mRNA_E_fasciculatus_S2_contig9519.17549.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9519.17549.1
Unique NamemRNA_E_fasciculatus_S2_contig9519.17549.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA (polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 563 bits (1450), Expect = 1.290e-180
Identity = 282/299 (94.31%), Postives = 286/299 (95.65%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKKQPSDAFGGAGXXXXXXXXXXASVITNFFISDRCSLCGEQCTRSVCGKCARDPAANCAAFSRLRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHRAMLKGQDAHELCEALGLLS 897
            +GIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMANDPRAEPKYCER+PYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKK P+DAFGG G          ASVITNFFISDRCSLCGEQCTRSVCGKCARDPAANCAAFSRLRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHRA+LKGQDA ELCEALGLLS
Sbjct: 2819 KGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMANDPRAEPKYCERIPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKK-PADAFGGGGKDNGK-----ASVITNFFISDRCSLCGEQCTRSVCGKCARDPAANCAAFSRLRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHRALLKGQDARELCEALGLLS 3111          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA (polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 552 bits (1423), Expect = 5.180e-177
Identity = 279/299 (93.31%), Postives = 282/299 (94.31%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKKQPSDAFGGAGXXXXXXXXXXASVITNFFISDRCSLCGEQCTRSVCGKCARDPAANCAAFSRLRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHRAMLKGQDAHELCEALGLLS 897
            +GIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMA DPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDR LALLGVDVNAWYNDMPRPAPRVSHKAKK P DAFGG G          ASVITNFFISDRCSLCGEQCTRSVC KCAR+PAANCAAFSRLRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHRA+LKGQDA ELCEALGLLS
Sbjct: 2678 KGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMAIDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRTLALLGVDVNAWYNDMPRPAPRVSHKAKKPP-DAFGGGGKRKGK-----ASVITNFFISDRCSLCGEQCTRSVCWKCARNPAANCAAFSRLRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHRALLKGQDARELCEALGLLS 2970          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA (polymerase (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZNX4_AUXPR)

HSP 1 Score: 236 bits (602), Expect = 9.290e-69
Identity = 136/309 (44.01%), Postives = 185/309 (59.87%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTY-ASDVYMPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKKQPSDAFGGAGXXXXXXXXXXASVITNFFISDRCSLCGE--QCTRSVCGKCARDPAANCAAFS-RLRESDLAALQLLEVCRQCTGHPSPELFG-----NDSCGSLECPVFFERHRAMLKGQDAHELCEALGLLSA 900
            +GIETVRRD CP + KM+E+ LRLLFTTKDLSQVK Y  RQWT+IL+ R ++ DF+FAKEVRLGTY A    +PP+A++A++AM+ DPRAEP++ ERV Y+VV G  GARL+D+VV P   +     LRL+  YYITK I PALDR  AL+GVDV AW+  MPRP   + HK   + + A GG             S I  +++S  C++C E    +R +C +C  +P    A  + RL   +     LL +C  C G  +    G     + +C S +C +++ER +A       HEL    G+  A
Sbjct:  431 KGIETVRRDTCPAVAKMMERSLRLLFTTKDLSQVKQYCERQWTKILSGRVSIQDFVFAKEVRLGTYSARHGIIPPAALIATRAMSMDPRAEPRFGERVQYLVVHGAPGARLIDMVVPPSALVEARGRLRLHALYYITKQIVPALDRVFALMGVDVRAWFAGMPRPGLLLPHKRPARDASATGG-------------STIDRYYLSRHCAVCDELTAASRPLCPRCTGEPQLTAAVLAARLNRLERQNRHLLRLCVHCGGGGATGEGGAGDDWSIACTSADCGLWYERRKAW------HELQTVAGMAEA 720          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: Probable (DNA polymerase zeta catalytic subunit n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SLJ2_9CHLO)

HSP 1 Score: 241 bits (614), Expect = 2.240e-68
Identity = 138/299 (46.15%), Postives = 185/299 (61.87%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTY-ASDVYMPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKKQPSDAFGGAGXXXXXXXXXXASVITNFFISDRCSLCG--EQCTRSVCGKCARDPAANCAAFSRLRESDLAALQ--LLEVCRQCTGHPSPELF-GNDSCGSLECPVFFERHRAMLKGQDAHELCE 879
            +GIETVRRD C  + KMLE+ LR+LFT+KD+SQVK Y+ RQWT+IL+ R ++ DF+FAKEVRLGTY A++  +PP+A+VASKA+A DPRAEP+Y ERVPYV+V G  GARL+D+ V+P   +  G  LRL+  YYI K I PAL+R  +LLGVDV  WY  +PRP   +    +K+P+ A G A           A  I  +++S  C++C       R +C +C  +P       S  R + LA  Q  L+ VC  C G    +   G   C SL+C VFFER +A  +   A  LC+
Sbjct: 2446 KGIETVRRDTCSAVAKMLERSLRILFTSKDVSQVKEYVERQWTKILSGRVSLADFVFAKEVRLGTYRAANGLVPPAAMVASKALATDPRAEPRYGERVPYVIVHGEPGARLVDMAVTPHALIESGGRLRLHAHYYINKQILPALERVFSLLGVDVRGWYTALPRPQRLLP---QKRPAAALGLAARGSA------AGTIDAYYLSRHCAVCDGLTHAQRPICEECRMEPQGAAMVLSA-RAARLAGAQALLVRVCLHCGGGGGRKASEGGIVCDSLDCGVFFERRKATDEAAAARVLCD 2734          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA (polymerase (Fragment) n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4F9P8_9CHLO)

HSP 1 Score: 238 bits (607), Expect = 2.960e-68
Identity = 142/276 (51.45%), Postives = 181/276 (65.58%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHK--AKKQPSDAFGGAGXXXXXXXXXX---------------ASVITNFFISDRCSLCGE--QCTRSVCGKCARDPAANCAAFS-RLRESDLAALQLLEVCRQCTG 765
            +GIETVRRD CP + KMLE+ LRLLFT +DL+ VK YL RQWT+IL++R +V DFIFAKEVRLGTY+++   +PP+A+VA+KAMA DPRAEP+Y ERVPYVVV G  GARL+DLVVSP Q +  G  LRLNG YYITK I PAL+R L+L+G DV AW+ DMPRP   +  K  A   P  A G  G XXXXXXXXX                  I  F++S  C +C E  +  + +C +C RDP A+ A  + ++   +     ++ +C  C G
Sbjct:  563 KGIETVRRDSCPAVAKMLEQSLRLLFTARDLTAVKTYLRRQWTKILSNRVSVRDFIFAKEVRLGTYSANAATIPPAAVVATKAMAADPRAEPRYAERVPYVVVHGEPGARLVDLVVSPHQLVESGGSLRLNGTYYITKQIIPALERVLSLVGADVRAWFVDMPRPLRMLPQKRPAGALPLAALGAQGAXXXXXXXXXXXXXFFPGIVGGVVGGGTIDRFYLSRHCVVCDELTRAAQPLCDQCRRDPQASLALLTAQVARLERQHAHMVRICLHCGG 838          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA (polymerase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z9N2_COCSC)

HSP 1 Score: 235 bits (600), Expect = 3.640e-68
Identity = 137/299 (45.82%), Postives = 180/299 (60.20%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTY-ASDVYMPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKKQPSDAFGGAGXXXXXXXXXXASVITNFFISDRCSLCG--EQCTRSVCGKCARDPAANCAAFS-RLRESDLAALQLLEVCRQCTGHPSPE--LFGNDSCGSLECPVFFERHRAMLKGQDAHELCE 879
            +GIETVRRD C  + KMLE+ LR+LF++KD+SQVK Y+ RQWT+IL+ R ++ DF+FAKEVRLGTY A+   +PP+A VAS+AMA DPRAEP+Y ERVPYVVV G  GARL+D+ V+P   +  G  LRL+  YYI K I PAL+R  +LLGVDV  WY  +PRP   +    +K+P+ A G  G          A  I  +++S  C++C       R +C +C  +P       S R      A   L+ VC QC G       L     C SL+C VFFER +A  +   A  LC+
Sbjct:  482 KGIETVRRDTCSAVAKMLERSLRILFSSKDVSQVKEYVERQWTKILSGRVSLADFVFAKEVRLGTYRAAHGLVPPAAQVASRAMATDPRAEPRYGERVPYVVVHGEPGARLVDMAVAPHALIESGGRLRLHAHYYIIKQIVPALERVFSLLGVDVRGWYAALPRPQRLLP---QKRPAAALGLGGRGSA------AGTIDAYYLSRHCAVCDGLTHAQRPICEECRGEPQGAAVVLSARAARLTEAQALLVRVCLQCGGGGGRRGTLEAGIVCDSLDCGVFFERKKATGEAAAARVLCD 771          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA (polymerase zeta catalytic subunit n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H612_SPIPD)

HSP 1 Score: 238 bits (606), Expect = 2.590e-67
Identity = 125/282 (44.33%), Postives = 180/282 (63.83%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKKQPSDAFGGAGXXXXXXXXXXASVITNFFISDRCSLCGEQCTRSVCGKCARDPAANCAAFSR-LRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHRA 843
            +GIETVRRDGCP + K +E+ L++LF T+DLS+VK +LYRQWT+IL+ R ++ DFI AKEV+LGTY++    PP A++++K MA D R+EP+Y ERVPYVVV G  G RL+D VV PE+ L   + L+L+G YYIT+ I PAL R  AL+G DV +W+N+MP+    +   A +   +                   I  ++++  C +C E     +CG CARDP  + +  +R + ES+   +QL  VCR C+GH S  L  + +C SL+CPV++ R +A
Sbjct: 1895 KGIETVRRDGCPAVAKTMEQCLKILFRTQDLSRVKEHLYRQWTKILSGRVSIQDFIIAKEVKLGTYSARGPPPPGALISTKKMAVDGRSEPQYGERVPYVVVHGGPGYRLIDSVVPPEELLNSRT-LQLHGTYYITRQIIPALSRVFALVGADVESWFNEMPKVQRAIQFTASQMRPEL-------QQQLRNGPGQTIDQYYVAKHCLVCHELTHNEICGSCARDPQTSASKLARRISESEKRYIQLQRVCRSCSGH-STALDLDSACISLDCPVYYARVKA 2167          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA (polymerase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTN7_CHLSO)

HSP 1 Score: 237 bits (605), Expect = 3.480e-67
Identity = 139/304 (45.72%), Postives = 180/304 (59.21%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDV-YMPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHK---AKKQPSDAFGGAGXXXXXXXXXXASVITNFFISDRCSLCGE--QCTRSVCGKCARDP----AANCAAFSRLRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHRAMLKGQDAHELCEA 882
            +GIETVRRDGCP +VKM+E VLRLLF TKDLSQVK Y  RQ+++IL  R +V DF+FAKEVRLGTY++   + PP+A VA +AM  DPRAEP++ ERVPYVVV GP  ARL+D+VV P   +  G  LRLN  YYIT+ I PALDR L+L+G D+ AWY DMPRP+  +  K   A      A   A            S I  +++S  C++C E    T+ +C +C   P    A   A + RL       ++L   C    G  + E  G   C SL+C V+FER +   + Q    L +A
Sbjct: 1667 KGIETVRRDGCPAVVKMMEGVLRLLFATKDLSQVKEYCERQFSKILAGRVSVADFVFAKEVRLGTYSTKTAHKPPAAEVALRAMVADPRAEPRFGERVPYVVVHGPPAARLIDVVVPPRALVESGGRLRLNAVYYITRAIIPALDRVLSLVGADLKAWYADMPRPSRMLPQKRPAASLPLLAASNAARQGLQGMPGSKPSTIDKYYLSRHCAVCDELTHATKPLCERCTAQPQLAAAVLAARWGRLERQYAHLVRLCAHCGGGGGRAAAE--GAIVCDSLDCGVYFERRKVWYELQAVAALAQA 1968          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA (polymerase zeta catalytic subunit n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AAG3_AUXPR)

HSP 1 Score: 236 bits (602), Expect = 8.900e-67
Identity = 136/309 (44.01%), Postives = 185/309 (59.87%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTY-ASDVYMPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPAPRVSHKAKKQPSDAFGGAGXXXXXXXXXXASVITNFFISDRCSLCGE--QCTRSVCGKCARDPAANCAAFS-RLRESDLAALQLLEVCRQCTGHPSPELFG-----NDSCGSLECPVFFERHRAMLKGQDAHELCEALGLLSA 900
            +GIETVRRD CP + KM+E+ LRLLFTTKDLSQVK Y  RQWT+IL+ R ++ DF+FAKEVRLGTY A    +PP+A++A++AM+ DPRAEP++ ERV Y+VV G  GARL+D+VV P   +     LRL+  YYITK I PALDR  AL+GVDV AW+  MPRP   + HK   + + A GG             S I  +++S  C++C E    +R +C +C  +P    A  + RL   +     LL +C  C G  +    G     + +C S +C +++ER +A       HEL    G+  A
Sbjct: 1950 KGIETVRRDTCPAVAKMMERSLRLLFTTKDLSQVKQYCERQWTKILSGRVSIQDFVFAKEVRLGTYSARHGIIPPAALIATRAMSMDPRAEPRFGERVQYLVVHGAPGARLIDMVVPPSALVEARGRLRLHALYYITKQIVPALDRVFALMGVDVRAWFAGMPRPGLLLPHKRPARDASATGG-------------STIDRYYLSRHCAVCDELTAASRPLCPRCTGEPQLTAAVLAARLNRLERQNRHLLRLCVHCGGGGATGEGGAGDDWSIACTSADCGLWYERRKAW------HELQTVAGMAEA 2239          
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Match: DNA-directed (DNA polymerase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9D718_ARUDO)

HSP 1 Score: 226 bits (575), Expect = 9.000e-67
Identity = 126/289 (43.60%), Postives = 176/289 (60.90%), Query Frame = 1
Query:    1 QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRAAVGDFIFAKEVRLGTYASDVY-MPPSAIVASKAMANDPRAEPKYCERVPYVVVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALLGVDVNAWYNDMPRPA-PRVSHKAKKQPSDAFGGAGXXXXXXXXXXASV----ITNFFISDRCSLCGE--QCTRSVCGKCARDPAANCAAFS-RLRESDLAALQLLEVCRQCTGHPSPELFGNDSCGSLECPVFFERHR 840
            +GIETVRRD CP + K+LE+ +R++F  +DL++V+ +L RQWTRIL+ + ++ DFIFAKEVRLGTY++    +PP+AIVA+KAM +DPRAEP+Y ERVPYVV+ G  GARL+D+V++P   L  GS  RLN  YYI K I PAL R   LLG D+N W+N+MPRP  P ++ +       +F   G          AS     I  F++S  C +CG+  Q + + C  C ++ A   +  + R  + +     L  +C  C G       G   C SL CPVF+ER +
Sbjct:  156 KGIETVRRDTCPAVAKILERSIRIMFEEQDLTKVRSFLERQWTRILSGKVSIRDFIFAKEVRLGTYSARASTLPPAAIVATKAMLSDPRAEPRYAERVPYVVIHGEPGARLVDMVINPYDLLEVGSPYRLNELYYIVKQIIPALQRVFELLGADLNKWFNEMPRPIRPSLAKRQSASGHGSFSRDGSFIRFGLNKKASTKGGRIDTFYMSSHCLVCGDIIQGSDTFCNNCLKNEAVVASVVAGRTSKLEREIQHLAAICGHCGGADWIVESGV-KCISLACPVFYERRK 443          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9519.17549.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA1.290e-18094.31polymerase zeta catalytic subunit n=1 Tax=Ectocarp... [more]
DNA5.180e-17793.31polymerase zeta catalytic subunit n=1 Tax=Ectocarp... [more]
DNA9.290e-6944.01polymerase (Fragment) n=2 Tax=Auxenochlorella prot... [more]
Probable2.240e-6846.15DNA polymerase zeta catalytic subunit n=1 Tax=Cocc... [more]
DNA2.960e-6851.45polymerase (Fragment) n=2 Tax=Volvox TaxID=3066 Re... [more]
DNA3.640e-6845.82polymerase n=1 Tax=Coccomyxa subellipsoidea (strai... [more]
DNA2.590e-6744.33polymerase zeta catalytic subunit n=2 Tax=Spizello... [more]
DNA3.480e-6745.72polymerase n=1 Tax=Chlorella sorokiniana TaxID=307... [more]
DNA8.900e-6744.01polymerase zeta catalytic subunit n=3 Tax=Auxenoch... [more]
DNA-directed9.000e-6743.60DNA polymerase n=1 Tax=Arundo donax TaxID=35708 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9519contigE_fasciculatus_S2_contig9519:2228..4370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score566.6
Seed ortholog evalue6.8e-159
Seed eggNOG ortholog2880.D7G846
Preferred nameAHDC1
Model size903
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons4
EggNOG free text desc.DNA polymerase activity
EggNOG OGsCOG0417@1,KOG0968@2759
Ec32 ortholog descriptionRibonuclease H-like domain
Ec32 orthologEc-12_001530.2
EC2.7.7.7
Cds size903
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842600.2288423-CDS-E_fasciculatus_S2_contig9519:2227..27911696842600.2288423-CDS-E_fasciculatus_S2_contig9519:2227..2791Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9519 2228..2791 -
1696842600.2500634-CDS-E_fasciculatus_S2_contig9519:3402..35611696842600.2500634-CDS-E_fasciculatus_S2_contig9519:3402..3561Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9519 3403..3561 -
1696842600.2626321-CDS-E_fasciculatus_S2_contig9519:3919..40001696842600.2626321-CDS-E_fasciculatus_S2_contig9519:3919..4000Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9519 3920..4000 -
1696842600.2823927-CDS-E_fasciculatus_S2_contig9519:4271..43701696842600.2823927-CDS-E_fasciculatus_S2_contig9519:4271..4370Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9519 4272..4370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9519.17549.1prot_E_fasciculatus_S2_contig9519.17549.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9519 2228..4370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9519.17549.1

>prot_E_fasciculatus_S2_contig9519.17549.1 ID=prot_E_fasciculatus_S2_contig9519.17549.1|Name=mRNA_E_fasciculatus_S2_contig9519.17549.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=301bp
QGIETVRRDGCPLLVKMLEKVLRLLFTTKDLSQVKGYLYRQWTRILTDRA
AVGDFIFAKEVRLGTYASDVYMPPSAIVASKAMANDPRAEPKYCERVPYV
VVAGPVGARLMDLVVSPEQFLAEGSGLRLNGKYYITKVINPALDRALALL
GVDVNAWYNDMPRPAPRVSHKAKKQPSDAFGGAGGKGKGKGKGKASVITN
FFISDRCSLCGEQCTRSVCGKCARDPAANCAAFSRLRESDLAALQLLEVC
RQCTGHPSPELFGNDSCGSLECPVFFERHRAMLKGQDAHELCEALGLLSA
*
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mRNA from alignment at E_fasciculatus_S2_contig9519:2228..4370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9519.17549.1 ID=mRNA_E_fasciculatus_S2_contig9519.17549.1|Name=mRNA_E_fasciculatus_S2_contig9519.17549.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2143bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9519:2228..4370- (Ectocarpus fasciculatus EfasUO2)
CAGGGCATCGAGACGGTGCGGCGGGATGGCTGCCCCCTGCTGGTGAAGAT GCTCGAGAAGGTGCTTCGGTTGCTCTTCACGACCAAGGATCTCAGCCAGG TGAAGGGAAAGACAAACAAGTGTGCACCCCAGGCGTCTAACCCAGCCCTA GGCCCGACCGCCCGCTGTTGCCACATGACTCTAACTATGCATCACCCCCT ACCGTTTCCCCGAGGATAGCTAACCTTGTACCAGCCGTGGATTCACATCC ATACCGACCCGATAGCCCGAAGCCTTCCCCCTCTACAAACCCTCGGACGC TTAAACCCTCATCGCGTCCCTAATTTTACATACCCTAACCCACTCACCGG AACCTAAACCCTACCCCCAGGTGAAGGGCTACCTGTATCGCCAGTGGACG CGCATCCTCACTGATCGCGCTGCGGTGGGAGACTTCATCTTCGCGAAGGA GGTGTGAATAGGTCGGGGTTGGAGATGGGTTGGGGTTGCGGTGGAGAACG AACCGACGCCGTGCTAATTCAGGAGAGGGATTTGCTTTAGAGCCTAGAGA GAAGATGACCCGTGTTTGTTAGGCGTCTTGTCTCCCCACTGCTTCTACTG CTGGCTGGTGCTGCTACAATATATTTTCCCTACACTAGAAAGAAAAGCAT CCCCCCATCCTACGTGTTCTCCCACCCCCTTCAAACATCGGCCTGTTGCA ACCACCCGTACATGCTAGGGCGCCACCGCCAGTTGCTACCGCCCATCTTT GCTGCGCTTCGAAACGTCATCACGTGCTGCCTAATCGACCTACCATTCGT GGTTGACAGGTCCGACTGGGGACGTACGCAAGCGACGTATACATGCCTCC CTCCGCCATCGTGGCCAGCAAGGCCATGGCGAACGACCCTCGCGCGGAGC CCAAGTACTGCGAGCGCGTCCCTTACGTGGTCGTCGCAGGGCCCGTAGGA GCTCGGCTGATGGATCTGGTGAGGATTTACATCGGGATATGAAGTTCAGG GTCTGTGTGGGGTGTTTTATCGGGAGATCCGTGTCTGTGTATGTCTTCTT CACGATTGTTTGGGGGAGGTTGGAACATACAGCCGGTTTAGCTGACGGAA ATCAGAGGGAATTTCCAAGAGACATGTTCACAACCCGAGAGGAAGGAAGA CGATACAGTATGCTGTATGCTGTATGCTGTATGCTGTATGCGCACGAGGC ACACAAAATCTCGCCCACAAGTGTGAAGTGTATCATCTTGAGAAGGTGTT TTTCCTCGGAGTGAGCCGGACGCCGCCCGACGGCAGCAAGTGGCCTCGGC GACAGAACTATAATAGCCCTGACCCTAACCCTTGAGACATGCACAAAAAA CGCCCAAACCCTTGAGACGGCACCGCTGCCGCAAGTCCAACAACGATCAC GTCCATCCACCCCACTGAAAGCTGAAAGCTGAAAGCAACCAAACAACTCT CAAGAACCACCAAACAACTCTCAAGAACCACCAAACAACTCTCAAGAACC ACCAAACAACTCTCAAGAACCACCAAACAACTCTCAAGAACCCAAAATTC CAATCCAACCGAAAACCGAACCAACCCAGGTGGTGTCCCCTGAGCAGTTC CTCGCCGAGGGCAGCGGTCTCCGCCTCAATGGCAAGTACTACATCACCAA GGTCATCAACCCGGCTCTGGACAGGGCCCTCGCCCTTCTCGGGGTAGACG TTAACGCCTGGTACAACGACATGCCGCGCCCGGCCCCTCGGGTATCCCAC AAGGCCAAGAAGCAGCCCTCCGATGCGTTCGGCGGTGCTGGCGGAAAGGG CAAGGGCAAGGGCAAGGGCAAGGCGAGCGTGATCACGAACTTCTTCATCA GCGACCGGTGCTCGCTGTGCGGGGAGCAGTGCACGAGGTCCGTGTGCGGG AAGTGCGCCAGGGACCCGGCCGCGAACTGCGCCGCCTTCTCTCGGCTGCG AGAGTCGGACCTGGCGGCGCTGCAGCTGCTGGAGGTGTGTCGGCAGTGCA CGGGCCACCCTTCCCCGGAGCTCTTCGGGAACGACTCGTGCGGCTCGCTG GAGTGCCCCGTGTTCTTCGAGAGGCACCGCGCCATGCTCAAGGGCCAGGA CGCGCACGAGCTGTGCGAAGCGCTGGGCCTGCTCTCTGCTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9519:2228..4370-

>mRNA_E_fasciculatus_S2_contig9519.17549.1 ID=mRNA_E_fasciculatus_S2_contig9519.17549.1|Name=mRNA_E_fasciculatus_S2_contig9519.17549.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=903bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9519:2228..4370- (Ectocarpus fasciculatus EfasUO2)
CAGGGCATCGAGACGGTGCGGCGGGATGGCTGCCCCCTGCTGGTGAAGAT
GCTCGAGAAGGTGCTTCGGTTGCTCTTCACGACCAAGGATCTCAGCCAGG
TGAAGGGCTACCTGTATCGCCAGTGGACGCGCATCCTCACTGATCGCGCT
GCGGTGGGAGACTTCATCTTCGCGAAGGAGGTCCGACTGGGGACGTACGC
AAGCGACGTATACATGCCTCCCTCCGCCATCGTGGCCAGCAAGGCCATGG
CGAACGACCCTCGCGCGGAGCCCAAGTACTGCGAGCGCGTCCCTTACGTG
GTCGTCGCAGGGCCCGTAGGAGCTCGGCTGATGGATCTGGTGGTGTCCCC
TGAGCAGTTCCTCGCCGAGGGCAGCGGTCTCCGCCTCAATGGCAAGTACT
ACATCACCAAGGTCATCAACCCGGCTCTGGACAGGGCCCTCGCCCTTCTC
GGGGTAGACGTTAACGCCTGGTACAACGACATGCCGCGCCCGGCCCCTCG
GGTATCCCACAAGGCCAAGAAGCAGCCCTCCGATGCGTTCGGCGGTGCTG
GCGGAAAGGGCAAGGGCAAGGGCAAGGGCAAGGCGAGCGTGATCACGAAC
TTCTTCATCAGCGACCGGTGCTCGCTGTGCGGGGAGCAGTGCACGAGGTC
CGTGTGCGGGAAGTGCGCCAGGGACCCGGCCGCGAACTGCGCCGCCTTCT
CTCGGCTGCGAGAGTCGGACCTGGCGGCGCTGCAGCTGCTGGAGGTGTGT
CGGCAGTGCACGGGCCACCCTTCCCCGGAGCTCTTCGGGAACGACTCGTG
CGGCTCGCTGGAGTGCCCCGTGTTCTTCGAGAGGCACCGCGCCATGCTCA
AGGGCCAGGACGCGCACGAGCTGTGCGAAGCGCTGGGCCTGCTCTCTGCT
TGA
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