mRNA_E_fasciculatus_S2_contig9421.17469.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9421.17469.1
Unique NamemRNA_E_fasciculatus_S2_contig9421.17469.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9421.17469.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6T9_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.360e-42
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:    1 MSDYAGNSRQPFWHMSMIRDPVDRVLATFLSLKARLAEEASLKTDEAVLDNGEPSGVGVGNYWSRTLNSWCGDTSYVQ 234
            MSDYA NSRQPFWHMSMIRDPVDR+LA FLSLKARLAEEASL+TDEA+ DNGEPSGVGVGNYWSRTLNSWCGDTSYVQ
Sbjct:  562 MSDYATNSRQPFWHMSMIRDPVDRILAMFLSLKARLAEEASLRTDEALFDNGEPSGVGVGNYWSRTLNSWCGDTSYVQ 639
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BLAST of mRNA_E_fasciculatus_S2_contig9421.17469.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.940e-6
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:    1 MSDYAGNSRQPFWHMSMIRDPVDR 72
            MSDYA NSRQPFWHMSMIRDPVDR
Sbjct:  533 MSDYARNSRQPFWHMSMIRDPVDR 556
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9421.17469.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.360e-4292.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.940e-695.83protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9421contigE_fasciculatus_S2_contig9421:2484..3833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size234
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001640.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842591.6958194-CDS-E_fasciculatus_S2_contig9421:2483..25551696842591.6958194-CDS-E_fasciculatus_S2_contig9421:2483..2555Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9421 2484..2555 +
1696842591.7109702-CDS-E_fasciculatus_S2_contig9421:3671..38331696842591.7109702-CDS-E_fasciculatus_S2_contig9421:3671..3833Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9421 3672..3833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9421.17469.1prot_E_fasciculatus_S2_contig9421.17469.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9421 2484..3833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9421.17469.1

>prot_E_fasciculatus_S2_contig9421.17469.1 ID=prot_E_fasciculatus_S2_contig9421.17469.1|Name=mRNA_E_fasciculatus_S2_contig9421.17469.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
MSDYAGNSRQPFWHMSMIRDPVDRVLATFLSLKARLAEEASLKTDEAVLD
NGEPSGVGVGNYWSRTLNSWCGDTSYVQ
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mRNA from alignment at E_fasciculatus_S2_contig9421:2484..3833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9421.17469.1 ID=mRNA_E_fasciculatus_S2_contig9421.17469.1|Name=mRNA_E_fasciculatus_S2_contig9421.17469.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1350bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9421:2484..3833+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGACTACGCCGGGAACTCAAGACAGCCGTTCTGGCACATGTCGAT
GATCAGGGACCCTGTTGACCGGGTGAGCCATCCCTTTCCTGCCCCTTCCC
TGCAGTAGCCTTGGCTAGGATTTTTGTGTTGGTTTTGGTAGGGGTTACGC
GGTGATGTAAGGGGTTTGGGGGGTAGGGATAGGGATACAATCTCCCCCTC
TCTACTTGATGATCAATTCTCAAATCCTGGCAAAAGGTGGTCCCTTCCGT
GTCCTTCTGCATCTGCCGGCGACCCTCTACGTTTCGAGGCTTTTTGTATT
TCTTTCTTGTGGGAACACAACACATTCATCCCCTTCCCAGATAAGAGTCT
GGAACAAAGCATTGTAGCAATTAATTAATTCATGGCATCAGCGGAAGCTA
CTGCCTGTGCCGGTGCTTCTACGATTACCTGAGCAGCATGGTAGGCATGG
CTGTTGCCGGGGTGTGCAGTAGCTTTTCCCGATGAAGGACGTGTTTTGCT
TTTTTTTTTCTCCGAGTTTTTGCTCTCTGGAGTCTTGGAAGTCGATCCCG
GATTGCGATGTATAGACTATTAGAGGTTGTGAAATTGTGAAAATGTCTGC
GCACATGTCGTCGGAGAAACAAAAAAATGACGCACGGACGAAAGCTGGAA
TCGGCCAGGAAGTAGGCTTGCGCAGAAATAGCTTGTTTGGCGTACAGTAG
TACAGCAGTATACTAGACAAGCACGGGTAGCGCGCGTGGGACAAAGAAGG
CCCAGGTTTAGTTTCAAAAGAACGTTAAAGGCGGACATTTTCGAGTCGAA
GCAGAAGGAAGAGAAGTTCGCTCGGAATCACAAAATGGCAAATGACGATT
TAACGATTTCAGCCAGCGAGAAGAGGTAATTATGCTCAATTACCAATTAC
CAATTACCAGGAACGAGTTATGATGTAGGAGTATCATACTTCCAAGTATC
CTTTTTTGGTGTAAGTTCTAGCAAGGAGATATATCGGGGAATGAGAGCTG
AAAGAAAAACGATACCGCGCCACACCACGGCTATTTCCATATTGCTATAG
GTATAGTATGTCGGCTTAAAAACTCGATGGGTTTGTCGCTGATGGCGCCT
TCCTCTCTCTCTTTATCTCTCTCTCTCTCTCTCTCCCTCCCTCTCCCCCC
CCCGGTGCATAACACTTTATTCATGCAACGTACAACAGGTCCTGGCGACG
TTTCTGTCGCTGAAAGCAAGACTGGCGGAGGAAGCATCCCTGAAAACGGA
CGAGGCGGTGTTGGACAACGGGGAGCCAAGTGGTGTCGGGGTCGGGAACT
ATTGGAGCCGCACCCTCAACAGCTGGTGCGGGGACACGAGCTACGTGCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9421:2484..3833+

>mRNA_E_fasciculatus_S2_contig9421.17469.1 ID=mRNA_E_fasciculatus_S2_contig9421.17469.1|Name=mRNA_E_fasciculatus_S2_contig9421.17469.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9421:2484..3833+ (Ectocarpus fasciculatus EfasUO2)
ATGTCGGACTACGCCGGGAACTCAAGACAGCCGTTCTGGCACATGTCGAT
GATCAGGGACCCTGTTGACCGGGTCCTGGCGACGTTTCTGTCGCTGAAAG
CAAGACTGGCGGAGGAAGCATCCCTGAAAACGGACGAGGCGGTGTTGGAC
AACGGGGAGCCAAGTGGTGTCGGGGTCGGGAACTATTGGAGCCGCACCCT
CAACAGCTGGTGCGGGGACACGAGCTACGTGCAG
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