mRNA_E_fasciculatus_S2_contig948.17512.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM84_ECTSI) HSP 1 Score: 682 bits (1761), Expect = 3.980e-217 Identity = 494/667 (74.06%), Postives = 501/667 (75.11%), Query Frame = 2
Query: 2 TALSERSSTLRRTYSSALSSVARLAPAAGVSRLAGRLAQLFREADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGGKAATGGVKEEGTSXXXXXXXXXXFAASGWNQVLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAAGKGSAITLEPFVWGGEGXXXXXXXXXXGVKRNXXXXXXXXXXXXXXXXXXXXXSSSGQLEESSSATAGAEGIVRGTDGAASSSSDGDNETTDGIPGGTDDGPAFEYKDKVGDLDKDAAGPAAAAPGGAVQAQREDDQPRKDAALEAGLASLDMEDDSPTPFGDVVTLMLSQLRRKDNKFGRAAASSLAALLDAFPECCVYDLVAPTLLDLAGLDGAAXXXXXXXXXXXXXXXKEDPIMQARAVACLAAAWPRVPAPXXXXXXXXXXXXXXXXXXXXXXXG-----------RTDAVCNVQRAHAASLTRALSGAILLKVWSVRVPIYGALSAIVSRTTTAAESRAPVLTGSLLADVVQAVELGADDAKYSQVRAAAISVVGAMTCRKELRLALMPHKEGLAAAARTAAQDPEPKVAVVGSKAAQNLSWWP 1969
TALSERSSTLRRTYSSALSSVARLAPAAGVSRLA RLAQLFREADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGGKAATGGVKEEG S FAASGWNQVLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLM + SR KR RT E + GE XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX NE TDG PGGTDDGPAFEYKDKVGDLD+DAAGPAAAAPG AVQAQRED QPRKDAALEAGLASLDMEDDSPTPFGDVV LMLSQLRRKD KFGRAAASSLA LLDAFPECCVYDLVAPTLL+LAGLDGAA XXXXXXXXXXX PIMQARAVACLAAAWPRVPA XXXXXXXXXXXXXXXXXXXXXXX R DAVCNVQRAHAASLTR LSGAILLKVWSVRVPIYGALSAIVSRTT AAESRAPVLTGSLLADVV+AVELGA+DAKYSQVRAAAISVVGAMTCRKELRLAL PHKEGLA AARTAA+DPEPKVAV GSKAAQNLSWWP
Sbjct: 1729 TALSERSSTLRRTYSSALSSVARLAPAAGVSRLASRLAQLFREADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGGKAATGGVKEEGASGGGG------FAASGWNQVLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLM-------------ASSRGVKRN-----------------------------------RTSEHE---------------------------GEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------NEATDGTPGGTDDGPAFEYKDKVGDLDRDAAGPAAAAPGEAVQAQREDGQPRKDAALEAGLASLDMEDDSPTPFGDVVALMLSQLRRKDTKFGRAAASSLAVLLDAFPECCVYDLVAPTLLELAGLDGAAAGXXXXXXXXXXX-----PIMQARAVACLAAAWPRVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXARQADATTTRIDAVCNVQRAHAASLTRVLSGAILLKVWSVRVPIYGALSAIVSRTTAAAESRAPVLTGSLLADVVRAVELGAEDAKYSQVRAAAISVVGAMTCRKELRLALTPHKEGLAGAARTAAEDPEPKVAVEGSKAAQNLSWWP 2283
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: Proteasome (stabiliser-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR0_9STRA) HSP 1 Score: 178 bits (451), Expect = 6.330e-42 Identity = 244/688 (35.47%), Postives = 309/688 (44.91%), Query Frame = 2
Query: 5 ALSERSSTLRRTYSSALSSVARLAPAAGVSRLAGRLAQLFREADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGGKAATGGVKEEGTSXXXXXXXXXXFAASGWNQVLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACR-------VRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAAGKGSAITLEPFVWGGEGXXXXXXXXXXGVKRNXXXXXXXXXXXXXXXXXXXXXSSSGQLEE---SSSATAGAEGIVRGTDGAASSSSDGDNETTDGIPGGTDDGPAFEYKDKVGDLDKDAAGPAAAAPGGAVQAQREDDQPRKDAALEAGLASLDMEDDSPTP----FGDVVTLMLSQLRRKDNKFGRAAASSLAALLDAFPECCVYDLVAPTLLDLAGLDGAAXXXXXXXXXXXXXXXKED----------------PIMQARAVACLAAAWPRVPAPXXXXXXXXXXXXXXXXXXXXXXXGRTDAVCNVQRAHAASLTRALSGAILLKVWSVRVPIYGALSAIVSRTTTAA--ESRAPVLTGSLLADVVQAVEL--GADDAKYSQVRAAAISVVGAMTCRKELR---LALMPHKEGLAAAARTAAQDPEPKVAVVGSKAAQNL 1957
ALSERS+ +R +Y+SAL++VARLAPA V+ LA RL +LF ++ D + QR A LL +L RA A GG EG + SGW LP+A+VA D D VA AFA W EGLTQLQLGAAG VRG A L+L I AE+ A+ SR + + + G LGE+++G ++ +L VPGR WE KE LLEAVV + +G +E + G EGXXXXXXXXXX XXXXXXX + E S +AT+G E + DG GG+ A Y+DK+GDL A +A+ D + + +P P +G+VV L++ QL R+ RAAASS+AAL AFPEC + APTLL A L XXXXXXXXXXXXXXX P+MQARAV L AAWPR G + A+ +VWSVRV + + I+ AA ++ A G L V AV G D KYS VR AA A+ L+L+P KE L AR AA D + VA +G+KA Q L
Sbjct: 1840 ALSERSAAVRASYTSALAAVARLAPAPLVAPLARRLCRLFAASNEDLEGGQRAAAAALLRELAARA---------PEAMGGRGSEGE-----------WRRSGWAAALPLAYVARHDADAAVAAAFATVWDEGLTQLQLGAAGXXXXXXXXXXXXSVRGEAGACALLLAPIAAEIVGALGGTSRGGRLRAAAAXXXXXXXXGARLGEDAAGAEVLGALLRAVPGRAWERKEALLEAVVKVAVECRGG---MELSMRGAEGXXXXXXXXXXXXXXXXXXXXXXAELESDAPGAVNNGVADAPAEAGGGSGAATSGTEDXXXXXXXXXXXXXXXE----DGADGGS---AAAAYEDKLGDL--------------AAEAEPMDXXXXXXXXXXXXXGA--QQAAAPAPPRIAYGEVVGLLVRQLGRQSKLVRRAAASSVAALAPAFPECDTFAAAAPTLLRAALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVMQARAVEALTAAWPR---------------------------GAGGXXXXXXXXXXXXXXXXXAAALPTRVWSVRVQLLRLIKTILEAGFGAATADAAAAASCGRALPAVAPAVASAGGIGDLKYSAVRVAAAEAALALASVSPAGPGGLSLVPFKEALQDVARVAAADGDASVASLGAKAQQAL 2454
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRQ8_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 8.980e-11 Identity = 171/687 (24.89%), Postives = 253/687 (36.83%), Query Frame = 2
Query: 5 ALSERSSTLRRTYSSALSSVARLAPAAG-VSRLAGRLAQLFRE-ADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGGKAATGGVKEEGTSXXXXXXXXXXFAASGWNQVLPVAFVASKDPDK----PVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAAGKGSAITLEPFVWGGEGXXXXXXXXXXGVKRNXXXXXXXXXXXXXXXXXXXXXSSSGQLEESSSATAGAEGIVRGTDGAASSSSDGDNETTDGIPGGTDDGPAFEYKDKVGDLDKDAAGPAAAAPGGAVQAQREDDQPRKDAALEAGLASLDMEDDS--PTPFGDVVTLMLSQLRRKDNKFGRAAASSLAALLDAFPECCVYDLVAPTLLDLAG-LD---GAAXXXXXXXXXXXXXXXKEDPIMQARAVACLAAAWPRVPAPXXXXXXXXXXXXXXXXXXXXXXXGRTDAVCNVQRAHAASLTRALSGAIL---LKVWSVRVPIYGALSAIVSRTTTAAESR--------------------APV---LTGSLLADVVQAVELGADDAKYSQVRAAAISVVGAMTCRKELRL--ALMPHKEGLAAAARTAAQDPEPKVAVVGSKA 1945
AL+ERSST +R + SAL+ VA+LAP V R RL + +R AD + QR + L L LC AG L EE + W VLP+A+V + ++ V A+ E W EG L G+G + D + EV R + S S +R L L+ LG G RRL+ +L +PGR WEGK+E+L A+V + A L G EG G K ++ G+ EE+ +VR D +++ + K+ L + AA AA G PR + D DD + ++ ++ Q RR + RAA ++ L AFP V + V TL+ +AG L+ G + D +++A AV L A +P P+P G C SL L + VWS+R ++ AL ++ R ++ AP+ LTGS++ V+ A G DAKY QVR AI V+ A+ R E+ + +LMPH + + +A D P+V + +A
Sbjct: 1608 ALTERSSTAQRFFLSALAGVAKLAPGGEEVRRAILRLLREYRRVADLATHRSQRLPVVLALRQLCTAAGEGL-------------EE----------------AAWAAVLPLAYVGRFEEEEGGEGEVRKAWEEIWMEGCAAL-----GKGGGNTTKALGDE-------LCTEVERELRSSSWSGRRAALKALASLSEGLGRG-GLRLHARRLVGELLDLLPGRLWEGKDEVLRALVKVVVAW-----LLRVAEEGEEG----------GRKEEGGDDVWEGLAVGVTPAAEASEAAEGRDEEAFGR------LVR---------EDAEDQAIN--------------KEGKASLVQGAALSEIAASGCLASLS-----PRGEDLAAPAATGQDPTDDGLHSLSYRGLIRVLTDQCRRPHRDYRRAAVQAIMELASAFPSLDVLESVRETLVLMAGGLEASVGVESCNYNKETVAGRAGSEVDHVLRAWAVEALGACFP--PSPPMLVQ------------------GDQATSCPAYLTQKESLPWLLPMLLSRSSFSVWSLRRAVHKALKRVMERVYVRPDANSASFPKDSGSCNQVQPSADLAPLPSLLTGSVVDRVISAAIQGVGDAKYHQVREVAIDVLLALIKRPEMEVHVSLMPHSDRIMSALEKVVHDQNPEVVRLAMEA 2183
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: Proteasome-associated (protein ecm29 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TC24_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.500e-8 Identity = 77/242 (31.82%), Postives = 106/242 (43.80%), Query Frame = 2
Query: 5 ALSERSSTLRRTYSSALSSVARLAPAAG-VSRLAGRLAQLFRE-ADPDFDKRQRRTLALLLGDLCRRAGGQLGAPGGKAATGGVKEEGTSXXXXXXXXXXFAASGWNQVLPVAFVASKDPDK----PVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAA 712
AL+ERSST +R + SAL+ VA+LAP V R RL + +R AD + QR + L L LC AG L EE + W VLP+A+V + ++ V A+ E W EG L G+G + D + EV R + S S +R L L+ LG G RRL+ +L +PGR WEGK+E+L A+V + A
Sbjct: 597 ALAERSSTAQRFFLSALAGVAKLAPGGEEVRRAILRLLREYRRVADLATHRSQRLPVVLALRQLCTAAGEGL-------------EE----------------AAWAAVLPLAYVGRFEEEEGGEGEVRKAWQEIWMEGCAAL-----GKGGGNTTKALGDE-------LCTEVERELRSSSWSGRRAALKALASLSEGLGRG-GLRLHARRLVGELLDLLPGRLWEGKDEVLRALVKVVVA 796
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: proteasome (adapter and scaffold protein ECM29 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8EF16) HSP 1 Score: 66.6 bits (161), Expect = 2.270e-7 Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 2
Query: 323 VLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAA 712
V+PV F++ + DK V+ + E W+E +T +L + L + I+ ++ I+S S +KR+ + L +LG S+ S R L+ V+++VPGR WEGKE+LLE + +LC +
Sbjct: 1440 VVPVIFLSRFEDDKNVSSLYEELWEENMTSERL----------------TLQLYIGEIVTLITEGIASSSWGSKRKAAKAIVKLCEVLGESVS--SYHRVLLTSVMTEVPGRIWEGKEDLLEGLSSLCTS 1551
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Oryza nivara TaxID=4536 RepID=A0A0E0IY04_ORYNI) HSP 1 Score: 63.5 bits (153), Expect = 1.260e-6 Identity = 41/136 (30.15%), Postives = 70/136 (51.47%), Query Frame = 2
Query: 308 SGWNQV-LPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAA 712
SG+N V LPV F + D DK + + E W++ + ++ + L LP I++ + ++SS S KR+ +K L LG SL + ++ +L ++PGR WEGK+ +L+A+ ALC++
Sbjct: 177 SGYNAVVLPVIFASRFDDDKDIGALYGELWEDIPSSERV----------------TLQLYLPEIISLLCDSMSSSSWAGKRKSAKAIKKLCDALGESLSVHHNN--ILESLLKELPGRFWEGKDAILDALAALCSS 294
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WHT8_ZIZPA) HSP 1 Score: 63.2 bits (152), Expect = 1.460e-6 Identity = 44/145 (30.34%), Postives = 76/145 (52.41%), Query Frame = 2
Query: 308 SGWNQ-VLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAAGKGSAITLE 739
SG+N VLPV F + D DK ++ + E W++ + ++ + L LP I++ + +SS S KR+ +K L LG SL + +++ +L ++PGR WEGK+ +L+A+ +LC++ +AIT E
Sbjct: 109 SGYNTCVLPVIFASRFDDDKDISALYGELWEDIPSSERV----------------TLQLYLPEIVSLLCDCMSSSSWAGKRKSAKAIKKLCDSLGESLSVHQNN--ILKSLLKELPGRFWEGKDAILDALASLCSSCH-AAITAE 234
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: Uncharacterized (protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WFL1_ZIZPA) HSP 1 Score: 63.2 bits (152), Expect = 1.460e-6 Identity = 44/145 (30.34%), Postives = 76/145 (52.41%), Query Frame = 2
Query: 308 SGWNQ-VLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAAGKGSAITLE 739
SG+N VLPV F + D DK ++ + E W++ + ++ + L LP I++ + +SS S KR+ +K L LG SL + +++ +L ++PGR WEGK+ +L+A+ +LC++ +AIT E
Sbjct: 109 SGYNTCVLPVIFASRFDDDKDISALYGELWEDIPSSERV----------------TLQLYLPEIVSLLCDCMSSSSWAGKRKSAKAIKKLCDSLGESLSVHQNN--ILKSLLKELPGRFWEGKDAILDALASLCSSCH-AAITAE 234
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: Uncharacterized (protein n=5 Tax=Asteraceae TaxID=4210 RepID=A0A2J6JHI8_LACSA) HSP 1 Score: 63.9 bits (154), Expect = 1.520e-6 Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = 2
Query: 323 VLPVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAA 712
V+PV F++ + DK V+ + E W+E +T +L + L + I+ +++ I+S S +KR+ + L +L SL S + L+ +++++PGR WEGKE+LLEA+ +LC +
Sbjct: 1444 VVPVIFLSRFEDDKNVSSLYEELWEENMTSERL----------------TLQLYVSEIVTLITQGIASSSWASKRKAAKAIVKLCEVLDESLF--SYHQVLLTSLMNEIPGRIWEGKEDLLEALSSLCTS 1555
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Match: proteasome-associated (protein ECM29 homolog isoform X1 n=35 Tax=Gossypium TaxID=3633 RepID=A0A1U8I0J6_GOSHI) HSP 1 Score: 63.9 bits (154), Expect = 1.520e-6 Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 2
Query: 308 SGWNQVL-PVAFVASKDPDKPVADAFAEAWQEGLTQLQLGAAGQGEACRVRGAKDAVLLMLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRRVLSQVPGRTWEGKEELLEAVVALCAAGKGSAITLE 739
SG+N V+ PV F + + DK V+ F E W+E + G + + L + I++ + +I+S S +KR+ + L+ +LG SL SS L+ ++ ++PGR WEGKE LL+A+ AL + AI++E
Sbjct: 1442 SGYNTVIIPVIFTSRFEDDKHVSGLFEELWEESTS----------------GDRITLQLYMGEIVSLICDSIASSSWASKRKSAKAICKLSEVLGDSL---SSYHVLLTSLMKEIPGRLWEGKETLLDAISALSVSNH-KAISME 1566 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig948.17512.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig948.17512.1 >prot_E_fasciculatus_S2_contig948.17512.1 ID=prot_E_fasciculatus_S2_contig948.17512.1|Name=mRNA_E_fasciculatus_S2_contig948.17512.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=497bp MLPAILAEVSRAISSVSRVTKRQGCSGLKDLASILGPSLGEESSGRRLIRback to top mRNA from alignment at E_fasciculatus_S2_contig948:4411..8645- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig948.17512.1 ID=mRNA_E_fasciculatus_S2_contig948.17512.1|Name=mRNA_E_fasciculatus_S2_contig948.17512.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4235bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig948:4411..8645- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig948:4411..8645- >mRNA_E_fasciculatus_S2_contig948.17512.1 ID=mRNA_E_fasciculatus_S2_contig948.17512.1|Name=mRNA_E_fasciculatus_S2_contig948.17512.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1491bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig948:4411..8645- (Ectocarpus fasciculatus EfasUO2)back to top |