mRNA_E_fasciculatus_S2_contig9450.17487.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9450.17487.1
Unique NamemRNA_E_fasciculatus_S2_contig9450.17487.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9450.17487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD3_9PHAE)

HSP 1 Score: 370 bits (949), Expect = 5.630e-121
Identity = 242/332 (72.89%), Postives = 253/332 (76.20%), Query Frame = 1 
Query:    1 ERWSYRGTGGDGIMLNSIAADPITGWIVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDVSGKFFLGGFSTAAWVGGAGDDEDVVAMKFERLSTTVARTDAPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQTVPSXXXXXXXXXXXXXXFLPVXXXXXXXXXERDATLPTAAPVVASAEAVDGSGSSEALENWAVGAIVAGGGLFLALLAXXXXXXXXXXXXXXXXXXXXXAKALQVLPVPSTKPQRMVFVDVYPDEDEDAKFTSRDEEGADLGGTKLAXXXXXXATKVGDNL 996
            ERWSYRGTGGDGIMLNS+AADPITGW+VGAGGAQG+WVEGAS GGFD+AAVVLDGDSGAELTRWQDGTLGDDVLEFVEFD+SG+FFLGGFSTAAWVGG GDDEDVVAMKFERL++TVARTDAPS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            TA  VPS                P           RDATL TAAP VASAEAVDGSGSSEALENWAVG IVAGGGLFLALLA                       +LQVLPVPSTKPQRMVFVDVYP+EDEDAKFTSRDEEGA+LGGTKL         KVGDNL
Sbjct:  310 ERWSYRGTGGDGIMLNSVAADPITGWVVGAGGAQGNWVEGASVGGFDYAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDISGEFFLGGFSTAAWVGGTGDDEDVVAMKFERLASTVARTDAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPLP--------TAPLVPSLSPTRGSTAAPATAVPPFAETPSPSAAARDATLLTAAPAVASAEAVDGSGSSEALENWAVGTIVAGGGLFLALLAL----------------------SLQVLPVPSTKPQRMVFVDVYPEEDEDAKFTSRDEEGAELGGTKLVGSNLVSVKKVGDNL 611
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BLAST of mRNA_E_fasciculatus_S2_contig9450.17487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD2_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 6.230e-114
Identity = 273/332 (82.23%), Postives = 281/332 (84.64%), Query Frame = 1 
Query:    1 ERWSYRGTGGDGIMLNSIAADPITGWIVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDVSGKFFLGGFSTAAWVGGAGDDEDVVAMKFERLSTTVARTDAPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQTVPSXXXXXXXXXXXXXXFLPVXXXXXXXXXERDATLPTAAPVVASAEAVDGSGSSEALENWAVGAIVAGGGLFLALLAXXXXXXXXXXXXXXXXXXXXXAKALQVLPVPSTKPQRMVFVDVYPDEDEDAKFTSRDEEGADLGGTKLAXXXXXXATKVGDNL 996
            ERWSYRGTGGDGIMLNSIAADPITGW+VGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFD+SG+FFLGGFSTAAWVGG GDDEDVVAMKFERL+TTVARTD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        TA +VPS                  XXXXXXXXX            VASAEAVDGSGSSEALENWAVG IVAGGGLFLALLAXXXXXXXXXXXXXXXXXXXXX KALQVLPVPSTKPQRMVFVDVYPDEDEDAKFTSRDE+GA+LGG+K  XXXXXX   VGDNL
Sbjct:  238 ERWSYRGTGGDGIMLNSIAADPITGWVVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDISGEFFLGGFSTAAWVGGTGDDEDVVAMKFERLATTVARTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------TAISVPSPSPTPGSTAAPATAXXXXXXXXXXXXXXXXXXXXXXXXAVASAEAVDGSGSSEALENWAVGTIVAGGGLFLALLAXXXXXXXXXXXXXXXXXXXXXXKALQVLPVPSTKPQRMVFVDVYPDEDEDAKFTSRDEDGAELGGSKXXXXXXXXXXXVGDNL 561
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BLAST of mRNA_E_fasciculatus_S2_contig9450.17487.1 vs.
Match: Fibronectin (type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.400e-22
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 1 
Query:    7 WSYRGTGGDGIMLNSIAADPITGWIVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDVSGKFFLGGFSTAAWVGGAGDDEDVVAMKFERLSTTVARTDAPSS 375
            W+Y G          +A DP TGW+VGAG  +G W+ GA+QGG+DFAAVVLDGD+G E+ R+QDGT  DD L FV FD  G   LGG    +W     D+   VA+KF   S   A T APSS
Sbjct:  320 WTYEGVATSRAGFFGVAVDPTTGWVVGAGWTEGTWLTGAAQGGYDFAAVVLDGDTGDEIGRYQDGTTDDDYLSFVGFDAVGGLILGG----SWTDTGADE--FVAIKFAPGS---ASTPAPSS 433
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BLAST of mRNA_E_fasciculatus_S2_contig9450.17487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD80_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.210e-19
Identity = 54/108 (50.00%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    7 WSYRGTGGDGIMLNSIAADPITGWIVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDVSGKFFLGGFSTAAWVGGAGDDEDVVAMKF 330
            W+Y G        + IA D  TGW+VGAG   G W+ GA+QGG+DFAAVVLDG +G EL R+QDGT  DD L FV FD  G   +GG     W    GD+   VA+KF
Sbjct:  315 WTYEGVNTSSAGFSRIAVDLTTGWVVGAGWTTGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDDYLSFVGFDSVGGLIIGG----QWTDTGGDE--FVAIKF 416
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BLAST of mRNA_E_fasciculatus_S2_contig9450.17487.1 vs.
Match: Fibronectin (type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC9_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.340e-19
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:    7 WSYRGTGGDGIMLNSIAADPITGWIVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDVSGKFFLGGFSTAAWVGGAGDDEDVVAMKFERLSTTVART 360
            W+Y G       L  +A D  TGW+VGAG  +G W+ GA+QGG+DFAAVVLDG +G EL R+QDGT  D+ L FV FD  G   LGG    +W    GD+   VA+KF   +++   T
Sbjct:  316 WTYEGVTTSSAGLICVAVDLTTGWVVGAGWTEGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDEYLSFVGFDSVGGLILGG----SWTDTGGDE--FVAIKFAPWNSSYPTT 427
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BLAST of mRNA_E_fasciculatus_S2_contig9450.17487.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX8_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.590e-19
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    7 WSYRGTGGDGIMLNSIAADPITGWIVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDVSGKFFLGGFSTAAWVGGAGDDEDVVAMKF 330
            W+Y G         S+A D  TGW+VGAG   G W+ GA+QGG+DFAAVVLDG +G EL R+QDGT  DD L+FV FD  G   LGG  T         + + VA+KF
Sbjct:  316 WTYEGVATSSAGFRSVAVDLTTGWVVGAGWTTGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDDSLKFVGFDSVGGLILGGSWTDT------GEAEFVAIKF 417
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9450.17487.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD60_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.970e-16
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    7 WSYRG--TGGDGIMLNSIAADPITGWIVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDVSGKFFLG 264
            W+Y G  T GDG     +A D  TGW+VGAG  +G WV GA+QGG+D AAV+LDG +G EL R+Q+GT  DD L F  FD +G F  G
Sbjct:  244 WTYEGMATSGDGFY--DLAVDLTTGWVVGAGWTEGTWVTGAAQGGYDVAAVLLDGVTGNELGRYQNGTTDDDYLAFAGFDSAGGFSRG 329
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9450.17487.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized5.630e-12172.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.230e-11482.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Fibronectin1.400e-2249.59type III domain protein n=1 Tax=Ectocarpus silicul... [more]
Uncharacterized1.210e-1950.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Fibronectin1.340e-1946.61type III domain protein n=1 Tax=Ectocarpus silicul... [more]
Uncharacterized3.590e-1949.07protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.970e-1653.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9450contigE_fasciculatus_S2_contig9450:562..2569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size996
Hectar predicted targeting categoryother localisation
Exons3
Cds size744
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.5971568-UTR-E_fasciculatus_S2_contig9450:561..7491696842593.5971568-UTR-E_fasciculatus_S2_contig9450:561..749Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9450 562..749 +
1696842593.6412795-UTR-E_fasciculatus_S2_contig9450:2505..25691696842593.6412795-UTR-E_fasciculatus_S2_contig9450:2505..2569Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9450 2506..2569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.6087897-CDS-E_fasciculatus_S2_contig9450:749..13121696842593.6087897-CDS-E_fasciculatus_S2_contig9450:749..1312Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9450 750..1312 +
1696842593.619229-CDS-E_fasciculatus_S2_contig9450:1880..19461696842593.619229-CDS-E_fasciculatus_S2_contig9450:1880..1946Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9450 1881..1946 +
1696842593.6305623-CDS-E_fasciculatus_S2_contig9450:2390..25051696842593.6305623-CDS-E_fasciculatus_S2_contig9450:2390..2505Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9450 2391..2505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9450.17487.1prot_E_fasciculatus_S2_contig9450.17487.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9450 750..2505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9450.17487.1

>prot_E_fasciculatus_S2_contig9450.17487.1 ID=prot_E_fasciculatus_S2_contig9450.17487.1|Name=mRNA_E_fasciculatus_S2_contig9450.17487.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=248bp
MARRDLGRRRPGVRRVRRQREVFPRGLLDGSLGGRGRGRRGRRRHEVRAP
VNHRGSHGRSVVGADLQPYRRPHLFPVTPAHATAVTPAHATAVTPAHAAT
VTSAHGTNCAFAITYAWVDGGTRGRFSPGRGNAISVGGGARRHVAYRGPR
RCVGGGSRRVRVVGGAGELGRRGDRGRGWALSRTAGAMLVFSAAKSESQD
GGDRRCSGESPTGSARTEYQATAHGFRRRVPRRGRRREIYLAGRGGG*
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mRNA from alignment at E_fasciculatus_S2_contig9450:562..2569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9450.17487.1 ID=mRNA_E_fasciculatus_S2_contig9450.17487.1|Name=mRNA_E_fasciculatus_S2_contig9450.17487.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2008bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9450:562..2569+ (Ectocarpus fasciculatus EfasUO2)
GAGAGGTGGTCCTACCGGGGGACAGGCGGGGACGGGATCATGCTTAACAG
CATCGCGGCCGACCCGATCACCGGCTGGATCGTTGGCGCCGGAGGAGCTC
AGGGCGACTGGGTCGAAGGAGCGAGCCAGGGCGGCTTCGACTTCGCCGCC
GTCGTCCTCGACGGGGACTCTGGGGCCGAGCTCACCAGATGGCAAGACGG
GACCTTGGGCGACGACGTCCTGGAGTTCGTCGAGTTCGACGTCAGCGGGA
AGTTTTTCCTCGGGGGCTTCTCGACGGCAGCCTGGGTGGGCGGGGCCGGG
GACGACGAGGACGTCGTCGCCATGAAGTTCGAGCGCCTGTCAACCACCGT
GGCTCGCACGGACGCTCCGTCGTCGGCGCCGACCTCCAGCCCTACCGCCG
CCCCCACCTATTCCCCGTCACTCCCGCCCACGCTACCGCCGTCACTCCCG
CCCACGCTACCGCCGTCACTCCCGCCCACGCTGCCACCGTCACCTCCGCC
CACGGCACAAACTGTGCCTTCGCTATCACCTACGCCTGGGTCGACGGCGG
CACCCGCGGCCGCTTTTCTCCCGGTCGCGGGAACGCCATCTCCGTCGGCG
GCGGAGCGAGACGCCACGTTGCCTACCGCGGCCCCCGTCGTTGCGTCGGC
GGAGGCAGTAGACGGGTCCGGGTCGTCGGAGGCGCTGGAGAACTGGGCCG
TCGGGGCGATCGTGGCCGGGGGTGGGCTCTTTCTCGCACTGCTGGCGCTA
TGTGAGTGACCGCGAGAGAAGTAAAATCGCACGCCCCTGGGGCATAGTTA
GCCCACCAATTGCTACGGCAGCCTCCCTGGTTGTGACGGCTGGATGATTT
GTTTTGTTGTTCATTGCCGAATGCCATCATCGCTCAGGCGTGCCCATGTC
CTTACCGGTGACAGGGACCAGACTGGTCGAACGAAGTCCACAATCCCAGA
GTTGCTTCACGGCAATCTTGATGTTGTATTCCCAATGCGGAACAAAAGAT
CCCGGCCCAGATACCACCGAGATAGCCAGCAATGTTCAGACGTTCATTTT
GGCAGAATCGTAGGTTTGGCTCGCATTGCAAAGGTTCCGCACGCGCAAGT
CACGTCGTTTGGCACATGTTTCCGGCTTGTGGTGCGACTCGTCTGCCGTT
TGTGCGACCCACCGCTGCGTGTCGCGTTTGGCGTTCGTGAGTCTTTCTAG
CCTGCTGCTCGTCACCCTCGCCCTTGTGAACTTTGGATCGTTCTCTGCCG
GTCGTACTTTATGCATGTCATCTTGAGCATCGCATCTTCTCTGCCAAATG
CTGCACGTGTTGCGATCAGGCTTGTGTTCAGTGCGGCGAAGAGCGAAAGC
CAAGATGGCGGAGATCGCCGCTGCTCAGGCGAAAGGTGTGTGGCCCGCGC
TTGCTGTCTACCGCGTTGTTGGACGCAACGCTCGGCGAAACCTCTACGAC
GTATGGGGCAGTTGTCCATTCCCTTGTTGGCGGCACACACTTTAGTAAGG
CATGCCGAATCGTGTAGCGCTCCTCCGCAGCTGAGTACCTTCACGCGCTG
ACCTCCGTACTGCGTGGGACACGCTCAGAAAGGCTTCATAGGCGAACAAC
GGGCGCTTGAAGTCTTTTCACGTGTCAAGGATGGATAGATGACGACGGCC
TCTCTCTAAGCCGCACCCCGCGGCTGTCGGTCTTGACAATGACAAGTCTA
GAGTTGCTTATCTCTTTCTGTTGGTTCCATTTTTCGTGGGCTCCTCATCC
TTTTTCGACGCCACTGGTGGCAACCTCTTCCAACCCATGCTTTACGTCCT
GTGTGCGTTCCCGTCTCTTCTTCGTCCAGCCCTACAGGTTCTGCCCGTAC
CGAGTACCAAGCCACAGCGCATGGTTTTCGTCGACGTGTACCCCGACGAG
GACGAAGACGCGAAATTTACCTCGCGGGACGAGGAGGGGGCTGACTTAGG
GGGGACCAAGTTGGCGGGGTCTAATTTAGTGGGTGCCACGAAGGTGGGAG
ACAATCTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9450:562..2569+

>mRNA_E_fasciculatus_S2_contig9450.17487.1 ID=mRNA_E_fasciculatus_S2_contig9450.17487.1|Name=mRNA_E_fasciculatus_S2_contig9450.17487.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=744bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9450:562..2569+ (Ectocarpus fasciculatus EfasUO2)
ATGGCAAGACGGGACCTTGGGCGACGACGTCCTGGAGTTCGTCGAGTTCG
ACGTCAGCGGGAAGTTTTTCCTCGGGGGCTTCTCGACGGCAGCCTGGGTG
GGCGGGGCCGGGGACGACGAGGACGTCGTCGCCATGAAGTTCGAGCGCCT
GTCAACCACCGTGGCTCGCACGGACGCTCCGTCGTCGGCGCCGACCTCCA
GCCCTACCGCCGCCCCCACCTATTCCCCGTCACTCCCGCCCACGCTACCG
CCGTCACTCCCGCCCACGCTACCGCCGTCACTCCCGCCCACGCTGCCACC
GTCACCTCCGCCCACGGCACAAACTGTGCCTTCGCTATCACCTACGCCTG
GGTCGACGGCGGCACCCGCGGCCGCTTTTCTCCCGGTCGCGGGAACGCCA
TCTCCGTCGGCGGCGGAGCGAGACGCCACGTTGCCTACCGCGGCCCCCGT
CGTTGCGTCGGCGGAGGCAGTAGACGGGTCCGGGTCGTCGGAGGCGCTGG
AGAACTGGGCCGTCGGGGCGATCGTGGCCGGGGGTGGGCTCTTTCTCGCA
CTGCTGGCGCTATGCTTGTGTTCAGTGCGGCGAAGAGCGAAAGCCAAGAT
GGCGGAGATCGCCGCTGCTCAGGCGAAAGCCCTACAGGTTCTGCCCGTAC
CGAGTACCAAGCCACAGCGCATGGTTTTCGTCGACGTGTACCCCGACGAG
GACGAAGACGCGAAATTTACCTCGCGGGACGAGGAGGGGGCTGA
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