mRNA_E_fasciculatus_S2_contig955.17563.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig955.17563.1
Unique NamemRNA_E_fasciculatus_S2_contig955.17563.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG4_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.400e-40
Identity = 100/222 (45.05%), Postives = 138/222 (62.16%), Query Frame = 1
Query:    7 WYASDIASTETDYYDHIAIYMSEEE--PTESTLSFLFVPYTRVETGVSETIYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIVTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGN--TAAVPQFGGGNT 660
            W ASD A T T Y + +A+  S  +  P    +SF++VPY R  T          +LTIGKTTKK L G  TT FPAL +S++    + T   +S   + + +G L L ++QG +S T+++EV PLD+G+F GN+GGFWELLL+LWGL F ATR++R P+++AR+F   +Q  K+IV RRRSLSVDS  S     E+ P+  + F GN   A  P+  GGNT
Sbjct:   64 WLASDTADTATIYTEQVAVTASASDDLPEVEDISFVYVPYDRYTTADPIDELNTVDLTIGKTTKKMLDGSSTTVFPALTISTTTTVIQETSLPSSTYAE-YALGYLKLMVRQGPFSLTSVEEVSPLDVGSFFGNLGGFWELLLVLWGLLFFATRQDRTPQLRARNF---IQPLKEIVARRRSLSVDSGASIVQP-EELPQERSFFGGNHPPALPPRPRGGNT 280          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.490e-27
Identity = 64/83 (77.11%), Postives = 67/83 (80.72%), Query Frame = 1
Query:  172 TIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDG-DDHVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFW 417
            TIGKTTKK L+GDVTTTFP LVLSSSDF  ENT  T+ DD   D   GRLYLD+KQG YS TAI EVDPLDIGTFLGNIGGFW
Sbjct:  118 TIGKTTKKKLNGDVTTTFPPLVLSSSDFTAENTWATSEDDSFQDASFGRLYLDIKQGDYSRTAIAEVDPLDIGTFLGNIGGFW 200          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW9_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 6.550e-11
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  334 QGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDI-----VTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGNTAAVPQFGGGNTAVPTGPPVPPVNDGAASTATRRASND 738
            QGSYS   I+++DPLDIG  LGNIGGFW  +L+ + +FF     E+ P+++AR F  T + T+++      T   S S D++   T   EQ P+W     G          G + V T P +P + +   S   RR+SN+
Sbjct:    8 QGSYSFITIEDIDPLDIGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFY-TKRGTEEMRRRLSATSSTSKSPDASQGATEVREQLPDWADERNGGEGEAE----GKSEVET-PAIPSLKNPTPSMIRRRSSNE 141          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.620e-10
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  310 GRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIVTR-----RRSLSVDSAPSTTSGVEQRPEWE 606
            G L + + QGSYS   I+++DPLDIG  LGNIGGFW  +L+ + +FF     E+ P+++AR F  T + T +I+ R       S S D++   T   EQ P+WE
Sbjct:  169 GFLNIYVLQGSYSLIIIEDIDPLDIGDLLGNIGGFWGYVLLSFAVFFTVAEPEKLPRLRARAFY-TKRGTDEIIRRLSATSSTSKSPDASQGATEVREQPPDWE 271          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY22_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.180e-10
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 MWWYASDIASTETDYYDHIAIYMSEEEPTESTLSFLFVPYTRVETGVSETIYKHTEL 171
            MWW  SD+AS ETDY+DHI +YM+EEEPTEST SFL VPY+R+   V E IY   EL
Sbjct:  134 MWWIQSDMASDETDYFDHIGMYMAEEEPTESTSSFLHVPYSRILPDV-EVIYTVAEL 189          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.200e-10
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  313 RLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIVTRRRSLSVDSAPSTTSG------VEQRPEWE 606
            +L L ++Q   SH  I EVDPLD+    GN+GGFW+LL+I+W +FF+A   + +P +K R+F ++V  TK +   R  +     P+   G      VE+RP WE
Sbjct:  252 QLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFWDLLMIIWPIFFVAASRQ-DPHLKPRNFKESV--TKGLSGLR--IGDSKHPAARDGFNGSPSVEERPNWE 350          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.590e-10
Identity = 59/185 (31.89%), Postives = 92/185 (49.73%), Query Frame = 1
Query:  112 VPYTRVETGVSETIYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVI---GRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQT------TKDIVTRRRSLSVDSAPSTTSGVEQRPEWEAAFRGNTAAVP 639
            VPY+ + T VS + + HT + IG TT+  L  +      AL +S++         T  D+ +  ++    +L L ++Q   S   I EVDPLD+    GN+GGFW+LL+I+W +FF+A   + +P +K R+F K+V          D   R      + +P     VE+RP WE   +     VP
Sbjct:  233 VPYSCI-TNVSSS-HSHTYVGIGVTTEDKLGQEPIVNNKALSVSTA---------TVKDEVNPAIVKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQ-DPHLKPRNFKKSVNKGLGGLRVGDSTHRGARDDFNGSPP----VEERPYWEQEGKKEVVEVP 401          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.920e-9
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  175 IGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGD-DHVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKT 507
            IG T +   +GD+ +++ A+ ++S  +  +        DGD      RL +++KQ   S   I E DP +    LGNIGGFW+L+LILW LFF+A  +  EP +K R+F K+
Sbjct:   49 IGLTNQIKYTGDIISSYKAVSINSGVYKDQA-------DGDITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQP-EPNLKPRNFAKS 152          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.450e-8
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  313 RLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTT 519
            RL +++KQ   S   I E DP +    LGNIGGFW+L+LILW LFF+A  +  EP +K R+F K+V  T
Sbjct:  267 RLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQP-EPNLKPRNFAKSVTRT 334          
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.790e-8
Identity = 60/175 (34.29%), Postives = 89/175 (50.86%), Query Frame = 1
Query:  163 TELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDDHVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFFIATREEREPKMKARDFGKTVQTTKDIV---TRR---------RSLSVDSAPSTTSGVEQRPE-WEAAFRGNTAAVPQFG 648
            T + IG T +  L  D T ++ AL +SS+ +  + T   T   G       L +++ Q + S   I E++PL+I    GN+GGFW+LLL+LW +FFI+   + +P +K R+F K+V    D V   TRR         R  + D   + T   E+RP  WE    G T  +P FG
Sbjct:   11 TYMGIGLTKEDKLYEDDTASYKALEISSALYKDKRTDNIT---GIASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFWDLLLLLWPIFFISASRQ-DPHLKGRNFKKSVTRGSDRVVDLTRRVNNATPYRVRRKAGDRKSNATDEDEERPPAWET---GGT--LPAFG 176          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig955.17563.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
Uncharacterized1.400e-4045.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.490e-2777.11protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.550e-1135.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.620e-1041.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.180e-1064.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.200e-1039.42protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.590e-1031.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.920e-937.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.450e-849.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.790e-834.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig955contigE_fasciculatus_S2_contig955:549..5382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1962
Hectar predicted targeting categoryother localisation
Exons6
Cds size942
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig955.17563.1prot_E_fasciculatus_S2_contig955.17563.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig955 549..4362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842601.655623-CDS-E_fasciculatus_S2_contig955:548..5951696842601.655623-CDS-E_fasciculatus_S2_contig955:548..595Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig955 549..595 +
1696842601.6663358-CDS-E_fasciculatus_S2_contig955:1079..12031696842601.6663358-CDS-E_fasciculatus_S2_contig955:1079..1203Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig955 1080..1203 +
1696842601.6763544-CDS-E_fasciculatus_S2_contig955:1965..20611696842601.6763544-CDS-E_fasciculatus_S2_contig955:1965..2061Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig955 1966..2061 +
1696842601.687124-CDS-E_fasciculatus_S2_contig955:2593..27441696842601.687124-CDS-E_fasciculatus_S2_contig955:2593..2744Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig955 2594..2744 +
1696842601.695974-CDS-E_fasciculatus_S2_contig955:3577..39451696842601.695974-CDS-E_fasciculatus_S2_contig955:3577..3945Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig955 3578..3945 +
1696842601.7102997-CDS-E_fasciculatus_S2_contig955:4206..43621696842601.7102997-CDS-E_fasciculatus_S2_contig955:4206..4362Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig955 4207..4362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842601.7250066-UTR-E_fasciculatus_S2_contig955:4362..53821696842601.7250066-UTR-E_fasciculatus_S2_contig955:4362..5382Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig955 4363..5382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig955.17563.1

>prot_E_fasciculatus_S2_contig955.17563.1 ID=prot_E_fasciculatus_S2_contig955.17563.1|Name=mRNA_E_fasciculatus_S2_contig955.17563.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=314bp
MWWYASDIASTETDYYDHIAIYMSEEEPTESTLSFLFVPYTRVETGVSET
IYKHTELTIGKTTKKDLSGDVTTTFPALVLSSSDFFTENTLTTTSDDGDD
HVIGRLYLDMKQGSYSHTAIKEVDPLDIGTFLGNIGGFWELLLILWGLFF
IATREEREPKMKARDFGKTVQTTKDIVTRRRSLSVDSAPSTTSGVEQRPE
WEAAFRGNTAAVPQFGGGNTAVPTGPPVPPVNDGAASTATRRASNDSSRN
GSTSSALFRRTTSGFSDPHGDSSSANFRRPVVRDMPRRGSKTGGNLPEEQ
PRAPPSYAEMSAN*
back to top

mRNA from alignment at E_fasciculatus_S2_contig955:549..5382+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig955.17563.1 ID=mRNA_E_fasciculatus_S2_contig955.17563.1|Name=mRNA_E_fasciculatus_S2_contig955.17563.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4834bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig955:549..5382+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGTGGTACGCATCTGACATCGCATCTACTGAGACCGACTATTAGTG AGTGGTGGCGTTACTCGTTGTGAGCGCAGGAAGCGCGCTGCTGTAGCCTT TTTCGCTAGGGATCACCGTTTTCACCAAATGAGGAATGACTACATGTATC TGAGGTTGTTCTGGGGCGTTCTCCGGCCGGAACAGTGGCCTCTACTCGTT GGCCGACCGCGAGGTCGACCCGCGTTCTTTTGAGTAAAATGTACCATCTC CTTAGCTGCAAGGATGCTTCTCCGTCTCCTCAATGTTGCTCAGCTCTCAA TTCTTCGGACGACGAGTAGCTTTCGCTAAAAAATGGTGGGAGTACGATTT CGTGTCATTTTTTAGTCCGATGTTTGAACTCGTCCACGGTGCGTGCGCCT CCCCTTATCTCATCGGCCTGGCATCGTTTGTCTCATGTTGTCTTCCTGTC GACCGCTGGCCTGGTATCGTCGTTGCTGTTGTTGTTGCTGCTACTGCTAC TCTTGGTGTTGTTGTCGATGCTTTCACTCAGCGATCACATTGCGATCTAC ATGTCGGAAGAGGAGCCCACGGAGAGCACTTTGTCCTTCCTGTTCGTGCC GTACACCCGAGTGGAGACTGGTGTCAGCGAGACCATCTATAAGCATACAG AACTGGTACGATATTGCTTTTGCCGCTGTTGGGAACTACTTGTAGGCATA CCGTCTGGTTCATAGCATACCGTCTGGTTCATCTATAGACTAGGCTACTA AATCTACCGCGACATGCTATTATCTACTGCGAATTCCGGAATATACGGAG ACCTTCAACAACGGGTATTTCTAATTTGGCTGTCGATCCTGCGGATTCTC CTTGCTTCGACAACTAGTTTGAGCCGCGGATGTCTGTGTGGACTTTAGCA GATGTTACTGTAGCAGGTCCGGAATGGTTGTTTGGCTACATGCCGTGCTT TGCAGCACGCTGACCCTGTCCCTGGATCGTCGCTGGCAAAGTGCTGGGAG TTGGAAATGATCTTCGGACGGACAAAGCGCCTTGGTATAAGCTAGGCCCC GTGGCTGAAACCATCGTCAGCGGCCGCGCACGCGAGGGTGGGAGATCTCG TGTGCGTTTTCGCCGCGTCCAACGTCCAACAAACACCAACGCTTTTTGCA TCTTGCCCTTACCATAGTCCCCTTGCCCTCCGAGCTTCGCATGGAATGTG TCGCACGTCACCTTTCCGTAGAAACGGCTTTGCTTCGTGGACAATGGTAT GTCATTGTGGTACCGTTTGGGTTGCTGCTGGCTGTCGGAAGAACCATCCA CCGTTCCCGGGCGCAATGATATATATCTGTAGATGTGCCAGTGTTGCATG TGTTCGGTGCAGATTTCCAATGGGCTTGTCTCTCTTGTTCCACTCTGGCT CGCATGTGTTCCCGCAGACCATCGGCAAGACCACAAAAAAGGACCTCAGT GGAGACGTGACGACCACCTTCCCCGCCCTCGTCCTGTCGTCGTCTGACTT TTTCACGGAAAACGTGAGCAGGGAAGGGGCGACGCATGCCTGGGTGCGCC CTTTCACGCTCGAAATCCTTGGCCTTGGTCTGACGCCTTTCATGAGCTCT TTTCCACAGGAGCAGGTAGCGTTTGTACTTTAAGCCGACCTGGCTTTCGC GCCATCCAAAAGCTCGATGTGTCGACGGTGCTTGTTTGATGTCTTCATAT GTTCTACTCGTGGGTCTCGTCCAGCTGTACTTCTTACCTTTGACTGCACC GAATGCGAGGAAGGCGTCTCCCTAATACCATATCATCAAAGTTTGCCCAA AGCTTGTACCATGGTATGTGCCAGCGATAAAGTCTTGGTATCCACGGGCT GTGAGCGGCGTGTTGTTGGATGGGCTCGAATTCTGCCCATAGAACCTTGG CCGAGATCCTCATGACCCCCTCCCCACTCTAATTCTCCGCTTGATGTTGC TGTCTCTCTCTCTCTTCGCCCCCACTGTGGATTTGCTACCGCCCGCTTTT GCCCCTTTCCTGCAATCTTCGTTTCTCTCAACACTCCGCGCGCAGACTTT GACGACAACGTCGGATGATGGCGATGACCACGTTATCGGCAGACTATATC TCGATATGAAGCAAGGATCTTACTCACATACCGCCATCAAAGAGGTCGAC CCATTGGATATTGGAACCTTTCTCGGCAACATCGGTGGATTCTGGGGTAG GTGGCGGCGAATGACAGTAACGACTACTACGTGGTTGTGGAGGTGGTGAC CCCAAACGCTTGAAGAGACGCGATTTTCCCGAACGAACGGCCTTGATGTT TAGCAAGTCGTAAGACGCCAATTATGCAACTGAACCTCAGCGAAACCGCT TCATCGATGATTTTGCACCGGAGACGGAGAGACAGGAATGGGGGTGGCGC CAAGCTGGGAACGTTTCGCGACTCCCCAGAACTCTGTCCATTCCCTGGTT TCGCTTGAAAAATCCATCCTTACCGGCGTATCGGCTATGACGTTTGGGCG TAACCAACAAGGGCATCGGAATCCCCCCTCCCTAAGCTGCGTCTTAGATG CATCTCTTTGCGCTGTTTCTTTGATCGATCGTGTCTTCGTCGTGAACAGT GATTGTAGCCTGGCAGAAACAATCGACGGGGCCACCTGCATGGTGTGGAC ACCCATCGTTTATTCATCATAGGTGTCACAAGCGTGATCCCACAAAGTGC GGTTCCCTCCGTGATCAATATATCTGGTGTTGTCCCAATGCATTCCGCAC TGTATATTTTACGATCATACCAATTAATTAGTGGCCGTCAGAACCCGATC AGTGCTGCAACAGTGAATGTGAATGGCTTAACTTATCGTGCAAGAAATAT TTCGTGCCCGTTCAGTGCACCCATACCCTTAGCATCAACCTCACTTGATG TGTATGCTGAGTCTCTTACCAAATCAGTTCTCGACAGAACTCATCCTCAC CGCCATTGCCAAAAACCTATGCTCCTCACCCTTTATCCCCTGTGTCATTG GCGTTTCTGTTTCTTCCTGCACCCTGCAGAACTGCTGCTCATTTTGTGGG GGCTCTTCTTCATCGCCACACGGGAGGAACGTGAACCAAAGATGAAGGCT CGCGACTTCGGCAAGACAGTCCAGACCACCAAGGACATTGTGACCAGGCG CAGGAGCCTTTCTGTAGACTCTGCTCCTTCTACGACTTCGGGCGTAGAAC AGCGGCCTGAATGGGAAGCCGCATTCCGAGGCAACACCGCCGCCGTCCCC CAGTTCGGCGGAGGTAACACGGCCGTTCCCACCGGGCCTCCTGTGCCTCC CGTGAACGACGGTGCCGCAAGCACCGCCACTCGCCGAGCTTCCAACGACA GCAGCCGCAATGGCAGCACGAGCAGTGCTCTATTTCGCCGCACTACGGTG AGCTAGGGCGAGAGGGTGACGTTGCTTTCGTGAATCGACGATGCTTTCGT TCATTTGTCCTGGTGCTTGGACTGAACCCAAAGGAGCCTTAACTGGTATT CCAGGTGCTCCGGCGACTTTCCAGCTCGCGCTCAATTTGTTCTGCGTTCT TGTATTGGTGAACACAATGAGCACGGCCTGTTCTTCCCACCTCAACACGT CCTTGTCCCCCCTCTGATGACCATTGCCTCCCACGTCGGTGCCCTATCGT AATACCAGAGTGGGTTTTCTGACCCCCACGGTGATTCCTCGAGCGCCAAC TTCAGGCGTCCGGTGGTGCGAGACATGCCCAGGCGGGGGTCGAAAACTGG CGGCAATCTTCCGGAAGAACAACCCCGCGCCCCCCCAAGCTACGCTGAGA TGTCCGCCAATTAGAGCAAGGTCTTTCCGTCCGAGGATGCAGACGATTGT AAACCCAACCTGCCTCAATGTCCATATCAAACCGTACTTGTGGCGGCGTA CGGTGTGGCGGATGACCCCGTAGATTGACCTATAACGATGGGGGTCAACC TTTGAGTGTATGAACGCCAGAGCAATCTCAGCGGCAGCAATAATTCCTCT TCTCAATGGCCGCCTTGACGACGCTATGTTGATTAATTTGTGAGTTTTGT GAGACGTTTTCATATTCCCGGTGTCAACTTTGTTCAGGGTAGTGCTCAGG ATGCTGCGTCACATCATAATGCGTCGCCCAAGTCAGTCTCATCTGCTTTT TGGAACATGCACCGAAGCGAGGGAGGCATGTAAAAGCTGCCGCAGGTAGT CTCCGTTTTTGTAAGATTGTTCACAGGCTTGATCATTCTTCAGCTGGCAG AAGTTTATAGAAAATGCCGGTGGATCGTCTGTCGTTGGCGTATCCCTAGC TGCCGTGTCGCGGCCATTTAGAATCCGCCATGTAGTTATTTATTATCGTG GGTACACACGTGTACCAAATGTTTTTTGGCATGTTGCTAGTGGGTCCATT ATAAGTATACTTTTTACTACTGATAGGTGTATATCTGGCTCGTTGTTGTT GGCTCTCTTTGTGTAACAATTGAGCAGAGGTTTGCGTAGGGGGGAAACAA AGTATTTGGCTCTTTCTTCGCTTGATCTAGTTGTGTGGATGCAAGTGTTG CCTTCGGCACCTCTGTCCGTGTATAAAACCTCAGCAGGTAGAGTGTCCGC CACTGTGGGCGTGAACCAGAGACTGCACAGTAGGAAGAAGGCACGCACTC ACTGTAGGTAGGTGTTTTAATTATTGTAGTAGTCTATAGTTTCTAAACAC GACACCCATGGTGATTCCTATCCATTGAGCACAACTTGTTTTTCCTTGAG CTCGCGCTGCGTGTGGCCGCCGGCTGATTTGTTATCGATATCTGTGTCAA CCGCAGTTCCCATCAATACAAGGTCTATGGAGCG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig955:549..5382+

>mRNA_E_fasciculatus_S2_contig955.17563.1 ID=mRNA_E_fasciculatus_S2_contig955.17563.1|Name=mRNA_E_fasciculatus_S2_contig955.17563.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=942bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig955:549..5382+ (Ectocarpus fasciculatus EfasUO2)
ATGTGGTGGTACGCATCTGACATCGCATCTACTGAGACCGACTATTACGA
TCACATTGCGATCTACATGTCGGAAGAGGAGCCCACGGAGAGCACTTTGT
CCTTCCTGTTCGTGCCGTACACCCGAGTGGAGACTGGTGTCAGCGAGACC
ATCTATAAGCATACAGAACTGACCATCGGCAAGACCACAAAAAAGGACCT
CAGTGGAGACGTGACGACCACCTTCCCCGCCCTCGTCCTGTCGTCGTCTG
ACTTTTTCACGGAAAACACTTTGACGACAACGTCGGATGATGGCGATGAC
CACGTTATCGGCAGACTATATCTCGATATGAAGCAAGGATCTTACTCACA
TACCGCCATCAAAGAGGTCGACCCATTGGATATTGGAACCTTTCTCGGCA
ACATCGGTGGATTCTGGGAACTGCTGCTCATTTTGTGGGGGCTCTTCTTC
ATCGCCACACGGGAGGAACGTGAACCAAAGATGAAGGCTCGCGACTTCGG
CAAGACAGTCCAGACCACCAAGGACATTGTGACCAGGCGCAGGAGCCTTT
CTGTAGACTCTGCTCCTTCTACGACTTCGGGCGTAGAACAGCGGCCTGAA
TGGGAAGCCGCATTCCGAGGCAACACCGCCGCCGTCCCCCAGTTCGGCGG
AGGTAACACGGCCGTTCCCACCGGGCCTCCTGTGCCTCCCGTGAACGACG
GTGCCGCAAGCACCGCCACTCGCCGAGCTTCCAACGACAGCAGCCGCAAT
GGCAGCACGAGCAGTGCTCTATTTCGCCGCACTACGAGTGGGTTTTCTGA
CCCCCACGGTGATTCCTCGAGCGCCAACTTCAGGCGTCCGGTGGTGCGAG
ACATGCCCAGGCGGGGGTCGAAAACTGGCGGCAATCTTCCGGAAGAACAA
CCCCGCGCCCCCCCAAGCTACGCTGAGATGTCCGCCAATTAG
back to top