mRNA_E_fasciculatus_S2_contig939.17439.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig939.17439.1
Unique NamemRNA_E_fasciculatus_S2_contig939.17439.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig939.17439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN79_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 3.070e-58
Identity = 116/163 (71.17%), Postives = 124/163 (76.07%), Query Frame = 1 
Query:  112 MKYSIAAWFLWLYSAADALICSTEPIGSSRSGAARRPRRXXXXXXXXXXXXXXXXRCSAAGQAMATRWFCAADSSSHRSYPMMCGGVAGYDQRELVLREFTMPLQGSPGSYERRVRSECLREGGETATVVRWHISRADEATGHAHVEAVFLLATSVSGAETTI 600
            MKYSI AWF+WLY+AADALI ST PIGSS +GA+RR R                 R SAA Q M TR  CAADS  H+SY MMCG VA YDQ+ELVLREF +PLQ SPGSYERRVR+ECLREGGE ATVVRWHIS ADEATG AHVEAVFLLATSVSGAET I
Sbjct:    1 MKYSIVAWFVWLYTAADALI-STAPIGSS-AGASRRGR---IHRHLSAVTLLTLPRRSAARQEMGTRRLCAADSI-HKSYSMMCG-VADYDQQELVLREFALPLQASPGSYERRVRAECLREGGEAATVVRWHISHADEATGRAHVEAVFLLATSVSGAETAI 156
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BLAST of mRNA_E_fasciculatus_S2_contig939.17439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.270e-48
Identity = 108/163 (66.26%), Postives = 117/163 (71.78%), Query Frame = 1 
Query:  112 MKYSIAAWFLWLYSAADALICSTEPIGSSRSGAARRPRRXXXXXXXXXXXXXXXXRCSAAGQAMATRWFCAADSSSHRSYPMMCGGVAGYDQRELVLREFTMPLQGSPGSYERRVRSECLREGGETATVVRWHISRADEATGHAHVEAVFLLATSVSGAETTI 600
            MKYSI AWF+W Y+AADAL  +T PIGSS +GA+ R R                 R S AGQ M TR  CAADS  HRSYPMM  GVA  D +ELVLREF +PLQ SPGSYERRVR+ECLREGGETATVVRWHIS ADEATG AHVEAVFLLA SVS  + TI
Sbjct:    1 MKYSIVAWFVW-YTAADALF-ATAPIGSS-AGASHRGR---IHRHLSAATLLALPRRSDAGQGMGTRRLCAADSI-HRSYPMM-RGVAD-DHQELVLREFALPLQASPGSYERRVRAECLREGGETATVVRWHISHADEATGRAHVEAVFLLAASVSVDKITI 154
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig939.17439.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.070e-5871.17protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.270e-4866.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig939contigE_fasciculatus_S2_contig939:22539..25589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1760
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_003840.1
Cds size495
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842588.3638818-UTR-E_fasciculatus_S2_contig939:22538..236921696842588.3638818-UTR-E_fasciculatus_S2_contig939:22538..23692Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig939 22539..23692 -
1696842588.396085-UTR-E_fasciculatus_S2_contig939:25478..255891696842588.396085-UTR-E_fasciculatus_S2_contig939:25478..25589Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig939 25479..25589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842588.3751214-CDS-E_fasciculatus_S2_contig939:23692..237461696842588.3751214-CDS-E_fasciculatus_S2_contig939:23692..23746Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig939 23693..23746 -
1696842588.385689-CDS-E_fasciculatus_S2_contig939:25037..254781696842588.385689-CDS-E_fasciculatus_S2_contig939:25037..25478Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig939 25038..25478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig939.17439.1prot_E_fasciculatus_S2_contig939.17439.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig939 23693..25478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig939.17439.1

>prot_E_fasciculatus_S2_contig939.17439.1 ID=prot_E_fasciculatus_S2_contig939.17439.1|Name=mRNA_E_fasciculatus_S2_contig939.17439.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=165bp
MKYSIAAWFLWLYSAADALICSTEPIGSSRSGAARRPRRRRDRHLSASPL
PLPLPRCSAAGQAMATRWFCAADSSSHRSYPMMCGGVAGYDQRELVLREF
TMPLQGSPGSYERRVRSECLREGGETATVVRWHISRADEATGHAHVEAVF
LLATSVSGAETTIT*
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mRNA from alignment at E_fasciculatus_S2_contig939:22539..25589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig939.17439.1 ID=mRNA_E_fasciculatus_S2_contig939.17439.1|Name=mRNA_E_fasciculatus_S2_contig939.17439.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3051bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig939:22539..25589- (Ectocarpus fasciculatus EfasUO2)
GCAAGGGCTGACGAATACCGAAAGGGCTAGCTCCAACCCAACAAGGCACG
CACACAGCGCTACACGCCATCCCCTCCATAACTGGCTAACTCCTAACAGC
CGGGTTCGGCCATGAAGTACAGCATCGCTGCCTGGTTTCTCTGGCTCTAT
AGCGCTGCGGATGCTTTGATTTGTTCCACCGAACCGATCGGCAGCAGTCG
CTCGGGAGCCGCACGCCGACCGAGAAGAAGAAGAGACCGGCATTTATCGG
CATCACCACTGCCGCTACCGCTGCCGCGGTGCAGCGCCGCCGGGCAGGCA
ATGGCTACCCGTTGGTTCTGCGCTGCCGACAGCAGCAGCCACAGGAGCTA
CCCGATGATGTGCGGCGGCGTTGCTGGCTACGACCAGCGGGAGCTGGTTC
TGAGGGAGTTCACCATGCCTCTGCAAGGCAGCCCAGGGTCATACGAGAGG
AGGGTGAGGTCGGAGTGTCTGAGGGAGGGGGGCGAGACGGCTACGGTCGT
TCGGTGGCACATCAGCCGCGCGGACGAAGCGACAGGCCATGCTCATGTAG
AGGTGAGGGGGGGGGCGAGCGAGGCGAGCGAGATAGATGTGTGTGTTTGA
CTGCAAGCAACTTGTGTGTCGGAGGCCGAGTTTGACGGACTTGTAGACAA
CTGCGAAAACATGTGTCGCTCTGCTGTGACTGCCGTACACCGTTGTTGCA
TAGTAACTCCTACACATGTACATCGGATATCATGCGAAGTGTGGTCTGAA
GCAGCAGAGGGCCACAAAGCAATGCAGGTACACGTATGGAGGTTGGCAGC
CCTCAAGGTGCATCCTTGATCTACACACTGAACCGAGGTATCTATGCCAT
CATCTTTTGTGATACCAGGAGTTCGGTGAACCTGTGTGTACACCTTCAGA
GCCGCATGCAAGAGTAGCCAACGACTACGTGCGTCTACTGCTGTAGTGCC
CTCCTTTTGCGTGGCACCGTCCGCAGCCCGCGGCCGCGATGACAAGGTTG
ATAATATCGAGAACTTGGCATCCTTGCCAGTGATACGGGGTTCGGCCTGG
TGTGTTTTCGTCCGTATGCATAAGAGTACCCAAAAAATCCTGCTTTCAGC
ACAAAAGTTGGCAACAGCAGTGTTCTGCTACATACATCAGACATGCCGGT
ACCTGACATGGCATCCTATCTCTTTCAATCCCGTGAACACAACTCTTACC
AAAATACCACTCAGTGGCCCACAATTTGAAGTTGGTGACTTGTCGAAACC
TTGGTGGTTAGATCGGGGGTTAGATTCCGAAAGAAACAGCACGGCGGTGT
ACCAGTAGTGTTTGTTGGTGGATACGCAAACTGTTGTGTAGATAGGTCAG
GACCTTCCAAACCCTAGAGGAATTATTCCATGCGACCCCGGACCGAAGCT
CGTCATGTTCAGAGACAACGCAATACATAAGCTAGATCTTTGCGAGCAAC
GGGCACAAAGAAGCCATTGTTTTCTTACCTTTGATTTTCCTTCCCTTGTT
GCGTAGCTCCGATTTTCTGCCCTCGGCCTGCGTGAGGGCAACGCTGGATT
GTGGGTACCCTCCTCAACTCACCCTTTGATTGTCAGTTTTCCCATTTTTC
ATCAGCTTGACCAAACCAACGTCTTTCCTGCTTGGGGTGGGTCGTCCCAA
CTCTATGATGGGTGCGTCATCTGTCGTCCGTCTAACTCTCGCTGTCGCTC
TCACTGGGCATGTCTTTGCCTCTCTTGGGACCTCCCGCTCCCGCTCCTCC
CTTCTGTCTTGTCATTTTCGTCCCCGGGTTCAATTGCGATCTCTCATGTT
GCCGCCCTTCCCCCCGCATTGGTGCCAACTTCGCTCTGGGCAGGCTGTAT
TCCTCCTTGCCACAAGTGTTTCGGGAGCCGAGACCACGATCACCTAAGCG
CTATGACACCGACCAAGCTTCGTGCCCAACTTTAAAGCTGTCGGAGAAAA
CTGATGGCCGCTGGGGGTGTACGATCGACTTTTGCTGTGATAACTATAAT
ACGAGCGAGGGGAGCGCTGCTGCACGGCACTGCCGGTGGCACTAGCCTTG
ACGCTTGGGCGGCCTTTGTGACCTCCGGACGTCGTGGAGCCTAGCATTGT
AGCGAGTTCGTCGTTGGTGCGACAAGAAGGGGTCGCGCGCGATACGGCGA
ACGAGCTAACTATTTATTTACATCATGTGCCAGATTATCTCTCTGGATTG
GACCCCGAGGACCCATGACGGGCGGGAAATGTACAAGTTTGGCGCGTCAC
TAAACCTGACGCTACATCGTTGTGTTTTGAGGTACTCCAGCTTCTTGAAG
CTAGGATTGCGAATATGGGAACGGGTACCCGGCGAAGGAGGGGGAAACAT
TTTTCCACACTAGAGAATCCCCGCCGAGGAAAGACAGGCTGTAGCAGGTG
CCGGAGAACGGGCGTAACGAAGAGATAAGCGATTGCAGGCGCACCATTTG
TCTAACTATCGGTTGTTTTGCGTTGCTTTTGTGTGCGTTGCCGACATCGG
GCGCCGTGTCGGTGCTGCCAAAATGAGGACCTACGCAGTTTTGTTTCCCG
TTGGGGGATAGCGGGTGTCATGGCGTCTCGCTTCGCTCTTCGCAAAGACG
TTCCCAAAGAGGTGTGTGTGTGGCGAATGGCGTGCGAGTTTTGGGGTGAT
GAGACAGATGTGCCTCGCGTCACTGGCACATCGTGTAGAGTTCATGATTC
AGCTAGTCTCGTGCTGCTCGTGTCCTGTTGTGCCGCCACAACGCTCTCTC
CGAGAAACGTTGGGCCTCGCACGGGCTTACCTTGCTTGGCCCCCTCTGGT
GAAGCACACCTACTGTTGTAGTGTGTGCCGTATGGGTTTTGCAAACTGCC
AGGACTGCACTCCAAACGAGCACCATCTGGTAGCTGTTGTGCGATGCAGG
AGGGCGCCTTGTGCTGTACTCGAGAACGATTACTGACTGTTGCCTATTTT
GAAAAAGTATGGTGTTGGGTTTTGTAAAAAAATCGATATCTTTCCTGAAA
TACCGATTTTTGTCATCCACCACAACAACGAAGCACCTGCCTTGTCTTCA
C
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig939:22539..25589-

>mRNA_E_fasciculatus_S2_contig939.17439.1 ID=mRNA_E_fasciculatus_S2_contig939.17439.1|Name=mRNA_E_fasciculatus_S2_contig939.17439.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=495bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig939:22539..25589- (Ectocarpus fasciculatus EfasUO2)
ATGAAGTACAGCATCGCTGCCTGGTTTCTCTGGCTCTATAGCGCTGCGGA
TGCTTTGATTTGTTCCACCGAACCGATCGGCAGCAGTCGCTCGGGAGCCG
CACGCCGACCGAGAAGAAGAAGAGACCGGCATTTATCGGCATCACCACTG
CCGCTACCGCTGCCGCGGTGCAGCGCCGCCGGGCAGGCAATGGCTACCCG
TTGGTTCTGCGCTGCCGACAGCAGCAGCCACAGGAGCTACCCGATGATGT
GCGGCGGCGTTGCTGGCTACGACCAGCGGGAGCTGGTTCTGAGGGAGTTC
ACCATGCCTCTGCAAGGCAGCCCAGGGTCATACGAGAGGAGGGTGAGGTC
GGAGTGTCTGAGGGAGGGGGGCGAGACGGCTACGGTCGTTCGGTGGCACA
TCAGCCGCGCGGACGAAGCGACAGGCCATGCTCATGTAGAGGCTGTATTC
CTCCTTGCCACAAGTGTTTCGGGAGCCGAGACCACGATCACCTAA
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