mRNA_E_fasciculatus_S2_contig955.17563.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG4_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.400e-40 Identity = 100/222 (45.05%), Postives = 138/222 (62.16%), Query Frame = 1
Query: 7 WYASDIASTETDYYDHIAIYMSEEE--PTESTLSFLFVPYTRVETGVSETIYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIVTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGN--TAAVPQFGGGNT 660
W ASD A T T Y + +A+ S + P +SF++VPY R T +LTIGKTTKK L G TT FPAL +S++ + T +S + + +G L L ++QG +S T+++EV PLD+G+F GN+GGFWELLL+LWGL F ATR++R P+++AR+F +Q K+IV RRRSLSVDS S E+ P+ + F GN A P+ GGNT
Sbjct: 64 WLASDTADTATIYTEQVAVTASASDDLPEVEDISFVYVPYDRYTTADPIDELNTVDLTIGKTTKKMLDGSSTTVFPALTISTTTTVIQETSLPSSTYAE-YALGYLKLMVRQGPFSLTSVEEVSPLDVGSFFGNLGGFWELLLVLWGLLFFATRQDRTPQLRARNF---IQPLKEIVARRRSLSVDSGASIVQP-EELPQERSFFGGNHPPALPPRPRGGNT 280
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW4_ECTSI) HSP 1 Score: 120 bits (301), Expect = 1.490e-27 Identity = 64/83 (77.11%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 172 TIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDG-DDHVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFW 417
TIGKTTKK L+GDVTTTFP LVLSSSDF ENT T+ DD D GRLYLD+KQG YS TAI EVDPLDIGTFLGNIGGFW
Sbjct: 118 TIGKTTKKKLNGDVTTTFPPLVLSSSDFTAENTWATSEDDSFQDASFGRLYLDIKQGDYSRTAIAEVDPLDIGTFLGNIGGFW 200
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW9_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 6.550e-11 Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 1
Query: 334 QGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDI-----VTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGNTAAVPQFGGGNTAVPTGPPVPPVNDGAASTATRRASND 738
QGSYS I+++DPLDIG LGNIGGFW +L+ + +FF E+ P+++AR F T + T+++ T S S D++ T EQ P+W G G + V T P +P + + S RR+SN+
Sbjct: 8 QGSYSFITIEDIDPLDIGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFY-TKRGTEEMRRRLSATSSTSKSPDASQGATEVREQLPDWADERNGGEGEAE----GKSEVET-PAIPSLKNPTPSMIRRRSSNE 141
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM8_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.620e-10 Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 310 GRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIVTR-----RRSLSVDSAPSTTSGVEQRPEWE 606
G L + + QGSYS I+++DPLDIG LGNIGGFW +L+ + +FF E+ P+++AR F T + T +I+ R S S D++ T EQ P+WE
Sbjct: 169 GFLNIYVLQGSYSLIIIEDIDPLDIGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFY-TKRGTDEIIRRLSATSSTSKSPDASQGATEVREQPPDWE 271
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY22_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 5.180e-10 Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 1 MWWYASDIASTETDYYDHIAIYMSEEEPTESTLSFLFVPYTRVETGVSETIYKHTEL 171
MWW SD+AS ETDY+DHI +YM+EEEPTEST SFL VPY+R+ V E IY EL
Sbjct: 134 MWWIQSDMASDETDYFDHIGMYMAEEEPTESTSSFLHVPYSRILPDV-EVIYTVAEL 189
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 5.200e-10 Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 313 RLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIVTRRRSLSVDSAPSTTSG------VEQRPEWE 606
+L L ++Q SH I EVDPLD+ GN+GGFW+LL+I+W +FF+A + +P +K R+F ++V TK + R + P+ G VE+RP WE
Sbjct: 252 QLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFWDLLMIIWPIFFVAASRQ-DPHLKPRNFKESV--TKGLSGLR--IGDSKHPAARDGFNGSPSVEERPNWE 350
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 6.590e-10 Identity = 59/185 (31.89%), Postives = 92/185 (49.73%), Query Frame = 1
Query: 112 VPYTRVETGVSETIYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVI---GRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQT------TKDIVTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGNTAAVP 639
VPY+ + T VS + + HT + IG TT+ L + AL +S++ T D+ + ++ +L L ++Q S I EVDPLD+ GN+GGFW+LL+I+W +FF+A + +P +K R+F K+V D R + +P VE+RP WE + VP
Sbjct: 233 VPYSCI-TNVSSS-HSHTYVGIGVTTEDKLGQEPIVNNKALSVSTA---------TVKDEVNPAIVKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQ-DPHLKPRNFKKSVNKGLGGLRVGDSTHRGARDDFNGSPP----VEERPYWEQEGKKEVVEVP 401
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 1.920e-9 Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 1
Query: 175 IGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGD-DHVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKT 507
IG T + +GD+ +++ A+ ++S + + DGD RL +++KQ S I E DP + LGNIGGFW+L+LILW LFF+A + EP +K R+F K+
Sbjct: 49 IGLTNQIKYTGDIISSYKAVSINSGVYKDQA-------DGDITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQP-EPNLKPRNFAKS 152
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 1.450e-8 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 313 RLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTT 519
RL +++KQ S I E DP + LGNIGGFW+L+LILW LFF+A + EP +K R+F K+V T
Sbjct: 267 RLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQP-EPNLKPRNFAKSVTRT 334
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 1.790e-8 Identity = 60/175 (34.29%), Postives = 89/175 (50.86%), Query Frame = 1
Query: 163 TELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIV---TRR---------RSLSVDSAPSTTSGVEQRPE-WEAAFRGNTAAVPQFG 648
T + IG T + L D T ++ AL +SS+ + + T T G L +++ Q + S I E++PL+I GN+GGFW+LLL+LW +FFI+ + +P +K R+F K+V D V TRR R + D + T E+RP WE G T +P FG
Sbjct: 11 TYMGIGLTKEDKLYEDDTASYKALEISSALYKDKRTDNIT---GIASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFWDLLLLLWPIFFISASRQ-DPHLKGRNFKKSVTRGSDRVVDLTRRVNNATPYRVRRKAGDRKSNATDEDEERPPAWET---GGT--LPAFG 176 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig955.17563.1 >prot_E_fasciculatus_S2_contig955.17563.1 ID=prot_E_fasciculatus_S2_contig955.17563.1|Name=mRNA_E_fasciculatus_S2_contig955.17563.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=314bp MWWYASDIASTETDYYDHIAIYMSEEEPTESTLSFLFVPYTRVETGVSETback to top mRNA from alignment at E_fasciculatus_S2_contig955:549..5382+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig955.17563.1 ID=mRNA_E_fasciculatus_S2_contig955.17563.1|Name=mRNA_E_fasciculatus_S2_contig955.17563.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4834bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig955:549..5382+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig955:549..5382+ >mRNA_E_fasciculatus_S2_contig955.17563.1 ID=mRNA_E_fasciculatus_S2_contig955.17563.1|Name=mRNA_E_fasciculatus_S2_contig955.17563.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=942bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig955:549..5382+ (Ectocarpus fasciculatus EfasUO2)back to top |