mRNA_E_fasciculatus_S2_contig9512.17544.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9512.17544.1
Unique NamemRNA_E_fasciculatus_S2_contig9512.17544.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9512.17544.1 vs.
Match: Imm (downregulated 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0P3_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 7.440e-41
Identity = 108/144 (75.00%), Postives = 109/144 (75.69%), Query Frame = 1 
Query:    1 MEKMSSNNPMHINKPSVIWRGGFKMPPHRVSASAHERLRXXXXXXXXXXXXXLXXXXXXXXXXXHRAEAAGAVGDGGRRAGDXXXXGRITIGASSSQILPPSDAVLGPGGIDASRDGRLPGIPNMLDSASAAGRETSGGAGIVG 432
            MEKMSSNNPMHINKPSVIWRGGFKMPPHRV ASAHER RXXXXXXXXXXXXX XXX           E AGAVGDG      XXXX          QILPPSD VLGPGGIDASRDGRLPGIPNMLDS SA GRET GGAG+VG
Sbjct:  741 MEKMSSNNPMHINKPSVIWRGGFKMPPHRVPASAHERQRXXXXXXXXXXXXXXXXX-----------ETAGAVGDGXXXXXXXXXXXXXXXXXXXXQILPPSDEVLGPGGIDASRDGRLPGIPNMLDSTSAGGRETGGGAGVVG 873
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9512.17544.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Imm7.440e-4175.00downregulated 18 n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9512contigE_fasciculatus_S2_contig9512:4784..5215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842599.8737273-CDS-E_fasciculatus_S2_contig9512:4783..52151696842599.8737273-CDS-E_fasciculatus_S2_contig9512:4783..5215Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9512 4784..5215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9512.17544.1prot_E_fasciculatus_S2_contig9512.17544.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9512 4784..5215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9512.17544.1

>prot_E_fasciculatus_S2_contig9512.17544.1 ID=prot_E_fasciculatus_S2_contig9512.17544.1|Name=mRNA_E_fasciculatus_S2_contig9512.17544.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=144bp
MEKMSSNNPMHINKPSVIWRGGFKMPPHRVSASAHERLRQHQHQHQHQHR
QQLQQHQQHQQQQWHRAEAAGAVGDGGRRAGDGGGGGRITIGASSSQILP
PSDAVLGPGGIDASRDGRLPGIPNMLDSASAAGRETSGGAGIVG
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mRNA from alignment at E_fasciculatus_S2_contig9512:4784..5215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9512.17544.1 ID=mRNA_E_fasciculatus_S2_contig9512.17544.1|Name=mRNA_E_fasciculatus_S2_contig9512.17544.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9512:4784..5215+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGAAGATGTCATCGAACAACCCCATGCACATCAACAAGCCGTCGGT
CATCTGGCGGGGGGGGTTCAAGATGCCACCCCACAGAGTCTCAGCAAGCG
CCCACGAACGACTACGGCAGCACCAGCACCAGCACCAGCACCAGCACCGA
CAGCAGCTACAACAACATCAGCAGCACCAGCAACAACAATGGCACCGGGC
TGAAGCAGCCGGGGCGGTTGGAGATGGCGGCCGGCGCGCTGGTGACGGTG
GGGGAGGGGGCAGGATCACCATAGGCGCGTCCTCCTCTCAGATTCTGCCG
CCGTCCGACGCCGTGCTAGGGCCGGGGGGAATCGATGCGTCAAGAGACGG
CAGGTTGCCGGGGATTCCGAACATGCTCGATAGTGCGAGCGCGGCGGGGC
GTGAAACCAGTGGCGGTGCCGGGATTGTCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9512:4784..5215+

>mRNA_E_fasciculatus_S2_contig9512.17544.1 ID=mRNA_E_fasciculatus_S2_contig9512.17544.1|Name=mRNA_E_fasciculatus_S2_contig9512.17544.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9512:4784..5215+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGAAGATGTCATCGAACAACCCCATGCACATCAACAAGCCGTCGGT
CATCTGGCGGGGGGGGTTCAAGATGCCACCCCACAGAGTCTCAGCAAGCG
CCCACGAACGACTACGGCAGCACCAGCACCAGCACCAGCACCAGCACCGA
CAGCAGCTACAACAACATCAGCAGCACCAGCAACAACAATGGCACCGGGC
TGAAGCAGCCGGGGCGGTTGGAGATGGCGGCCGGCGCGCTGGTGACGGTG
GGGGAGGGGGCAGGATCACCATAGGCGCGTCCTCCTCTCAGATTCTGCCG
CCGTCCGACGCCGTGCTAGGGCCGGGGGGAATCGATGCGTCAAGAGACGG
CAGGTTGCCGGGGATTCCGAACATGCTCGATAGTGCGAGCGCGGCGGGGC
GTGAAACCAGTGGCGGTGCCGGGATTGTCGGC
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