mRNA_E_fasciculatus_S2_contig950.17536.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig950.17536.1
Unique NamemRNA_E_fasciculatus_S2_contig950.17536.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ9_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 4.390e-148
Identity = 221/235 (94.04%), Postives = 224/235 (95.32%), Query Frame = 2 
Query:   62 MMDRLSFAIFAIAQFATHAFVPATLPQLGIR-ATGLRMCSSPADEGMSRGEVIRSVAAACVAGSTAWSTAVVGVSAKAPAPVMKLPDADDSVKPALRSGGEGSIPPFTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR 763
            MMDRLSF+IFAIAQ  THAFVPAT P LG+R ATGLRMCSSPADEGMSRGEV+RSVAAACV GSTAWST  VGVSAKAPAPVMKLPD DDS KPALRSGGEGSIPPFTVLPSGVQITDIVAGDGPVAD GKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR
Sbjct:    1 MMDRLSFSIFAIAQLVTHAFVPATFPHLGVRRATGLRMCSSPADEGMSRGEVLRSVAAACVTGSTAWSTTAVGVSAKAPAPVMKLPD-DDSAKPALRSGGEGSIPPFTVLPSGVQITDIVAGDGPVADTGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR 234
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL48_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.430e-45
Identity = 85/156 (54.49%), Postives = 111/156 (71.15%), Query Frame = 2 
Query:  305 MKLPDADDSVKPALR--SGGEG-SIPPFTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR 763
            + LP  ++   P L+  SG E  ++P F  LPSGV+ITDI  G+G     G  V+L+WV+RRSNGY+V SSE    +PFIYRVGDA++AIKG D+GIRGMK GG RR++VPPELGYV+G  D  PGP+P G GP++Q+  R  EP  FEV+++ VR
Sbjct:  193 VNLPVVEEFDTPQLKGLSGDENPNLPQFRALPSGVRITDIQVGNGAEVKEGSTVSLQWVLRRSNGYFVDSSEAHNYDPFIYRVGDAQKAIKGFDEGIRGMKQGGKRRMIVPPELGYVQGAADNKPGPVPTGYGPQRQVTNRKNEPFFFEVEVSHVR 348
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCU4_FISSO)

HSP 1 Score: 137 bits (344), Expect = 2.000e-34
Identity = 71/137 (51.82%), Postives = 94/137 (68.61%), Query Frame = 2 
Query:  377 FTVLPSGVQITDIVAGDGP-VADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQI----NTRNKEP---LTFEVKLTKVR 763
            +  LPSGV   D+  G G  +A+ G  V L+WV+RRSNGY+V SSE   G PFI+ VGD K AI+G+D+G++GMK GG RRI++PP L YVEG +DG PGP+P G GP+QQ+    N R   P   +  EV+LT++R
Sbjct:   39 YKKLPSGVVYADLRPGSGTEMAEQGSRVNLQWVLRRSNGYFVDSSERNDGVPFIFEVGDGK-AIQGIDEGVQGMKVGGVRRILIPPALAYVEGLEDGKPGPLPAGFGPRQQMRRVMNVRKDVPGEYVFLEVQLTRLR 174
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J203_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.490e-34
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 2 
Query:  386 LPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQI 709
            LPSGV   D+  G G V + GK V ++WV++RSNGY+V SS    G PFI+ VGD K A+ G+D+GIRGM+ GG RRI+VPP L YVEG +DG PGPIP G GPKQ++
Sbjct:  106 LPSGVMYVDLRPGSGDVVEEGKRVNVQWVLKRSNGYFVDSSSNNDGVPFIFTVGDPKGAMAGVDEGIRGMRVGGIRRIIVPPNLAYVEGVEDGKPGPIPAGFGPKQRM 213
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0A9_THAPS)

HSP 1 Score: 136 bits (342), Expect = 4.410e-33
Identity = 73/136 (53.68%), Postives = 85/136 (62.50%), Query Frame = 2 
Query:  377 FTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQIN----TRNKEP---LTFEVKLTKVR 763
            +  L SGV   DI AG G     G  V L+WV+RRSNGY+V SS      PFI+ VGD K AI GLD  +RGMK GGTRRI++PP+L YV G  DG PGPIP G GP+QQ+      R   P   +  EVKLTKVR
Sbjct:  128 YNKLESGVIYADINAGSGETVKEGSRVNLQWVLRRSNGYFVDSSAVSDSVPFIFTVGDPKGAIAGLDQAVRGMKVGGTRRILIPPKLAYVGGVDDGKPGPIPAGFGPRQQMRRVMEVRKDVPGEYIFLEVKLTKVR 263
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3Y4_FISSO)

HSP 1 Score: 134 bits (337), Expect = 8.840e-33
Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 2 
Query:  377 FTVLPSGVQITDIVAGDGP-VADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQI----NTRNKEP---LTFEVKLTKVR 763
            +  LPSGV   D+  G G   A  G  V L+WV+RRSNGY+V SSE   G PFI+ VGD K AI+G+D+G+RGMK GG RRI++PP L YVEG +DG PGP+P   GP+QQ+    N R   P   +  EV+LT++R
Sbjct:   92 YKKLPSGVVYADLRPGSGTETAQQGSRVNLQWVLRRSNGYFVDSSERNDGVPFIFEVGDGK-AIQGIDEGVRGMKVGGVRRILIPPSLAYVEGLEDGKPGPLPACFGPRQQMRRVMNVRKDVPGEYVFLEVQLTRLR 227
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2F1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 8.980e-33
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 2 
Query:  386 LPSGVQITDIVAGDGP-VADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQIN----TRNKEP---LTFEVKLTKVR 763
            LPSGV   D+  G G  VA  G  V ++WV+R+SNGY+V SSE   G PFI+ VGD   AI G+D+GIRGMK GG RR+++PP+  YV G +DG PGP+P G GPKQQ+      R   P   +  E++LT++R
Sbjct:   14 LPSGVIYADLRVGSGEEVASEGSRVNIQWVLRKSNGYFVDSSEVSDGVPFIFTVGDKSGAIAGVDEGIRGMKVGGVRRLLIPPKFAYVTGVEDGKPGPVPAGFGPKQQMRRVMEVRRDVPGEYIFLEIQLTRLR 147
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4F5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 6.140e-31
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 2 
Query:  377 FTVLPSGVQITDIVAGDGP-VADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQIN----TRNKEP---LTFEVKLTKVR 763
            +  LPSGV   D+  G G  VA  G  V ++WV+R+SNGY+V SSE   G PFI+ VGD   AI G+D+GIRGMK GG RR+++PP+  YV G +DG PGP+P G GPKQQ+      R   P   +  E++LT++R
Sbjct:  186 YKKLPSGVIYADLRVGSGEEVASEGSRVNIQWVLRKSNGYFVDSSEVSDGVPFIFTVGDKSGAIAGVDEGIRGMKVGGVRRLLIPPKFAYVTGVEDGKPGPVPAGFGPKQQMRRVMEVRRDVPGEYIFLEIQLTRLR 322
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UST0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.100e-30
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 2 
Query:  377 FTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQIN----TRNKEP---LTFEVKLTKVR 763
            +  LPSGV   D+  G+G  A  G    ++WV+R+SNGY+V SSE   G PFI+ VGD   AI G+D+GIRGMK GG RR+++ P+  YV G +DG PGP+P+G GPKQQ+      R   P   +  E++LT++R
Sbjct:  128 YKKLPSGVIYADLRVGNGEEAVEGSRANIQWVLRKSNGYFVDSSEVSDGVPFIFTVGDKNGAIAGVDEGIRGMKVGGVRRLLIQPKYAYVTGVEDGKPGPLPVGFGPKQQMRRVMEARKDVPGEYIFLEIQLTRIR 263
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y8I9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.370e-30
Identity = 65/136 (47.79%), Postives = 88/136 (64.71%), Query Frame = 2 
Query:  377 FTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQI----NTRNKEP---LTFEVKLTKVR 763
            +  LPSGV   D+  G   VA  G  V L+WV+R+SNGY+V SSE     PFI+ +GD   AI G+D+ +RGMK+GG RRI++PP L YV+G +DG PGP+P G GP+QQ+    N R   P   +  EV+ T++R
Sbjct:   99 YKKLPSGVIYADLRQGKDVVASEGSKVNLQWVLRKSNGYFVDSSERNADVPFIFTIGDGT-AIAGVDEAVRGMKAGGVRRILIPPSLAYVQGLEDGKPGPLPYGFGPRQQMRRVQNVRADVPGEYIFLEVQATRIR 233
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig950.17536.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidylprolyl4.390e-14894.04isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI... [more]
Peptidylprolyl1.430e-4554.49isomerase n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
Peptidylprolyl2.000e-3451.82isomerase n=1 Tax=Fistulifera solaris TaxID=151956... [more]
Peptidylprolyl4.490e-3458.33isomerase n=1 Tax=Odontella aurita TaxID=265563 Re... [more]
Peptidylprolyl4.410e-3353.68isomerase n=1 Tax=Thalassiosira pseudonana TaxID=3... [more]
Peptidylprolyl8.840e-3351.82isomerase n=1 Tax=Fistulifera solaris TaxID=151956... [more]
Peptidylprolyl8.980e-3350.00isomerase n=1 Tax=Helicotheca tamesis TaxID=374047... [more]
Peptidylprolyl6.140e-3148.91isomerase n=1 Tax=Helicotheca tamesis TaxID=374047... [more]
Peptidylprolyl1.100e-3047.06isomerase n=1 Tax=Ditylum brightwellii TaxID=49249... [more]
Peptidylprolyl1.370e-3047.79isomerase n=1 Tax=Grammatophora oceanica TaxID=210... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig950contigE_fasciculatus_S2_contig950:6347..10740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score433.3
Seed ortholog evalue7.1e-119
Seed eggNOG ortholog2880.D7FIZ9
Model size1512
Hectar predicted targeting categorychloroplast
Exons7
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
Ec32 ortholog descriptionPlastid FKBP domain protein
Ec32 orthologEc-07_004980.1
Cds size705
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig950.17536.1prot_E_fasciculatus_S2_contig950.17536.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig950 6408..9994 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842599.1134322-UTR-E_fasciculatus_S2_contig950:6346..64071696842599.1134322-UTR-E_fasciculatus_S2_contig950:6346..6407Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig950 6347..6407 +
1696842599.2074075-UTR-E_fasciculatus_S2_contig950:9994..107401696842599.2074075-UTR-E_fasciculatus_S2_contig950:9994..10740Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig950 9995..10740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842599.1273656-CDS-E_fasciculatus_S2_contig950:6407..65391696842599.1273656-CDS-E_fasciculatus_S2_contig950:6407..6539Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 6408..6539 +
1696842599.137783-CDS-E_fasciculatus_S2_contig950:6958..70851696842599.137783-CDS-E_fasciculatus_S2_contig950:6958..7085Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 6959..7085 +
1696842599.148203-CDS-E_fasciculatus_S2_contig950:7589..76651696842599.148203-CDS-E_fasciculatus_S2_contig950:7589..7665Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 7590..7665 +
1696842599.1620066-CDS-E_fasciculatus_S2_contig950:7945..80901696842599.1620066-CDS-E_fasciculatus_S2_contig950:7945..8090Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 7946..8090 +
1696842599.1733844-CDS-E_fasciculatus_S2_contig950:8503..85961696842599.1733844-CDS-E_fasciculatus_S2_contig950:8503..8596Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 8504..8596 +
1696842599.1846662-CDS-E_fasciculatus_S2_contig950:9139..92441696842599.1846662-CDS-E_fasciculatus_S2_contig950:9139..9244Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 9140..9244 +
1696842599.1959076-CDS-E_fasciculatus_S2_contig950:9967..99941696842599.1959076-CDS-E_fasciculatus_S2_contig950:9967..9994Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig950 9968..9994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig950.17536.1

>prot_E_fasciculatus_S2_contig950.17536.1 ID=prot_E_fasciculatus_S2_contig950.17536.1|Name=mRNA_E_fasciculatus_S2_contig950.17536.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=235bp
MMDRLSFAIFAIAQFATHAFVPATLPQLGIRATGLRMCSSPADEGMSRGE
VIRSVAAACVAGSTAWSTAVVGVSAKAPAPVMKLPDADDSVKPALRSGGE
GSIPPFTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSE
EGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKD
GNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig950:6347..10740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig950.17536.1 ID=mRNA_E_fasciculatus_S2_contig950.17536.1|Name=mRNA_E_fasciculatus_S2_contig950.17536.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4394bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig950:6347..10740+ (Ectocarpus fasciculatus EfasUO2)
CCTCCTGTTCCTCCTCGGTCGTCTTGCTCACTTCCGGTGCACACGAATCC
TGACCACAGAGATGATGGATCGATTGAGTTTCGCCATTTTCGCCATTGCC
CAGTTCGCGACACATGCTTTTGTCCCCGCTACACTCCCGCAGTTGGGTAT
TCGTGCAACCGGACTGCGCATGTGTTCCTCTCCTGCTGACGAGGTGTGTG
TACGACGCTGTGTAGTTGAATAATGTCATTTCTATTTGCCAATGTCTGGC
CAGAGGGCCACGTGCTACAGGTGTTTGCCCCGTCCTTGCCGTTATTCCAG
GGAAAGAACTAGGGCATGTCCCGCGACCTGTAAATGATGTGATCGCTAAA
CCGTCTCCAGATATCCATGCCGAGCAACAGATCATCTTGCAGCAACGCGT
ACCGCGAGGACTTCTTTGTGTCCCAGTTTCACCAGGAAGGCGCAACATCT
CAGACCAACGGGTCTGTTGTGCACAGATTCTAGATATCAGAAAGTTTAGT
TGCAGGTTTGTTTGCAATGCGCATGGAGTCGAGTGTTCCCGTGATGCACA
CGACCCGCCGAGGATGTCTTCGCTTTGCTTCCCGGCACAACAACGGTGCA
TGTTTGTGCCAGGGCATGTCACGAGGAGAAGTAATACGCAGCGTAGCTGC
AGCCTGTGTGGCCGGGAGTACGGCTTGGAGTACTGCCGTTGTCGGGGTAT
CAGCCAAGGCGCCTGCACCAGTCATGAAGCTTCCGGACGGTGAGGAACGG
GCGTTTTCCCTTGGCTGAACGCGATGTTTTGTCTCCATGGCAGAAAGAAA
CGAAGTCAGGTCATACAATATATCGAATGTATCGAATGTTGTGACACACA
CCGTCGATAATTGATGGACAATCTCTGCGATCTGATTGATCCGAAAAGAA
GATTTGGCGTTGTTGATAAATGTGTCTTTACGAAAGCTTGGCTCACGAGA
ACGGGAGGAAGCACGAATCGGGTATGCTGTGGTATGGGTACGCTCTAGTC
AACAACGCTCTCATGTTGAGAATGGTATCTACCAATACAGCAGTTGTGAG
ACGCAGCCAAACCAGCCACACTAAGTCTCGGCCCGCGTGTGCGAAAGTCC
AAGAATTTGTCAGGTTTGACAAACTGACGTTACTTGACTCAAACGATCAG
CGTATAGGTGCAGTACCAATGCTTTCCGTCTTATGCGGCTCCCTCAGGTC
TTCACCCCTCGCCTTTACGCGTGGTATGTTGCGTTCTGTGGAGCAGATGA
CAGTGTGAAGCCGGCACTGCGTAGCGGAGGCGAAGGAAGCATCCCACCCT
TCACGGTCCTCCCATCAGGGTAACCTCAAAATAGAATTTAGGGTGTTCAA
ATGTTTTTGGACAAATGGAGTTGTTCGCCGCGCTTCCCATGAGCTAGAGA
AGGGTATCGTTCCGTGCCTTTTCCTCCTTGCGCTAGCGCCGCATCCGTTC
GTGCTTGAAACTGGGGGTTCACCTCTGATACGTGCTCTTGGGGGCTGAAG
GCTCGTTTTGCTTGCTCTTTGCAGCAGCGTACATTAGTTGGGACAGTGGG
AATGTTTCTAACCCTCCTTGTTCCACGCCGCTCGCGGTCGATTGCCCAGG
GTCCAGATTACCGACATTGTTGCCGGTGATGGACCTGTTGCCGACGCCGG
CAAGGGTGTCACCCTGAAGTGGGTTATGCGCCGCTCGAACGGCTACTACG
TCAGTTCTTCCGAGGAGGGAGGAGGCGAGCCTTTCATCTACAGGGTGAGC
GAGACGCCTTTGGGAGAAAGCTGAGATTGACAAGCAACACACGATGTTTT
CCTTGGTATTGTTCAGAGTTACGGTTGAAAGTTGGGATCGGTGCACGGTG
AACCTATGTAGGTGAGGATGATGTTCCTATCCCACCGTTTGTATATGCAA
GCGTTTGAGAATTGCTAAGAGGGGAGGTTGCATTGTACGTGTGGCGAGCG
GCGGAAATGTTCGTTATCGATGGATTGACAATGGCTGGATGTTAAATGGT
ATCAGGGTCTTCTGCACCGCGGCACAGATCTACGAAATATCTGTTGCTCA
CGGTGAACGCTGGAAGCAAGCACGAACCGAGGTGACAGAGGGAGAGAGAG
AATGTTGAAGAGAGGGGGCTAATACGAACTATCCTGTTGTTGATTTTCTT
CTCCCAGGTGGGTGACGCGAAGCGAGCCATCAAGGGTTTGGACGATGGGA
TACGAGGAATGAAAAGCGGTGGCACTAGGCGCATCGTGGTACCACCTGAG
GTGAGTACTGCCTGCTCTCGGGCACGCCGCGGACATTGGAGTGTTACTTC
GATGACCCTGAATACGCAGTACCTCCAAGTACAGCACCGAGGTCGCTGAG
TTTGAGATAGATTCATGCCCATTCGTAAAGATATCGTAGTGTGATGCGAG
TTGTAGAAGCGCCCTCGGCAGGGAGCAAGTGGCAAGGTACTCTTCCTTTG
CATACATCTTTCAACAAGTCCTCTGTTGCGAAAAGCCCTTCCGCGTGAAC
GCTTAATATGCGATCCACCTCGTCAAGCAGATAGACAGGGAGCATGCAAG
CCCTGGAGTGAACAATGGTACATCGCAAGTGAATTAGGTACTTGTCTAAA
AAATATGGTACCGTCCTAAACTAGGCTTGTTGAAAGTAGGACAGAAGAGC
AACCGCCCCACCAAGTATTAGGGAATCAGCGCAATGTTGCCTGGCATACC
TTCCTTCATTGCTTCCTACTCTGCACAAAAGTTGCCGGTGAACGTGTGTG
TGCTGCTGGGCCTCTTGTGGTTTTTGTCACCCACAATGCGCAGCTGGGCT
ATGTTGAAGGATGCAAGGACGGAAATCCGGGGCCGATCCCGATGGGCCTG
GGGCCGAAGCAGCAGATCAACACCCGCAACAAGGAGCCCCTGACTTTCGT
GAGTGCTGCCAGGTTGTCGGCGGTTCATGCTCGAGTTAATCACCAGGCCT
TGATGGGCAATGTTTCGCCAAGAAGAGCACGCCCTGTCTATGTTTGTAGT
GTTTTTACTAAGACCCACCCTTGTTCTTCGATGGTGTAGGTGTAGAATAC
ACCGGCGTGGGCATCACGCTTGAAGCGCTACAATAAACACCACGTGCAAC
CCAGCAGCAACATCTCGCTTCAACAGCACAGACACCAATGCGTGGGGTGC
TGAATGGGACAGTGCATGGGGCAAGAGATGGCGAAAGAAACATCCAGCCG
TAGACCGAACTATGGGACTTCGCTTTTTTGTTTCCCATCTGTGCAGAGTG
TTCCATTTGCTTCCCGACACAGTAGCCGCAAGCGCTGTGGCGAGTACACC
GCGGCAGCTTTGCGAGATTGCTGCAAGTCTGGCTTTTGAAGACATTCCAA
ACCTCGATCACTTGTTGCGACAATCATGCACGTTCACTTCTTCTATCGAT
TTGTGGTATGTGTCGAAGTTGGGCAAACTTCGAGTGCTACGAATGACGTG
CTTCAAAAACACATGTAAACAAAAAACAAGCGAGTGTTTTTGGGGCATGT
ACTGTTGGTCTGGATCAGGGTGAGATACATCTTCACCGCCGTATCCCCAC
ACCGTCATGGCGCGGCGTACCCCACAGTTTCCTGTCCTGTCTAACCGCTG
ATTGCTTGCTTTGGTTGGCAGGAGGTGAAATTGACCAAGGTTCGATAACG
CGTGGAAGGAAGAAAAAAGAGAAATCTGCTGCCGCGTCAACGGTCATCAG
ATTACTGCTGTACCTTTGACTGTGAACACGGCACGCTTGTTGGCATCGAG
TATATAAGCTTGCGTGCAATAGAAACATGATTAGACACTACGGGCGGTAA
GATTTTCTTTGTTTTAGTAGGTTGTGGACGAAACAAGGAAGAAACACAGC
CTTCGCTGAGAGGCATGGGATTATTGTTAGACGGGATAGCAGAGTCGGCA
GGACTGCCAAAAACGACGAATGCATGCAGAAATTGACAACTCGGGCGGAT
GAAAGCAGCTGTACGTCAGAGGTTGCCAATGGGCAACCTTTATCAAAACT
TCCGTAGAAAGAATGGCAGAAACGTTTGACGCTTTGGGGGCTCCACCGCC
GAATCGTAGGCGGTTATTTTCAGACGGACGTGTCAAAACATTGCAGAAAG
GGCATCGGGGAACCCTGGAATCGCAATATATACTGCTCTTCGCGCGAGAG
CATCCTCAAGCTTGGCGCTGGTTTTCCAGGCCTTGTCGTTTGTCGGTCAC
GGGTCAGTCATGCAAAAAATATTTTGTGCAGTCTCATTCATTTAGCTAAG
AATACATCTGTGACCTAGAAGGTTCAGTCTACCTATGCGATGGCACACTT
CTACTTAGTTTGCCGCCGCACATGGGATTCTTGTTGGGGGGAAAAGCTGA
AATAGCTACAACATGGTCCGTGCAGATCGGGATGAGTGGATGGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig950:6347..10740+

>mRNA_E_fasciculatus_S2_contig950.17536.1 ID=mRNA_E_fasciculatus_S2_contig950.17536.1|Name=mRNA_E_fasciculatus_S2_contig950.17536.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=705bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig950:6347..10740+ (Ectocarpus fasciculatus EfasUO2)
ATGATGGATCGATTGAGTTTCGCCATTTTCGCCATTGCCCAGTTCGCGAC
ACATGCTTTTGTCCCCGCTACACTCCCGCAGTTGGGTATTCGTGCAACCG
GACTGCGCATGTGTTCCTCTCCTGCTGACGAGGGCATGTCACGAGGAGAA
GTAATACGCAGCGTAGCTGCAGCCTGTGTGGCCGGGAGTACGGCTTGGAG
TACTGCCGTTGTCGGGGTATCAGCCAAGGCGCCTGCACCAGTCATGAAGC
TTCCGGACGCAGATGACAGTGTGAAGCCGGCACTGCGTAGCGGAGGCGAA
GGAAGCATCCCACCCTTCACGGTCCTCCCATCAGGGGTCCAGATTACCGA
CATTGTTGCCGGTGATGGACCTGTTGCCGACGCCGGCAAGGGTGTCACCC
TGAAGTGGGTTATGCGCCGCTCGAACGGCTACTACGTCAGTTCTTCCGAG
GAGGGAGGAGGCGAGCCTTTCATCTACAGGGTGGGTGACGCGAAGCGAGC
CATCAAGGGTTTGGACGATGGGATACGAGGAATGAAAAGCGGTGGCACTA
GGCGCATCGTGGTACCACCTGAGCTGGGCTATGTTGAAGGATGCAAGGAC
GGAAATCCGGGGCCGATCCCGATGGGCCTGGGGCCGAAGCAGCAGATCAA
CACCCGCAACAAGGAGCCCCTGACTTTCGAGGTGAAATTGACCAAGGTTC
GATAA
back to top