mRNA_E_fasciculatus_S2_contig9518.17548.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9518.17548.1
Unique NamemRNA_E_fasciculatus_S2_contig9518.17548.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9518.17548.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9518contigE_fasciculatus_S2_contig9518:5030..5730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size701
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842600.1079173-UTR-E_fasciculatus_S2_contig9518:5029..51711696842600.1079173-UTR-E_fasciculatus_S2_contig9518:5029..5171Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9518 5030..5171 +
1696842600.1273692-UTR-E_fasciculatus_S2_contig9518:5528..57301696842600.1273692-UTR-E_fasciculatus_S2_contig9518:5528..5730Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9518 5529..5730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842600.1178916-CDS-E_fasciculatus_S2_contig9518:5171..55281696842600.1178916-CDS-E_fasciculatus_S2_contig9518:5171..5528Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9518 5172..5528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9518.17548.1prot_E_fasciculatus_S2_contig9518.17548.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9518 5172..5528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9518.17548.1

>prot_E_fasciculatus_S2_contig9518.17548.1 ID=prot_E_fasciculatus_S2_contig9518.17548.1|Name=mRNA_E_fasciculatus_S2_contig9518.17548.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=119bp
MENVHEMFHLSAGDRCFAQYMIFVGIESWLLYLKVPGLIRSLEARPTTSF
QNNDEPGGGQQRTRLPLPFHFLPQQRFSDNSPPSRKNRDRRLLSLWLRHH
LEATIIVLGAQYTIFYSA*
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mRNA from alignment at E_fasciculatus_S2_contig9518:5030..5730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9518.17548.1 ID=mRNA_E_fasciculatus_S2_contig9518.17548.1|Name=mRNA_E_fasciculatus_S2_contig9518.17548.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=701bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9518:5030..5730+ (Ectocarpus fasciculatus EfasUO2)
GGAGAAATAAAGAGTATAAACGACCAAAGGCAACCCAAGTGTTCCGGCGT
TTGGGTCGACCAATGGCTCGACGGATACATGCTCAGCGATTGATGCTGAT
GTCGCGTTCGATAGCCCTTGCGTAGCTTTAGGCTCCGAGCTCATGGAGAA
TGTCCATGAAATGTTTCATCTAAGTGCTGGCGATCGATGTTTTGCACAAT
ACATGATTTTCGTCGGTATCGAATCTTGGCTATTGTACCTAAAGGTGCCG
GGTCTAATTCGTTCCCTTGAAGCTCGGCCTACGACAAGTTTTCAAAACAA
CGACGAACCGGGGGGGGGGCAACAAAGAACAAGATTGCCCCTCCCCTTTC
ATTTCCTCCCGCAGCAGCGATTTTCCGACAACAGCCCCCCATCGCGAAAA
AATCGAGATCGTCGTCTCCTTTCGCTTTGGCTCCGGCATCACCTGGAAGC
CACGATAATCGTGCTTGGGGCACAATACACCATCTTTTATTCGGCTTGAT
GGTTGGGTGTGAAATAGAGCGGTAGCACACACTTCCACATTTGAAGCCAT
GTTCGGAATATTCATTGAAATAAGTGGCCAAATTATTCAAACATAATTCC
ACCCCCCAGGAGACATCGAAAGTTAGCTGTGGATCACATGATTTGGCACG
TTCAGCAACCAGGTCGTCGCGGAGCATAATACCCGTTAGAAAAATGAGGT
T
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9518:5030..5730+

>mRNA_E_fasciculatus_S2_contig9518.17548.1 ID=mRNA_E_fasciculatus_S2_contig9518.17548.1|Name=mRNA_E_fasciculatus_S2_contig9518.17548.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9518:5030..5730+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGAATGTCCATGAAATGTTTCATCTAAGTGCTGGCGATCGATGTTT
TGCACAATACATGATTTTCGTCGGTATCGAATCTTGGCTATTGTACCTAA
AGGTGCCGGGTCTAATTCGTTCCCTTGAAGCTCGGCCTACGACAAGTTTT
CAAAACAACGACGAACCGGGGGGGGGGCAACAAAGAACAAGATTGCCCCT
CCCCTTTCATTTCCTCCCGCAGCAGCGATTTTCCGACAACAGCCCCCCAT
CGCGAAAAAATCGAGATCGTCGTCTCCTTTCGCTTTGGCTCCGGCATCAC
CTGGAAGCCACGATAATCGTGCTTGGGGCACAATACACCATCTTTTATTC
GGCTTGA
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