mRNA_E_fasciculatus_S2_contig950.17537.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig950.17537.1
Unique NamemRNA_E_fasciculatus_S2_contig950.17537.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig950.17537.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4U3F2_PACTA)

HSP 1 Score: 55.1 bits (131), Expect = 7.230e-5
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 1 
Query:   25 WYFRASSSGLFRGTYNLGYLYEHGLGVPLDYAKALMFYDRARSVPAAMADVDQGLTGMPIQLLIFLAKIRLYLNRACGGRLASLWQRRENE-KGHNSTRDWLPEWFVLAKLSDQF 366
            +Y  ASS    +G++NLGY+YE GLGVP DY  A  +YD A      +   +     +PIQL +   KI+++ +R  G    S     EN  K   +  DW   +  + K +++F
Sbjct:  839 YYQDASSRHSSQGSFNLGYMYEMGLGVPKDYHLAKRYYDLALLSKTMIGKRNDAY--LPIQLALIKLKIKMWFSRLLG----SKGMEDENRTKKRRTWSDWKNLYRSIKKTNNEF 947
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig950.17537.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.230e-533.04protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig950contigE_fasciculatus_S2_contig950:10682..11874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size831
Hectar predicted targeting categoryother localisation
Exons3
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842598.9666824-UTR-E_fasciculatus_S2_contig950:10681..109391696842598.9666824-UTR-E_fasciculatus_S2_contig950:10681..10939Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig950 10682..10939 -
1696842599.0056508-UTR-E_fasciculatus_S2_contig950:11557..116101696842599.0056508-UTR-E_fasciculatus_S2_contig950:11557..11610Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig950 11558..11610 -
1696842599.0172231-UTR-E_fasciculatus_S2_contig950:11798..118741696842599.0172231-UTR-E_fasciculatus_S2_contig950:11798..11874Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig950 11799..11874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842598.976258-CDS-E_fasciculatus_S2_contig950:10939..112791696842598.976258-CDS-E_fasciculatus_S2_contig950:10939..11279Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 10940..11279 -
1696842598.9889047-CDS-E_fasciculatus_S2_contig950:11453..115571696842598.9889047-CDS-E_fasciculatus_S2_contig950:11453..11557Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 11454..11557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig950.17537.1prot_E_fasciculatus_S2_contig950.17537.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig950 10940..11557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig950.17537.1

>prot_E_fasciculatus_S2_contig950.17537.1 ID=prot_E_fasciculatus_S2_contig950.17537.1|Name=mRNA_E_fasciculatus_S2_contig950.17537.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=148bp
MFYDRARSVPAAMADVDQGLTGMPIQLLIFLAKIRLYLNRACGGRLASLW
QRRENEKGHNSTRDWLPEWFVLAKLSDQFESFTRWVGTMWQGPKVSNHVE
INTPYAGRPFRASGIGLAAEDVLLLVSSTLLLVVLFLRWHRRRARRL*
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mRNA from alignment at E_fasciculatus_S2_contig950:10682..11874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig950.17537.1 ID=mRNA_E_fasciculatus_S2_contig950.17537.1|Name=mRNA_E_fasciculatus_S2_contig950.17537.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1193bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig950:10682..11874- (Ectocarpus fasciculatus EfasUO2)
AGGGAGCCAACCCTAGCGTGCTGGTGGTATTTCAGGGCCAGTTCTTCAGG
ATTGTTTCGCGGAACCTACAACCTTGGTGGGTGTTCGTTTACTCGTGTCG
CCACGGGCAAACACCTGTACGTACGTACGCATACAATGAACTCCCATCGC
GCACGCGCGAGATGAGATTGGCCTCTTCTCGATCCCCAAATACAGCGGTT
CAAGGACTAGGCCTCTGGGATTCGCTAAACAGCCTATTTAAATGTGTGCC
CTCCGTCTGTTCAGGATACTTGTACGAACACGGCCTAGGTGTTCCCCTGG
ACTACGCCAAGGCTTTGATGTTCTACGATCGAGCTCGGAGTGTACCTGCT
GCCATGGCTGACGTTGACCAGGGTCTAACCGGGATGCCGATACAGCTGTT
GATTTTTCTGGCGAAGATCAGGTGAATGTACCAAGTCAGCCCTCACTTTC
TTCCGCCGTATCACATCGGCTTCAAAAGCAACTCTCCAATTAATCTTGAT
GCAGGTGTTGATAAAAAATGCACCGCGTGCGCTTGGGTCGGGCTGATGCC
TTTGTCGCTCTGTGTCTCCTTCTTTCCACCGCGCGTTTCGGGAAGATTAT
ACTTGAACCGTGCTTGCGGAGGGCGGTTGGCAAGCCTCTGGCAGCGTCGG
GAGAACGAGAAAGGCCACAACAGCACGCGAGATTGGCTGCCGGAATGGTT
CGTGCTTGCAAAGCTTTCGGACCAATTCGAGTCTTTCACTCGTTGGGTTG
GCACTATGTGGCAAGGTCCTAAGGTATCCAACCACGTCGAGATCAACACG
CCGTATGCTGGCCGACCTTTTCGTGCAAGTGGCATCGGGCTTGCAGCAGA
AGATGTTCTGCTGCTCGTCTCGTCCACCTTGCTGCTTGTTGTGTTGTTTT
TACGTTGGCATAGGCGCCGTGCGAGAAGGCTCTGATGATCATCCCCAAAG
TACTCACAATTAATTGCCTGATGGGTGAGTAAGACCATACCACCTGTTCG
GAGCCTCCTGGCGTGTGCATGTAGACTATGTTGTTTGTAGACACCGGACG
AAGAGATTTCGTGTTTTTTCAAGTCGAAGATCGAAGTAAACTCAATATGT
TAATCACGATGACAAGCGTGGAACATTCAACCATTCCATCCACTCATCCC
GATCTGCACGGACCATGTTGTAGCTATTTCAGCTTTTCCCCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig950:10682..11874-

>mRNA_E_fasciculatus_S2_contig950.17537.1 ID=mRNA_E_fasciculatus_S2_contig950.17537.1|Name=mRNA_E_fasciculatus_S2_contig950.17537.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=444bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig950:10682..11874- (Ectocarpus fasciculatus EfasUO2)
ATGTTCTACGATCGAGCTCGGAGTGTACCTGCTGCCATGGCTGACGTTGA
CCAGGGTCTAACCGGGATGCCGATACAGCTGTTGATTTTTCTGGCGAAGA
TCAGATTATACTTGAACCGTGCTTGCGGAGGGCGGTTGGCAAGCCTCTGG
CAGCGTCGGGAGAACGAGAAAGGCCACAACAGCACGCGAGATTGGCTGCC
GGAATGGTTCGTGCTTGCAAAGCTTTCGGACCAATTCGAGTCTTTCACTC
GTTGGGTTGGCACTATGTGGCAAGGTCCTAAGGTATCCAACCACGTCGAG
ATCAACACGCCGTATGCTGGCCGACCTTTTCGTGCAAGTGGCATCGGGCT
TGCAGCAGAAGATGTTCTGCTGCTCGTCTCGTCCACCTTGCTGCTTGTTG
TGTTGTTTTTACGTTGGCATAGGCGCCGTGCGAGAAGGCTCTGA
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