mRNA_E_fasciculatus_S2_contig9546.17562.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9546.17562.1
Unique Name	mRNA_E_fasciculatus_S2_contig9546.17562.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9546.17562.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.500e-24
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1

Query:    1 MLAPWRAHRKLRSATLALQCRMRQKIAYGELRDLRIKAKDVGNLKGDNDRLKAEVLALRQA 183
            MLAPWRAHRKLRSATLALQCRMRQKIAYGELRDLR+KAKDVGNLK DN+RLKAE+L LRQA
Sbjct:  125 MLAPWRAHRKLRSATLALQCRMRQKIAYGELRDLRMKAKDVGNLKVDNERLKAEILVLRQA 185

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BLAST of mRNA_E_fasciculatus_S2_contig9546.17562.1 vs.
Match: Myosin (motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.450e-17
Identity = 72/145 (49.66%), Postives = 75/145 (51.72%), Query Frame = 1

Query:   64 MRQKIAYGELRDLRIKAKDVGNLKGDNDRLKAEVLALRQAXXXXXXXXXXXXXXXXXXXXXXX-----------EVDXXXXXXXXXXXXXXXXXXQLAEGVVAKSRVPATAASPSSPPQQQPS-----LRTAKSYPVARAAASSL 450
            MRQKIAYGELR LRIKAKDVGNLKG+N+RLKAE+LALRQA     XXXX                         EVD                  QLAEGVVAKSRVP  AA P              LRTAKSYPVAR A   L
Sbjct:  912 MRQKIAYGELRGLRIKAKDVGNLKGENERLKAEILALRQAAAAASXXXXPASDEQVRAKDLVIICQVSSSSNGKEVDSLRREVVTLRARVAELELQLAEGVVAKSRVPVNAALPXXXXXXXXXXXXRPLRTAKSYPVARTAGEKL 1056

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9546.17562.1 vs.
Match: Myosin (D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 8.380e-11
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1

Query:   67 RQKIAYGELRDLRIKAKDVGNLKGDNDRLKAEVLALRQA 183
            RQKIAYGELRDLRIKAKDVGNLKGDN+RLKAE+L LR+A
Sbjct:  946 RQKIAYGELRDLRIKAKDVGNLKGDNERLKAEILVLREA 984

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9546.17562.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9546.17562.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Uncharacterized	1.500e-24	91.80	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Myosin	4.450e-17	49.66	motor domain-containing protein n=2 Tax=Ectocarpus...	[more]
Myosin	8.380e-11	89.74	D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9546	contig	E_fasciculatus_S2_contig9546:785..3043 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	170.6
Seed ortholog evalue	7.2e-40
Seed eggNOG ortholog	2880.D8LTS4
Model size	593
KEGG ko	ko:K10357
Hectar predicted targeting category	mitochondrion
GOs	GO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Exons	3
EggNOG free text desc.	translation initiation factor activity
EggNOG OGs	COG5022@1,KOG0160@2759
Cds size	591
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03019,ko03029,ko04131,ko04812

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842601.5843813-CDS-E_fasciculatus_S2_contig9546:784..936	1696842601.5843813-CDS-E_fasciculatus_S2_contig9546:784..936	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9546 785..936 -
1696842601.597835-CDS-E_fasciculatus_S2_contig9546:2268..2482	1696842601.597835-CDS-E_fasciculatus_S2_contig9546:2268..2482	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9546 2269..2482 -
1696842601.6167746-CDS-E_fasciculatus_S2_contig9546:2818..3043	1696842601.6167746-CDS-E_fasciculatus_S2_contig9546:2818..3043	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9546 2819..3043 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9546.17562.1	prot_E_fasciculatus_S2_contig9546.17562.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9546 785..3043 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9546:785..3043-
coding sequence from alignment at E_fasciculatus_S2_contig9546:785..3043-

protein sequence of mRNA_E_fasciculatus_S2_contig9546.17562.1

>prot_E_fasciculatus_S2_contig9546.17562.1 ID=prot_E_fasciculatus_S2_contig9546.17562.1|Name=mRNA_E_fasciculatus_S2_contig9546.17562.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=197bp
MLAPWRAHRKLRSATLALQCRMRQKIAYGELRDLRIKAKDVGNLKGDNDR
LKAEVLALRQAAAASKAAAPASDEQVSSSSSSRKEVDSLRREVVTLRARV
AELELQLAEGVVAKSRVPATAASPSSPPQQQPSLRTAKSYPVARAAASSL
STVDETESLPRRQRGRFSSTSAVDSSSDKNDGSSRHQAGVTLSFLCE

mRNA from alignment at E_fasciculatus_S2_contig9546:785..3043-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9546.17562.1 ID=mRNA_E_fasciculatus_S2_contig9546.17562.1|Name=mRNA_E_fasciculatus_S2_contig9546.17562.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2259bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9546:785..3043- (Ectocarpus fasciculatus EfasUO2)
ATGCTCGCTCCGTGGCGCGCCCACCGTAAGCTGCGGTCCGCGACTCTGGC
GCTGCAGTGCCGGATGCGGCAGAAGATAGCCTACGGGGAGCTCAGGGATC
TCCGCATCAAGGCCAAGGATGTGGGGAACCTGAAGGGGGACAACGACCGT
CTTAAGGCCGAGGTCCTGGCGCTCAGGCAGGCCGCCGCCGCCTCGAAGGC
TGCGGCGCCTGCAAGCGATGAACAAGTGCGTGCAAAAGAGGTTGCGTCGT
GATTAGGTGTCGTGTCAGGTGCTTAATTGTCTTGTCTTGTCGAGCCACTG
GCGCGGAAGGCAGCTGTTCAAAGCCCGGCGCTTTTGCTGCTGGTGTGGAA
ATTTTTTCTTACCATTAACAGGAAGACTACAGCCTTCGATGCCGTAAACA
GCAGTTCTTGATCTGCCCAACAAGTAGCGGAAAATTCGCCAAGTCTGGGG
AGAGATGTTGAGTTTTTCTGTGGGAACTCGTTCGCGCAGATGGTTGGACC
TGTTTTTGTGTAACCAACCCCCGACTATGTTTTTCGTCTTCCTTTCGACT
TCCATTCTCAGGTGTCGTCGTCGTCGTCTTCCAGAAAAGAGGTGGACAGC
TTGAGGAGGGAGGTGGTCACGCTAAGGGCCAGGGTGGCAGAGCTCGAACT
CCAGTTGGCGGAAGGAGTGGTCGCCAAGAGCAGAGTGCCGGCGACCGCGG
CGTCGCCGTCGTCGCCGCCGCAGCAGCAACCATCGTTGCGAACGGCCAAG
TCTTATCCGGTGGCACGGGCGGCAGGCGAGTAGAGATGCGAATGAACAAG
GCGGTGGTTTGTTTTCTGGTGGTAAATGTGTCGTACAGTCATACTGTAGA
TCGTGAAGGATTGCAAGATCGTAACAACATCGTATCAAGTAGGGCGGCTG
TTTGTGGTACTTAGATATGATGCATCCTCTGTGGGTTGATACGGGTTTGG
GAAGTATGTGTGTGATGGGTACGATGTGTGTGCGGTTGTGGTCCAAGTGC
GCCCCCCCCCCCCCCGGGAGAACACATGCCGGTGTGTTCCTGGCACTCGC
CTCAGGGGGGAGCACACCATGTATAGGTAGTTGGTGTGTGTGTGTCCGGG
GGACATACACTTGTGACCCGCTTGCCTGTGGGGCAGCACACAGGTGTGTG
CTCTCCCGGGGGGGCGCACTTGGACCCCAACCGCATACATACATACTTCC
CATGATCGGACTCATATCCAAGCACCACAGCCAGCCCCCCTGCTTGATAC
GATGTAGTATACGATGTTGCAATCCCTCACGATCACCTAAGAGAGTGCTC
CTGTGGGCCCTTTCCAAGCTGCATGTTCATGTTCGCCAAATAATGCCTCC
TTTTCAGAATCACTCATCGGAAGGCAGAACTGTTGTGCTTGCCAAGCAGA
ACTGTTTTCGGTCTTTGGCAAACATGAAGATGCAGCTCGGAGAGGATCCA
CAGGAGCACAGGAGTACTGTATTAGGTTGTAGACCCTCCGTACGGCGGGT
AAGCGGCAGACCAATTCATCCGCCCTGTACAAGGCACCCGCCTCATTCAA
TGTATCGAACAACTTGATTCTCCGTTTATGCCGGCCAATTTGACCCGCCT
TGTATTGGGCACCCGCCTTGTATAGGGCACCCGCCTTATATAGGGCACCC
GCCTTATATAGGGCACCCGCCTTATAGAGGGCCTACTGCGATATGTTCTT
GCTGCTGCTGATATTGATCGATTGGTGTTGATGACGTTTTTGGTTGCGAT
TGTTGCTGTCGCATGTGTTTTGGTTGTGATGGCGGTGGTAGCGTTGCTCC
CGAGCGACGGAACTTGCAGCACACGCCACTACCTGCAAACCTACCGCCGA
TGGCAATGAAGTCTTCCCACAATCCTACAAGCTTCCCCCCCACCTCTGAA
GTGTCACGTCATATGCATGCCATGCTGCATAAATTTCCTCCCCTCGCTCG
TGTCATGTGCACCCGTGAAACGCCTAAGTTAGTCGTTCAACGAATGCCCC
GTCATTCTGACCGCTGCTGCTTATGAATCCGCTTTTTGCCTTGTGTGTTA
CGCTGCTGTTCCTCGTGACGCGCATCCTGGTCGTGTGTGACTCCCGCGTC
AAAGCAGCGAGTTCCTTGTCGACAGTAGACGAGACCGAGAGCCTCCCCCG
CCGACAGCGAGGGCGGTTCTCGTCAACCTCGGCGGTGGACAGCAGCAGCG
ATAAGAACGACGGCAGCAGCCGGCATCAGGCGGGAGTGACTCTCTCCTTC
CTGTGCGAG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9546:785..3043-

>mRNA_E_fasciculatus_S2_contig9546.17562.1 ID=mRNA_E_fasciculatus_S2_contig9546.17562.1|Name=mRNA_E_fasciculatus_S2_contig9546.17562.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=591bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9546:785..3043- (Ectocarpus fasciculatus EfasUO2)
ATGCTCGCTCCGTGGCGCGCCCACCGTAAGCTGCGGTCCGCGACTCTGGC
GCTGCAGTGCCGGATGCGGCAGAAGATAGCCTACGGGGAGCTCAGGGATC
TCCGCATCAAGGCCAAGGATGTGGGGAACCTGAAGGGGGACAACGACCGT
CTTAAGGCCGAGGTCCTGGCGCTCAGGCAGGCCGCCGCCGCCTCGAAGGC
TGCGGCGCCTGCAAGCGATGAACAAGTGTCGTCGTCGTCGTCTTCCAGAA
AAGAGGTGGACAGCTTGAGGAGGGAGGTGGTCACGCTAAGGGCCAGGGTG
GCAGAGCTCGAACTCCAGTTGGCGGAAGGAGTGGTCGCCAAGAGCAGAGT
GCCGGCGACCGCGGCGTCGCCGTCGTCGCCGCCGCAGCAGCAACCATCGT
TGCGAACGGCCAAGTCTTATCCGGTGGCACGGGCGGCAGCGAGTTCCTTG
TCGACAGTAGACGAGACCGAGAGCCTCCCCCGCCGACAGCGAGGGCGGTT
CTCGTCAACCTCGGCGGTGGACAGCAGCAGCGATAAGAACGACGGCAGCA
GCCGGCATCAGGCGGGAGTGACTCTCTCCTTCCTGTGCGAG