mRNA_E_fasciculatus_S2_contig9444.17480.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9444.17480.1
Unique NamemRNA_E_fasciculatus_S2_contig9444.17480.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9444.17480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.240e-40
Identity = 79/92 (85.87%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:  148 GVYGSLPLFLAGLLSLG-RRSDEGGWGGGLLLAVTGQDYIDGGDVSMTCDDCDCRGSSDDGTIVVFENPATESLVAKVEGEFSEVVETSCGS 420
            GVYGSL LF+AG L LG RR DEG WGG LLLAVTGQ+YIDGGDVSM CD+CDCRGSSD GTIVVFENPATESLVAKVEGE+SEVVETSCGS
Sbjct:   40 GVYGSLRLFVAGFLLLGGRRGDEGDWGG-LLLAVTGQEYIDGGDVSMACDECDCRGSSDSGTIVVFENPATESLVAKVEGEYSEVVETSCGS 130
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BLAST of mRNA_E_fasciculatus_S2_contig9444.17480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.810e-9
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  229 GLLLA--VTGQDYIDGGDVSMTCDDCDCRGSSDDGTIVVFENPATESLVAKVEGEFSEVVETSCGS 420
            GL+LA  V+ Q + DGG V ++C  CDC GSSD  + VVF+NP++   +  V+G++SE+++TSCG+
Sbjct:   54 GLVLAGGVSSQ-FTDGGAVDLSCGLCDCTGSSDGVSFVVFDNPSSGERIVSVDGDYSEILDTSCGT 118
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9444.17480.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.240e-4085.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.810e-946.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9444contigE_fasciculatus_S2_contig9444:2986..5674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_004140.1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842592.871179-UTR-E_fasciculatus_S2_contig9444:2985..30001696842592.871179-UTR-E_fasciculatus_S2_contig9444:2985..3000Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9444 2986..3000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842592.887805-CDS-E_fasciculatus_S2_contig9444:3000..33511696842592.887805-CDS-E_fasciculatus_S2_contig9444:3000..3351Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9444 3001..3351 +
1696842592.9088435-CDS-E_fasciculatus_S2_contig9444:5620..56741696842592.9088435-CDS-E_fasciculatus_S2_contig9444:5620..5674Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9444 5621..5674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9444.17480.1prot_E_fasciculatus_S2_contig9444.17480.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9444 3001..5674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9444.17480.1

>prot_E_fasciculatus_S2_contig9444.17480.1 ID=prot_E_fasciculatus_S2_contig9444.17480.1|Name=mRNA_E_fasciculatus_S2_contig9444.17480.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
MAPAASAAAGSTTICITEPEGRRRRKRRRQNSSSSSSSSSRSCMGVYGSL
PLFLAGLLSLGRRSDEGGWGGGLLLAVTGQDYIDGGDVSMTCDDCDCRGS
SDDGTIVVFENPATESLVAKVEGEFSEVVETSCGS
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mRNA from alignment at E_fasciculatus_S2_contig9444:2986..5674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9444.17480.1 ID=mRNA_E_fasciculatus_S2_contig9444.17480.1|Name=mRNA_E_fasciculatus_S2_contig9444.17480.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2689bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9444:2986..5674+ (Ectocarpus fasciculatus EfasUO2)
GTGAAGGATAAAAGGATGGCTCCTGCAGCTTCTGCTGCTGCTGGCTCTAC
CACAATCTGCATAACAGAGCCAGAGGGAAGGCGGAGGAGGAAGAGGAGGA
GACAAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCTGCATGGGG
GTCTATGGCTCGTTGCCGCTCTTCCTCGCGGGCCTCTTGTCGTTGGGACG
GAGGAGCGACGAGGGCGGCTGGGGTGGAGGGTTGCTGCTTGCCGTAACGG
GCCAGGATTATATCGACGGCGGGGACGTGAGCATGACCTGCGACGACTGC
GACTGCAGGGGAAGCTCGGACGACGGAACCATCGTCGTGTTCGAGAATCC
AGCGACAGAATCCCTGGTGAGAAGAGAAAGCCCTGCTGCTGCTGCTGTGG
TTCTGGGGTTCCGGTACGTTGAAATGCCAGGCAGCAGCGCGGGGGGGTTT
AGTCTACCGGGCCAAGAGCTCCCACACTCTGACAGCTATTATTGTATATA
TGCGTATTCTAGTCAGCAGATGCACAGCAGGCTGATGGTACGTACGAAAG
GGTAGGGGTGCAAAGCAAGAGAGGACAGATCAAGGCCTCTCACACTCCTT
GCCCTCATAGATATTTCAGGCCAGTTTGGTCGCCCATGGTCGTATGTAGA
TAGGTCTTACCGTCCCTATGTAGTCGGAGTGTGTCTGTCGTGGGAAATCT
TAAATCTTGGGGTATTCCATCCTCTTCTTGGAACATAGTCTTCAACAGCA
GTTGGGGGCATCTACAGCAGTATTATACAAGTCACGCCTCCGAGGTGACA
ACGCTCGTCAACACTCCGCCGCCGCACTGGCTGGAACATGCAGCCTCGAA
GGCTCAGTAGCCTACGCAGCAAAAATTGGTTAAGCAAACATATGGGATAA
AGTATTCAATCCGTGCTTTGGGGTTAGGGTTAGGGTTAGGGATAGGGTCT
GCGTGCCCCCTCCCTCTTCTTTTCCTAGATACTGCGTAGGCGGTCCCGAA
GGCTGAGGCTGGTTGCAATGTTAATGTTGCAAGCAATCAAGTCTCGTGTC
AGGCGAGCACCGCGGGTGATCTGGATCCCAACCGCTTTGTCTTTTCGCGC
TCTTGACAGAGGGGAGAGTTGCCGAACACCCAACTCATGTGATACTCAAC
CGTTACATACAACGGTCACATGATACGTTAGCCCATGGCAAATGACTTCC
TCCCGTAGTTTTGACAAGGGTAGTCACTGCTTGCTGACGAAGTAGTTGTT
TGTCGATGTCCCCGGAGTCCGGTGTCTGTTGGATACAGGCACATGTATGT
AGTCTTCTTTCTGCAGCCGGCAAGTTGGGTTAGGGTTTGGGTTAGGGAAT
AGGGTCTGCGTATCCCCTTCCTGTACTTTTTCCTCAAAATACTAAAACCC
CGAAGGCGGTCCCACGCGGGGGGGGGTGGCTCTCTGGGCCTTTTCTTTTC
TTGCCTTGCCTTTATAGTATATCTCGTTACCCGGCGATAAAGAGAAGGAG
ACGGCGGGACCAGGATTGTAGTAGTTTGTCGACCTTGATTACGACATTGA
CCTCAGAATCGAGAAATTCATCATACGCACAGCATGCTCGTTGAGACGCG
TTTTGTGCTTCAAGTTGGGGTGCGCTGTTTGCTCTTGAGGGAGGGAGGAG
TTTGTGCCATACGAACAGGAATATATTTACTCCGTCGCCTACTGACACTC
AGAAAACATACGTGCTGTATCCATGTACGACTTTTCTTTGGGGGGGAGGG
GGGGGGTGTACGCATAGTTGTGCATGCCGTAGTCGTTAGACCATAGACCT
CGCATCCCTACAAAGCCGGGACGGAGCACGCTGGGCTCTCACCGGACCAG
GCTCTCACATCACCAAGGGCGAAGCGCCGTGAGGTGTTAGGCGAGTCGCA
TGAAGGGTGCGCTGCATCCTGCTAAGGGTGTTCGGCGTCTTGTGCTACTT
CCTTGCGTACGAATGACAGCTGCGAATGACTTATTTTATTTTCTGGTGCC
TTCACTTCCAGAGACAGTTGTAAGCACTGTGTAACTGCCTCGAGGGTGCT
TGACCAACTTAACACAACGTGGGGCGATCATCCCCTTTGCGCGGAGTGAG
CTTTCTCGACCCCACACAACACAATCTCTACTCGACCACCATTACGGTTG
CCGATAAAAATCAAAGGCAACAAAAAAGGCGGTAACCTTGGTTGTCGAGT
TCACGAAGCGATCGGCCTTTTTTACAACGTCGTTGCCAAGCGATGAAAAC
CCAACCCCGACGGCAACCACCGGAGGGGGGGGGGGGCGGCGGCAATTGTT
CCTTCCTACTTTGCTGAAGGCGGCTCAAAAATGTCTTCCCTAGTCTATCT
ACCCTACTTGTTTGGGGCGGGGGGTGTACTGATGTTAACGCCTGCCATAG
TCGTCAGACCATTGACCTCGCATCCCTACGGCAGTTGCCGGGACGGAGCG
ATATGCCGGGTTTTCGCCGCCCCAGGATACGTTTCACAAGGATGACTATT
GAACAAGAACCCGGCATCATCCTTGCGTTTGGGGGGTACCCCTCCCCCCC
AATAGATCCGCGTGTCTGTTTTTTATACCCACCGCCGTACTTTGCAACTG
CTCACCAACCGACCGATCCAACGGACGGCACGCAGGTTGCGAAGGTGGAG
GGGGAGTTCTCGGAGGTGGTGGAAACGAGCTGCGGGAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9444:2986..5674+

>mRNA_E_fasciculatus_S2_contig9444.17480.1 ID=mRNA_E_fasciculatus_S2_contig9444.17480.1|Name=mRNA_E_fasciculatus_S2_contig9444.17480.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9444:2986..5674+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTCCTGCAGCTTCTGCTGCTGCTGGCTCTACCACAATCTGCATAAC
AGAGCCAGAGGGAAGGCGGAGGAGGAAGAGGAGGAGACAAAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCCGCAGCTGCATGGGGGTCTATGGCTCGTTG
CCGCTCTTCCTCGCGGGCCTCTTGTCGTTGGGACGGAGGAGCGACGAGGG
CGGCTGGGGTGGAGGGTTGCTGCTTGCCGTAACGGGCCAGGATTATATCG
ACGGCGGGGACGTGAGCATGACCTGCGACGACTGCGACTGCAGGGGAAGC
TCGGACGACGGAACCATCGTCGTGTTCGAGAATCCAGCGACAGAATCCCT
GGTTGCGAAGGTGGAGGGGGAGTTCTCGGAGGTGGTGGAAACGAGCTGCG
GGAGC
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