCCTCC CTCCCGTGGTTCTTTTTGTACTGTACCATGGTATTGTACCATATTGTATA ACTGCGTCTTTTCCCGTCACTTGTTTGCGTCATGGAGTACGCTGTGCATC ATTTGCGGCATCTCATGGGCACAGTTGGCGTTTTCAGGCCTGAAAGTGAA CAGCTCAGTAGACGTTCTCTACTCTACCACTTGGGACATGACACAAACAT TGCAGTATATAGCTCGATCACGACTTGGGCGCCTCGCTCGCTTTGTTGGG TTTCTCGTATCGCTTCTTTCGGCAGGGTGGAAGTCCTACCCACCCGTATC GCCCGAGGTTTTTCGCCCTCGCTACCGATATGCGCACGAGAAGGCTAGCG CAGTCCTAGCCATGTTTTTCTTACGATTCCATCCTCACCGACATGCTCTT GTGCGATGCTCTTGTCTCTTGCGCGTATCCATCCCTCCCTTCCACTTGCT TTGCTTTGCTTTGCTTGGTGTTGGTGTTGCGGCTATCGTTGTGTTGCCGA TGTCGACGCAGCCCGGGACATCGAGAGCAGAGACGTGCGGTCTTTTGATC GATTGCCCAACTTCATCCACTACTGCCACATGTACCGCGTCGGCCAGTGG CTCTTCAACAAGCGGTGAGACAAAGGCCGGTTCCATGTTTTTTTTTGTCT CCTTTTATCATGTCGAATCCATCTGTATCCACAGATGAGAGTCCAGGACA AACTAGAACGAATCCATGCCGTTAGCGGAAGTGCCACGTTTCATCTTCTT TGTTTTTTTTACAAGCGGTGAAATTACCGCCAGTTCGGGTTTCTCTTTTG TTTTGTGTCCATCATTCCCTTCACGGACACGGCAGCATCACACATGCCTG AACGCACGTGACACCGCTTGCTTGCCCAATGCAGAGGTCGATGTGTCTGT CAATGATTGGACGGAGGTCTCCACCCCCCCTCGAATTTTGTTGGACCGAC GAGAGAGTTGCTCATGTCGTCGTTGGTGAAGCTGCCACCACTGCCACTGC TACGGTGTCTCATCTCATGTGTATGTGAGTTTCCGTGCCGGCTCCTTGTT CTCTTTCGAGCCCTGCCGCTGTGCTCTGGATCACCCAAAGCCGCAGGTCG ATGTCGTCGTGACAATAACGCGCATCACGTGCTTCCCTTCCCTTGTCGAG TGTGGCACACCGAGAAACCAAGCCCGTTTTTTTTTTTTTTTTTTGTACGT TTTTTTTCCGGTCGTTTTTTTTTTCAGGCGGTTTTGAAAGGAGAGCGATT TCGACCAGCTGCAGGTCGANNNNNNNNNNGGGCTCCGGGCGTGCTTCTTT TTTCTTTTGGGGCGTGGCCCGCGGGGACCCCGCGCCCGTTTTTTTTTTTT TTTTTTTGTGTACGTTTTTATGCCGGTCGTTTGTTTCTCCAGGCGGTATC GAAAGGAGAGCGATTACGACCAGCTGCAGTGCGACACACCGATGCTCGAG ACGCCGCCCATGGACATACAAGAGAGCACCTACAAGGTA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9550:38..4926+

>mRNA_E_fasciculatus_S2_contig9550.17566.1 ID=mRNA_E_fasciculatus_S2_contig9550.17566.1|Name=mRNA_E_fasciculatus_S2_contig9550.17566.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=774bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9550:38..4926+ (Ectocarpus fasciculatus EfasUO2)
ATGAACAAGCCGAATGCCATGCAGCTGTGGTTTGACCAGACAGAGATCCA
GGAAACTATCGTAGCCCTGATAGACCCGGACTTCATCTTCCTCAAGCCCC
TGACGACTTGGCTGAGCCCGACTGAAACCGTCGTCAAGGGCGACGGGCTG
AGCTTGGAAGGGCTCAAGCTAGAGAACGGGGGCTGGGTGCGCAAGGGTTA
CCCAGCAGGGCAGCGTTTCGGCCTCCCCAACTGGACCCATTGGGACCTGA
CCAACATATGCCCAGAGAACTCGCTCTGCGCCACCACGTCCACCACAGCG
GCGAAGAGGTACTACGACTTGATCCCGCCCTACCTAGCTCACCAGGATGA
TTGGCGAAGGCTGCTACCGGAATGGGTCGCCCAGGCGCCAAAGGTGTACG
AGATGTATCCCTCCCTGCTGGCGGAGCAAACAGCCTACGCTACCGCGGCA
GCGACCCTTGACATGAAGCACTACCGCATCAACAACTTCGCCATAGAGAA
CGAAAAAGTGGACTACGAGCTGTGGGATCCCATTGACCACCAGATGGACA
ACGTCTGCGACATCGGCATCGAACCCCGGGACATCGAGAGCAGAGACGTG
CGGTCTTTTGATCGATTGCCCAACTTCATCCACTACTGCCACATGTACCG
CGTCGGCCAGTGGCTCTTCAACAAGCGGCGGTATCGAAAGGAGAGCGATT
ACGACCAGCTGCAGTGCGACACACCGATGCTCGAGACGCCGCCCATGGAC
ATACAAGAGAGCACCTACAAGGTA
back to top