mRNA_E_fasciculatus_S2_contig946.17495.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig946.17495.1
Unique NamemRNA_E_fasciculatus_S2_contig946.17495.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: IF3_N (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J9_9PHAE)

HSP 1 Score: 796 bits (2056), Expect = 4.540e-280
Identity = 532/749 (71.03%), Postives = 563/749 (75.17%), Query Frame = 1 
Query:    1 MASRFLRADLRRACRPPSKLTSSSSRNTFLSLGTTR-DHPSLAPSPSACNPSALTAAALASPEWLHSSVQSSSHAHSELATTRSGSVEHGLRLPVPVTVTGMLPTPALTSAGEQRDAYVGCWKG-AVGLGLCSRQSRQQQQAGRRFLSSRSSKAGGQTLTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEEQMEGYEGVVLKHSGGGNGYTRREIECIPKTVRPTXXXXXXXAPEAPGGDGGTIPEAGEKENLKPPPPRSGVVDKDVMREILRGAAETAQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDVTESVSPLQLGSTVISLDDVELYSDLVDETVDNDVDLDLERERNEARRXXXXXXXXXXXXK--NAARYDSMRGXXXXXARKKWKAEIGREGGRDGDNFDGESGWGEKDDRRTARRAPKGREKQDSGRRGVAGGDRRAGASGRGDSPKGWSTGGGRRDGPVSNVSQQNRAGSFRRGGVRTSDG---PRVGPPPPSPARAVRKPYKWRTSIADAKVAEAGGDRDEASAKPWYSRSSSAASLARAARTNDGSGANAAT--EEIRGFKARLGGGSVNPMPANPVAAGTAKATSRQGFRSSSVTASPVKVKPPRVSETGSDQGVGGEE 2220
            MASRFLRADLRR  RP  + TSS+S N FLSL TTR D PS+APS  A +PSALTAAAL S EWL SSVQSS HAHSE AT+RSGS EHG RLP+PVT  GM    ALTSA EQR  YVGCW+G AVGLGLCSRQ   QQQAG+RFLSSRS KAGGQTLTN+KI+A KILLVLET+DGSK  T VSRQQALAAANA NLDLVQVS+G+NDQVVCRLMDFKKEEYRKKKQ+KANAKRIQKKKEIRL GMIADHDF RKVNDVKKYLERGD+VKVVLEANISLLKRSGNCLNVLQEKFEEQME YEG VLKHSGGGNGYTRREIECIPKTVRPT       A EAPG DGG IPEAGEKEN  PPP R GVVDK V+ E++ GAA TA G            XXXXXXXXXXXXXXXXXXXXXXX +DV E+ SPL+LGST I LDDVELY DLVDETV +D D+  ERERNEARR            K  NAARY   RGXXXXX     KAEI         NFD ESGWGEKDDRRTARR P GR++Q  GRRGVAGGD RAGAS  G SPK WSTGGGRRDG   NV QQ  AGSFRRG  R SDG   PR GPPP SPA A R PYKWRTSIADAKV EAGGDR+  SAKPWY+                          EE+RGFKAR GGGS+N  P N VA  TAKATS QGFRSSSVTA   KV PP+ SE GSD+GV GEE
Sbjct:    1 MASRFLRADLRRVFRPLGRPTSSNS-NAFLSLATTRPDEPSVAPS--AYSPSALTAAALDSSEWLCSSVQSSGHAHSESATSRSGSSEHGPRLPLPVT--GMFL--ALTSA-EQR--YVGCWRGGAVGLGLCSRQ---QQQAGKRFLSSRSGKAGGQTLTNKKIKAEKILLVLETEDGSKTATTVSRQQALAAANAVNLDLVQVSSGRNDQVVCRLMDFKKEEYRKKKQRKANAKRIQKKKEIRLRGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMEEYEGAVLKHSGGGNGYTRREIECIPKTVRPTTAKPTTSASEAPGRDGGGIPEAGEKENPIPPPSRGGVVDKHVVLEVVSGAAATAHGGSEGELSSSNSGXXXXXXXXXXXXXXXXXXXXXXXXEDVAETASPLKLGSTEILLDDVELYDDLVDETVYDDGDI--ERERNEARRREDRQKREEAKEKVRNAARYAPTRGXXXXXXXXXXKAEIDXXXXXXXXNFDEESGWGEKDDRRTARRVPTGRDQQTGGRRGVAGGDSRAGASDSGGSPKVWSTGGGRRDGSFPNVLQQG-AGSFRRGDRRGSDGGSGPREGPPPSSPALAARAPYKWRTSIADAKVVEAGGDREGTSAKPWYTSXXXXXXXXXXXXXXXXXXXXXXXXXEEVRGFKARFGGGSMNLTPTNSVAVRTAKATSSQGFRSSSVTAPSAKVNPPKASEVGSDRGVDGEE 733
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BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ50_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.330e-44
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  643 MDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEEQMEGYEGVVL 918
            MDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDF RKVNDVKKYLERGD+VKVVLEANISLLKRSGNCLNVLQEKFEEQME YEGV +
Sbjct:    1 MDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMEEYEGVRM 92
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: translation (initiation factor IF-3 n=1 Tax=Salirhabdus sp. Marseille-P4669 TaxID=2042310 RepID=UPI000C7C0A36)

HSP 1 Score: 79.0 bits (193), Expect = 3.180e-13
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:  460 GQTLTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKR--IQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVK 810
            G+TL NEKIRA ++ L+   KDG +++ V SRQ+AL  A  A LDLV V+      V CR+MD+ K  + ++K++K N K+  +   KE+RL   I +HDF+ K+ + +K+LE+GD VK
Sbjct:   13 GETLINEKIRAREVRLI--GKDG-EQIGVKSRQEALEIAERAELDLVMVAPNAKPPV-CRIMDYGKYRFEQQKKEKENRKKQKVINVKEVRLSPAIEEHDFNTKLRNARKFLEKGDKVK 127
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: Translation (initiation factor IF-3 n=1 Tax=[Clostridium] thermoalcaliphilum TaxID=29349 RepID=A0A1V4I734_9FIRM)

HSP 1 Score: 72.8 bits (177), Expect = 4.820e-11
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:  475 NEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDF--------KKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVL 819
            NE+IR  +I ++L   DG +++ ++S ++A   A   NLDLV++S   N  V C++MDF        KKE+  KKKQK  N K      EIRL  +I +HD   K N  KK+LE+GD VKVV+
Sbjct:   24 NEQIRDKEIRVIL---DGGEQLGIMSAKEAQLIATQKNLDLVKISPNANPPV-CKIMDFGKYKYEQSKKEKXSKKKQKVINVK------EIRLRPVIEEHDLTTKGNQAKKFLEKGDKVKVVV 136
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: translation (initiation factor IF-3 n=3 Tax=Thalassobacillus TaxID=331971 RepID=UPI00048C0F73)

HSP 1 Score: 71.6 bits (174), Expect = 7.940e-11
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:  475 NEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEY-RKKKQKKANAKRIQ-KKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVL----------EANISLLKRSGN-CLNVLQEKFEEQMEG 900
            NEKIRA ++ L+    +  +++ V SRQ+AL  A  ANLDLV V+      V CR+MD+ K  + ++KK K+A  K+   K KE+RL   I +HDF+ K+ + +K+LE+GD VK  +          E    +L+R    C +V Q + + +MEG
Sbjct:    4 NEKIRAREVRLI---DNNGEQLGVKSRQEALEIAQNANLDLVLVAPNAKPPV-CRIMDYGKYRFEQQKKDKEARKKQTTIKVKEVRLSPGIEEHDFNTKLRNARKFLEKGDKVKASVRFRGRAITHKELGQKVLERMAEECKDVAQVETKPKMEG 154
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: Translation (initiation factor IF-3 n=4 Tax=Bacillaceae TaxID=186817 RepID=A0A6B9YDN8_9BACI)

HSP 1 Score: 72.0 bits (175), Expect = 9.090e-11
Identity = 52/124 (41.94%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:  460 GQTLTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKK----KEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVL 819
            G+TL NE+IRA ++ L+    DG +++ V SRQ+AL  A+ ANLDLV V+      V CR+MD+ K  YR ++QKK       +K    KE+RL   I +HDF+ K+ + +K+L++GD VK  +
Sbjct:   19 GETLINERIRAREVRLI--GADG-EQIGVKSRQEALKIADQANLDLVLVAPNAKPPV-CRIMDYGK--YRFEQQKKEXXXXXXQKVINIKEVRLSPAIEEHDFNTKLRNARKFLQKGDKVKAAV 136
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: Translation (initiation factor IF-3 n=11 Tax=Sporolactobacillus TaxID=2077 RepID=V6J0U9_9BACL)

HSP 1 Score: 71.2 bits (173), Expect = 1.080e-10
Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 1 
Query:  469 LTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKK---EEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEE 888
            + NE IRA ++ L+ +     ++V + S+ +ALA A+  NLDLV V+ G    V CR+MD+ K   E+ +K+++ + N K I  K EIRL   I +HDF+ K+ + KK+LE+GD VK  +      +  S     VL++  EE
Sbjct:    2 IVNEGIRAQQVRLIGQN---GEQVGIKSKAEALAMAHNVNLDLVMVAPGAKPPV-CRIMDYGKFRFEQQKKEREARKNQKVINLK-EIRLSPSIEEHDFNTKMRNAKKFLEKGDKVKASVRFRGRAITHSNLGKQVLEKLAEE 139
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: Translation (initiation factor IF-3 n=1 Tax=Sporolactobacillus sp. THM7-7 TaxID=2511172 RepID=A0A4Q4JJ08_9BACL)

HSP 1 Score: 70.9 bits (172), Expect = 1.440e-10
Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:  469 LTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKK----KEIRLGGMIADHDFDRKVNDVKKYLERGDLVKV--------VLEANIS---LLKRSGNCLNVLQEKFEEQMEG 900
            + NE IRA K+ L+ +     +++ + S+ +AL  A+  NLDLV V+ G    V CR+MD+ K  YR ++QKK    R ++K    KEIRL   I +HDF+ K+ + KK+L++GD VK         +  +N+    L K + +C ++   +   +MEG
Sbjct:    1 MINEGIRASKVRLIGQN---GEQIGIKSKNEALTIASRVNLDLVMVAPGAKPPV-CRIMDYGK--YRYEQQKKEREARKKQKVINIKEIRLSPSIEEHDFNTKMRNAKKFLQKGDKVKASVRFRGRAITHSNLGRQVLEKLAESCADISVIEARPKMEG 153
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: Translation (initiation factor IF-3 n=1 Tax=Sporolactobacillus sp. THM7-4 TaxID=2511170 RepID=A0A4Q4IMJ1_9BACL)

HSP 1 Score: 70.9 bits (172), Expect = 1.470e-10
Identity = 55/142 (38.73%), Postives = 80/142 (56.34%), Query Frame = 1 
Query:  475 NEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKK----KEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEE 888
            NE IRA ++ L+ +     ++V + SR +ALA A   NLDLV V+ G    V CR+MD+ +  YR ++QKK    R  +K    KEIRL   I +HDF+ K+ + KK+LE+GD VK  +      +  S     VL++  EE
Sbjct:    4 NEGIRAQQVRLIGQN---GEQVGIKSRTEALAMARQVNLDLVMVAPGARPPV-CRIMDYGR--YRYEQQKKDREARKNQKVISIKEIRLSPSIEEHDFNTKMRNAKKFLEKGDKVKASVRFRGRAITHSDLGRQVLEKLAEE 139
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Match: Translation (initiation factor IF-3 n=4 Tax=Oceanobacillus TaxID=182709 RepID=A0A345PI24_9BACI)

HSP 1 Score: 70.5 bits (171), Expect = 2.040e-10
Identity = 51/123 (41.46%), Postives = 70/123 (56.91%), Query Frame = 1 
Query:  475 NEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLVQVSTGKNDQVVCRLMDF--------KKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFDRKVNDVKKYLERGDLVKVVL 819
            NEKIRA ++ L+    D   ++ V +RQ+AL  A   NLDLV V+ G    V CR+MDF        KKE+  +KKQK  N K      E+R    I +HDF+ K+ + KK+LE+GD VK  +
Sbjct:    5 NEKIRAREVRLIDSNGD---QLGVKTRQEALEIAQTRNLDLVMVAPGAKPPV-CRIMDFGKHRFELQKKEKEARKKQKVINIK------EVRFTPGIGEHDFETKLKNAKKFLEKGDKVKAAV 117
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig946.17495.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
IF3_N4.540e-28071.03domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.330e-4494.57protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
translation3.180e-1343.70initiation factor IF-3 n=1 Tax=Salirhabdus sp. Mar... [more]
Translation4.820e-1142.28initiation factor IF-3 n=1 Tax=[Clostridium] therm... [more]
translation7.940e-1137.42initiation factor IF-3 n=3 Tax=Thalassobacillus Ta... [more]
Translation9.090e-1141.94initiation factor IF-3 n=4 Tax=Bacillaceae TaxID=1... [more]
Translation1.080e-1037.06initiation factor IF-3 n=11 Tax=Sporolactobacillus... [more]
Translation1.440e-1034.59initiation factor IF-3 n=1 Tax=Sporolactobacillus ... [more]
Translation1.470e-1038.73initiation factor IF-3 n=1 Tax=Sporolactobacillus ... [more]
Translation2.040e-1041.46initiation factor IF-3 n=4 Tax=Oceanobacillus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig946contigE_fasciculatus_S2_contig946:18750..24332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score73.9
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog586416.GZ22_10700
Preferred nameinfC
Model size2223
KEGG koko:K02520
Hectar predicted targeting categorymitochondrion
GOsGO:0000049,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901193,GO:1901195,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1904688,GO:1904690,GO:1990856,GO:1990904,GO:2000112,GO:2000765,GO:2000767
Exons6
EggNOG free text desc.IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
EggNOG OGs1V1RC@1239,4HFUS@91061,COG0290@1,COG0290@2
Ec32 ortholog descriptionTranslation initiation factor 3, N-terminal
Ec32 orthologEc-10_000130.1
Cds size2223
COG Functional cat.J
Best tax levelBacilli
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig946.17495.1prot_E_fasciculatus_S2_contig946.17495.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig946 18750..24332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842594.4764588-CDS-E_fasciculatus_S2_contig946:18749..200631696842594.4764588-CDS-E_fasciculatus_S2_contig946:18749..20063Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig946 18750..20063 -
1696842594.494241-CDS-E_fasciculatus_S2_contig946:21153..212521696842594.494241-CDS-E_fasciculatus_S2_contig946:21153..21252Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig946 21154..21252 -
1696842594.5050056-CDS-E_fasciculatus_S2_contig946:21451..215291696842594.5050056-CDS-E_fasciculatus_S2_contig946:21451..21529Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig946 21452..21529 -
1696842594.5176883-CDS-E_fasciculatus_S2_contig946:22223..223511696842594.5176883-CDS-E_fasciculatus_S2_contig946:22223..22351Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig946 22224..22351 -
1696842594.5350642-CDS-E_fasciculatus_S2_contig946:22872..230091696842594.5350642-CDS-E_fasciculatus_S2_contig946:22872..23009Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig946 22873..23009 -
1696842594.5466256-CDS-E_fasciculatus_S2_contig946:23865..243321696842594.5466256-CDS-E_fasciculatus_S2_contig946:23865..24332Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig946 23866..24332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig946.17495.1

>prot_E_fasciculatus_S2_contig946.17495.1 ID=prot_E_fasciculatus_S2_contig946.17495.1|Name=mRNA_E_fasciculatus_S2_contig946.17495.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=741bp
MASRFLRADLRRACRPPSKLTSSSSRNTFLSLGTTRDHPSLAPSPSACNP
SALTAAALASPEWLHSSVQSSSHAHSELATTRSGSVEHGLRLPVPVTVTG
MLPTPALTSAGEQRDAYVGCWKGAVGLGLCSRQSRQQQQAGRRFLSSRSS
KAGGQTLTNEKIRAGKILLVLETKDGSKEVTVVSRQQALAAANAANLDLV
QVSTGKNDQVVCRLMDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADH
DFDRKVNDVKKYLERGDLVKVVLEANISLLKRSGNCLNVLQEKFEEQMEG
YEGVVLKHSGGGNGYTRREIECIPKTVRPTTAKPTTSAPEAPGGDGGTIP
EAGEKENLKPPPPRSGVVDKDVMREILRGAAETAQGESEGELSSSISGGN
SAGEATNSSWEEESGEDSSSDEDDVTESVSPLQLGSTVISLDDVELYSDL
VDETVDNDVDLDLERERNEARRREDRRKREEAKEKNAARYDSMRGGGGGG
ARKKWKAEIGREGGRDGDNFDGESGWGEKDDRRTARRAPKGREKQDSGRR
GVAGGDRRAGASGRGDSPKGWSTGGGRRDGPVSNVSQQNRAGSFRRGGVR
TSDGPRVGPPPPSPARAVRKPYKWRTSIADAKVAEAGGDRDEASAKPWYS
RSSSAASLARAARTNDGSGANAATEEIRGFKARLGGGSVNPMPANPVAAG
TAKATSRQGFRSSSVTASPVKVKPPRVSETGSDQGVGGEE*
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mRNA from alignment at E_fasciculatus_S2_contig946:18750..24332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig946.17495.1 ID=mRNA_E_fasciculatus_S2_contig946.17495.1|Name=mRNA_E_fasciculatus_S2_contig946.17495.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5583bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig946:18750..24332- (Ectocarpus fasciculatus EfasUO2)
ATGGCGTCAAGGTTCCTTCGAGCCGATCTGCGGCGCGCATGCAGGCCTCC
TTCCAAGCTTACGAGCAGCAGCAGCAGGAATACCTTCCTCTCTTTGGGAA
CCACACGAGATCATCCCTCCTTGGCACCATCACCATCGGCATGCAATCCG
TCCGCGTTGACAGCAGCAGCTCTTGCTTCGCCGGAGTGGCTTCATTCCAG
CGTCCAGTCCTCTAGCCATGCACACAGCGAGTTGGCAACAACGCGTAGCG
GTAGTGTCGAGCACGGTCTCCGACTTCCGGTACCAGTAACCGTAACCGGG
ATGTTACCTACTCCGGCCTTGACATCCGCGGGAGAGCAGCGCGACGCATA
CGTCGGTTGCTGGAAAGGGGCGGTAGGGTTGGGGTTGTGCTCAAGACAGT
CAAGACAGCAGCAACAGGCAGGGAGACGGTTCCTGAGCAGTCGAAGCAGC
AAAGCCGGTGGCCAGACGTGAGTACGATGCTAAGCCCAAGTACCTACGTA
CGTACATTTGCACGCGGCACAAGATAGATCGAAGCTCTGCCTTCTTTTTT
TGGCGTGCACGAAAAGCTCTTGCCTGGAGCATGCTTTTAGCCTGAGTGCT
GAGCACAAACCCGGGCCGCCCATACCGCGTGGCATAGGACTTTTCGCAAC
TCTGTCGGCTGTGCCTGGATAGAAGCTACCGCTGCCGCTGTTGAACATGG
TGGCATGCGTTCTGTCTTACATGCATAGGTCAACACAATCTAAACTGACG
CGTGCTTCGTTGCACCAAAATGCGGCGGAATTTCTTTATCCCGAATCCCG
AACGTGCTGTGTTCACGACCCTCCAGATCTCCGTATTTGGGGCGAACGCA
ACATGTACCGTGAGTAGCACATGTATCATCCAGCATTGTTGTGCGACACG
TCTGTTTCGGCTTGTTCGTTTGCTGATCGCACTTCCAGCAAGATATCACG
CACACCACAGCAGTACAGCCTCGACTGCTGTTCAGCGCTCAGGGTGTAAG
GGTAACGATCTCAAAATCGCACCCAGGGCGCGGCGCACTTGTATTCTTCT
TGATGTCTTGACCTCCTATTCCCCCGCGCACACATGGTACCTGGACCTGT
TGTATCTTATGCTACATTAAGATGCCATCTTGTGAGGGAAACAGCTTCGG
TATGTAGGAATCATCGTGGCCCTACCCTAACTTGGGAGTTTTCCGTGTTC
TAGCGAGTACATGTAGGCCGTCAGCCTCAAGAACATCAGTCCAACGCTTC
GAGTATATACCAAACAAAATTTTCCTGCTTCGCTCGTGCCTGTTCTTCGC
TCGTGTCCGCGGTGCTGCACTAGGCTTACGAACGAGAAGATCAGGGCCGG
GAAGATTCTGCTGGTGTTGGAAACGAAAGACGGCTCCAAGGAGGTTACCG
TCGTCTCTCGGCAGCAGGCGCTCGCCGCCGCAAATGCTGCAAACCTCGAT
CTGGTGCAGGGTGAGGAAGGAGACACGAATACAAGAAGTCGCTTCGAGAG
GCATAGATTTTGCCTTCTTTTTATTCTGTCTACAAGAAGAAAGAAAAGTA
AGATTTATCAGCAGAGTCCAGGATAATTTGCGCGAAGGTAAGTACTATGC
GGTGTGGTGGAGGCTATGTTGTAGCCATAGTTTGAAGCAGGCAAAGGCGT
CGCTGCGGCGGAGGGGTAATCTCGATCACGTGCATGTTGCTGTGTGGAGC
TTGAGAGCGAGGCGCAGCAGCAGTACTGCTGTTTTATGGTGGAAACAAGG
ACAAAAATTGTCATTCCTGCATCTACAAGCATCTTCGTGTTGGCATTCCC
GAGAGGGACGAAGCAACATCTTGAGCACGTTTACCTCCCTCCGCTCAACC
CTGCCGCGCCCCCAACTTGAAAGGCATTTTTCGTCTCCATGTATCCCCAA
AACCTCAACTCGCACATGTCTGTTCCTGCGTGTATGCTGAATGGATTAAA
AAAATAATAATAAAAATAATGAAAAAAAAAGTGAGTACCGGTAAGAACGA
CCAGGTGGTCTGCAGGCTCATGGACTTCAAGAAGGAGGAGTACCGGAAGA
AGAAGCAAAAAAAGGCCAACGCGAAAAGGATCCAGAAGAAGAAGGAGATA
CGACTGGGGGTGCGTACGGTGGCTGGCGTGTTGTTCTTGAATCGCAGGTT
TCAAACCTCCTGTGGCCTCACTTCGCAGTTTTGCTTTTTTCTTCCTGTCT
CTCCTTCTACACCCCGCCTTTGGCAGTATGCCCATGGCTCAAGTATCTCC
GCGTACATCCAAAAGGAATTCCCAAAGGCAATAGATGTGCATTACCTAGC
TAGTCATGTGTGCCCCTTTTTAGCTTTCTTAGGCAACAGGAAGGGAAAGC
GTCGGTGGGGATCGCCTTGCGACCGCTGTGTGTGTAGCTCAGCTTACTAG
ATGCCACTCATGTTGTTCGCTCCAAACTACCTTTCGAGTTGATCACATTA
CCTTGTCTGGTTGCTATACTATCCAACGTATTCGTGTCGTATTCTTCATG
ACCAGGGTCCTCACCTGTCCTAGAGAACCCATGTCGGTTTCGTGTATCTC
GCCAAAAAACAGAAACGATTACCAAGCTGCAGTAAATCAACACAACACGC
CCAGTATTGTGAAAACTGCCAGCCGGAAGTCTCTGTTCTAGCACACACCC
TTTTTCCCGTTCTGGAATACACCCTAGTCTAGGTATAGCGGGTTATTTTT
TCTTGCTCGTCGTGATAGGGTTTCTTGTTTAGCCGTTCGCAACGCAGCAC
GATTATTGGTCCTTCGTACGTAACTGCCGCACCGCCTTTAATTTTGTGTC
CAGGGCATGATCGCGGACCACGACTTTGACAGGAAAGTGAACGATGTCAA
GAAGTATTTGGAGAGAGGGGACCTCGTCAAGGTGAAACACAAATGCTTAG
GCTGGTGCACGCTGCTGAACAACTGCAGGCAATATGACGTTTGGTCACGT
GTTCAATATGCGTCTTTCGCGGTTATGTTCAAGCCACGTCTCGGGTCTTG
GTTTCAAAATTCCTTCTTCACTTGTTACTGCGTGGATTCCTCTCTGGTCT
TATCTCATGAAACCAACACAACCACGGCAGGTGGTATTGGAGGCGAACAT
ATCGCTACTCAAACGATCCGGGAACTGCTTGAACGTCTTGCAGGAGAAAT
TCGAGGAGCAAATGGAAGGCTACGAAGGGGTGCGTATGTCCTGTGTTTTT
CTTTTTTCCTATTTGTTTCTTTGGCGTGGCATGACAAGACAACTCCTCTC
GGGCCCAGCCGGACCCGCGATTCGGCCTATCAATCGAAAAACATGAGGCG
GCACGTCCACACGCAACAGAAACATAGCAAGAACCGCACAACAGCTTGAG
ATGCGGAGAATGGTCTGTTGTTGCCCTCGAGGGTAGATACCGTTGCTGCG
AACATCGTAAGATTTGGAATCCTCGGCCACCCGACTCGAAAAAAGTAGCT
TGAGTTTCCATAACAGGCCCAAAAACGTTCTGGCTCATTTCTCTGGCCCG
TGTCCTCAACACGGCGTCCGCCGGGTGAGGGTTGGCGGGTTTTCGTTGTG
CTTGCGAGAGAAGCATTGCTTCCAGCTTCCACCTCAATAACGTTTTTGAA
CCCGCAACGTAATCCCTGCAAATCGCGACACTATGCCGGGGCTTCCATGA
TGCTTATGGGGGCGGTCCGCCGGTTGTATGTCGAGCGCGTGCGATCGCCA
ATTGTAGAAGGGCACACAATGGCACCAAGTGGGTAGTAGACGTTTGCTTG
AGTTTGGTTCTGCCACCTTCATGAGGTTGAATTGTATCTTGCGGTGACAA
AACGACAGACAATTCCGAGCTTTCGTGACAAACCAGTTGGTCATGCCGAC
ATTGGCTGACGAGCGGTTCGAAGACGCTAGCGACGCGATGAAGCTTACGT
CCGGGGGTGTTACGTGTTTAGCGACGTGTTCTGGAACGCGTGTTTCTGGT
TGTGCCGTCTTGCTCTATTAGGAAGACCGAAGTCAGTCGTTCTCTGCTGG
AACGAACTTGAAATCAGGTCTTGTTTCCCTACGACTGCCTCTTATTCCTG
AACAAGGAGGAGATGGTTAACGGGAAGAGCGAAACACGCCGTCGAAAAAA
CTACCATAGTACGATGGTCGCATTGCTTTGCCAGAGCATTTCGTGGCGTA
CTCGTTTCTCGCCCTCTCGTCGCAAGAAACTCTTTTGGCCTGCCCAACTC
GACTCCACGGTACTACTGTGTATGGATTTCACTGCTAAAATTATCGAATC
TCCCTCGATGCCTTCGTAGGTTGTGCTAAAGCACTCTGGAGGGGGCAACG
GGTACACCCGGCGGGAAATCGAATGCATCCCGAAAACCGTCAGGCCGACT
ACCGCAAAGCCGACAACGTCAGCCCCTGAGGCGCCGGGGGGAGATGGTGG
CACTATTCCCGAGGCTGGGGAGAAGGAGAACCTCAAGCCCCCGCCGCCGC
GTAGCGGGGTGGTCGACAAGGATGTCATGCGCGAAATTCTCAGGGGAGCA
GCGGAAACAGCGCAAGGAGAGAGCGAAGGAGAGCTATCTTCGTCGATTTC
TGGTGGTAACTCCGCGGGTGAAGCCACGAACAGTTCTTGGGAAGAGGAAT
CAGGAGAAGATTCCTCGTCAGACGAAGACGACGTGACTGAATCAGTGTCG
CCGTTGCAGTTGGGAAGCACTGTGATCTCGTTAGACGATGTGGAGCTGTA
CAGCGATCTCGTGGATGAGACCGTCGACAACGACGTCGACCTTGACCTTG
AGAGGGAAAGAAACGAGGCCCGAAGACGCGAAGACCGGCGGAAGCGGGAA
GAAGCTAAGGAAAAGAACGCGGCCCGCTACGATTCCATGCGCGGTGGCGG
CGGCGGCGGTGCGCGCAAAAAGTGGAAGGCTGAGATTGGCCGCGAGGGCG
GTCGTGACGGCGACAATTTTGATGGAGAGTCTGGGTGGGGTGAGAAGGAT
GACAGGCGGACAGCACGTCGGGCGCCCAAGGGGAGAGAAAAGCAAGACAG
CGGAAGGAGGGGAGTTGCGGGCGGGGACAGGAGAGCGGGTGCCAGCGGCA
GGGGAGATAGTCCGAAGGGGTGGTCAACAGGCGGCGGACGTCGAGACGGC
CCCGTCTCAAACGTGTCACAACAAAATAGGGCGGGCAGCTTTAGACGAGG
GGGTGTAAGGACCAGCGATGGTCCACGTGTGGGACCTCCTCCGCCTTCAC
CAGCACGTGCAGTCCGCAAACCGTACAAGTGGCGGACTTCCATTGCCGAT
GCAAAGGTGGCGGAGGCAGGCGGGGACAGAGACGAGGCATCTGCGAAGCC
CTGGTACAGTAGGTCTAGCAGTGCGGCATCACTGGCGCGGGCGGCACGCA
CGAACGATGGCAGCGGGGCTAATGCTGCGACCGAAGAGATTCGAGGGTTC
AAGGCTCGGTTGGGCGGAGGATCCGTGAACCCGATGCCTGCAAACCCAGT
TGCTGCTGGTACTGCCAAGGCAACATCCCGCCAGGGGTTTCGCAGTTCGT
CTGTGACGGCGTCTCCTGTGAAGGTGAAACCGCCAAGGGTATCTGAAACA
GGCTCGGACCAAGGGGTCGGCGGCGAGGAATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig946:18750..24332-

>mRNA_E_fasciculatus_S2_contig946.17495.1 ID=mRNA_E_fasciculatus_S2_contig946.17495.1|Name=mRNA_E_fasciculatus_S2_contig946.17495.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2223bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig946:18750..24332- (Ectocarpus fasciculatus EfasUO2)
ATGGCGTCAAGGTTCCTTCGAGCCGATCTGCGGCGCGCATGCAGGCCTCC
TTCCAAGCTTACGAGCAGCAGCAGCAGGAATACCTTCCTCTCTTTGGGAA
CCACACGAGATCATCCCTCCTTGGCACCATCACCATCGGCATGCAATCCG
TCCGCGTTGACAGCAGCAGCTCTTGCTTCGCCGGAGTGGCTTCATTCCAG
CGTCCAGTCCTCTAGCCATGCACACAGCGAGTTGGCAACAACGCGTAGCG
GTAGTGTCGAGCACGGTCTCCGACTTCCGGTACCAGTAACCGTAACCGGG
ATGTTACCTACTCCGGCCTTGACATCCGCGGGAGAGCAGCGCGACGCATA
CGTCGGTTGCTGGAAAGGGGCGGTAGGGTTGGGGTTGTGCTCAAGACAGT
CAAGACAGCAGCAACAGGCAGGGAGACGGTTCCTGAGCAGTCGAAGCAGC
AAAGCCGGTGGCCAGACGCTTACGAACGAGAAGATCAGGGCCGGGAAGAT
TCTGCTGGTGTTGGAAACGAAAGACGGCTCCAAGGAGGTTACCGTCGTCT
CTCGGCAGCAGGCGCTCGCCGCCGCAAATGCTGCAAACCTCGATCTGGTG
CAGGTGAGTACCGGTAAGAACGACCAGGTGGTCTGCAGGCTCATGGACTT
CAAGAAGGAGGAGTACCGGAAGAAGAAGCAAAAAAAGGCCAACGCGAAAA
GGATCCAGAAGAAGAAGGAGATACGACTGGGGGGCATGATCGCGGACCAC
GACTTTGACAGGAAAGTGAACGATGTCAAGAAGTATTTGGAGAGAGGGGA
CCTCGTCAAGGTGGTATTGGAGGCGAACATATCGCTACTCAAACGATCCG
GGAACTGCTTGAACGTCTTGCAGGAGAAATTCGAGGAGCAAATGGAAGGC
TACGAAGGGGTTGTGCTAAAGCACTCTGGAGGGGGCAACGGGTACACCCG
GCGGGAAATCGAATGCATCCCGAAAACCGTCAGGCCGACTACCGCAAAGC
CGACAACGTCAGCCCCTGAGGCGCCGGGGGGAGATGGTGGCACTATTCCC
GAGGCTGGGGAGAAGGAGAACCTCAAGCCCCCGCCGCCGCGTAGCGGGGT
GGTCGACAAGGATGTCATGCGCGAAATTCTCAGGGGAGCAGCGGAAACAG
CGCAAGGAGAGAGCGAAGGAGAGCTATCTTCGTCGATTTCTGGTGGTAAC
TCCGCGGGTGAAGCCACGAACAGTTCTTGGGAAGAGGAATCAGGAGAAGA
TTCCTCGTCAGACGAAGACGACGTGACTGAATCAGTGTCGCCGTTGCAGT
TGGGAAGCACTGTGATCTCGTTAGACGATGTGGAGCTGTACAGCGATCTC
GTGGATGAGACCGTCGACAACGACGTCGACCTTGACCTTGAGAGGGAAAG
AAACGAGGCCCGAAGACGCGAAGACCGGCGGAAGCGGGAAGAAGCTAAGG
AAAAGAACGCGGCCCGCTACGATTCCATGCGCGGTGGCGGCGGCGGCGGT
GCGCGCAAAAAGTGGAAGGCTGAGATTGGCCGCGAGGGCGGTCGTGACGG
CGACAATTTTGATGGAGAGTCTGGGTGGGGTGAGAAGGATGACAGGCGGA
CAGCACGTCGGGCGCCCAAGGGGAGAGAAAAGCAAGACAGCGGAAGGAGG
GGAGTTGCGGGCGGGGACAGGAGAGCGGGTGCCAGCGGCAGGGGAGATAG
TCCGAAGGGGTGGTCAACAGGCGGCGGACGTCGAGACGGCCCCGTCTCAA
ACGTGTCACAACAAAATAGGGCGGGCAGCTTTAGACGAGGGGGTGTAAGG
ACCAGCGATGGTCCACGTGTGGGACCTCCTCCGCCTTCACCAGCACGTGC
AGTCCGCAAACCGTACAAGTGGCGGACTTCCATTGCCGATGCAAAGGTGG
CGGAGGCAGGCGGGGACAGAGACGAGGCATCTGCGAAGCCCTGGTACAGT
AGGTCTAGCAGTGCGGCATCACTGGCGCGGGCGGCACGCACGAACGATGG
CAGCGGGGCTAATGCTGCGACCGAAGAGATTCGAGGGTTCAAGGCTCGGT
TGGGCGGAGGATCCGTGAACCCGATGCCTGCAAACCCAGTTGCTGCTGGT
ACTGCCAAGGCAACATCCCGCCAGGGGTTTCGCAGTTCGTCTGTGACGGC
GTCTCCTGTGAAGGTGAAACCGCCAAGGGTATCTGAAACAGGCTCGGACC
AAGGGGTCGGCGGCGAGGAATGA
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