mRNA_E_fasciculatus_S2_contig9387.17436.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9387.17436.1
Unique NamemRNA_E_fasciculatus_S2_contig9387.17436.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9387.17436.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9387contigE_fasciculatus_S2_contig9387:157..1006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size435
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-00_007710.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842587.925428-CDS-E_fasciculatus_S2_contig9387:156..3371696842587.925428-CDS-E_fasciculatus_S2_contig9387:156..337Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9387 157..337 -
1696842587.9374409-CDS-E_fasciculatus_S2_contig9387:752..10061696842587.9374409-CDS-E_fasciculatus_S2_contig9387:752..1006Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9387 753..1006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9387.17436.1prot_E_fasciculatus_S2_contig9387.17436.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9387 157..1006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9387.17436.1

>prot_E_fasciculatus_S2_contig9387.17436.1 ID=prot_E_fasciculatus_S2_contig9387.17436.1|Name=mRNA_E_fasciculatus_S2_contig9387.17436.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=145bp
MFCAGHRQYGMVNVVSPQCGEVNCTRGPSYGFEGHRATFCARHKQEGQVN
VVSPRCKEEGCTRGPSYGHEGDRRASYCAQHKRPGMVNVVSRKCSIPGCG
KGPSYGRDGDRKASYCAVHKREGDVNLTNKRDSYSNPRYFARAE*
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mRNA from alignment at E_fasciculatus_S2_contig9387:157..1006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9387.17436.1 ID=mRNA_E_fasciculatus_S2_contig9387.17436.1|Name=mRNA_E_fasciculatus_S2_contig9387.17436.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=850bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9387:157..1006- (Ectocarpus fasciculatus EfasUO2)
ATGTTCTGCGCCGGACACCGGCAGTACGGGATGGTGAACGTGGTGTCCCC
CCAGTGCGGAGAGGTGAACTGCACGCGGGGCCCGTCCTACGGGTTCGAGG
GGCACAGGGCGACGTTCTGCGCCCGGCACAAGCAGGAGGGGCAGGTGAAC
GTGGTCTCGCCGCGGTGCAAGGAGGAGGGCTGCACCCGCGGCCCGAGCTA
CGGGCACGAAGGGGATCGCCGGGCGTCCTACTGCGCACAGCACAAACGAC
CCGGGTGAGGAAGTAGCTATTTGTTGTTATTGCTGATGTTGCCCGTCACT
TCGTCGGGAGTTGTTTTTACTCCTGCGCGACTACGAGATGATGTCAGCAC
TCTAACTTCGCTGCTTTCATGTGAAAAATAACAACCTGTAAGTCCCGTGA
GGTGATCACTGGTCTTGAAAGAACATGGTTTTGTTTAAGGTACGATTGTT
GGACAAATGTTTACTCGTTACAACAGAGTTTTATGATTTTCGGTGGCTTT
GTCTCTCGAGTTATCTATTTCCCCGAGCGAATCGGTGGTCAAGCCGGGGG
TTCAGCAGGATCATGAAACAGGACGAACCCCCCACCCCCCCCGTCTTCTA
CGGCCCCGCTCCGCCTAACGTATCGCTTCACACCCGCCCGAATGCACGTC
CTGTTGTCAAATTCCGAAGCATGGTAAACGTCGTCAGCCGCAAGTGCTCC
ATCCCCGGCTGCGGCAAGGGGCCGAGCTACGGCAGGGACGGGGACCGGAA
AGCCAGCTACTGCGCCGTGCACAAGCGGGAGGGGGACGTCAACCTCACGA
ACAAACGGGACAGCTACAGCAACCCGCGTTACTTCGCTCGGGCCGAGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9387:157..1006-

>mRNA_E_fasciculatus_S2_contig9387.17436.1 ID=mRNA_E_fasciculatus_S2_contig9387.17436.1|Name=mRNA_E_fasciculatus_S2_contig9387.17436.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=435bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9387:157..1006- (Ectocarpus fasciculatus EfasUO2)
ATGTTCTGCGCCGGACACCGGCAGTACGGGATGGTGAACGTGGTGTCCCC
CCAGTGCGGAGAGGTGAACTGCACGCGGGGCCCGTCCTACGGGTTCGAGG
GGCACAGGGCGACGTTCTGCGCCCGGCACAAGCAGGAGGGGCAGGTGAAC
GTGGTCTCGCCGCGGTGCAAGGAGGAGGGCTGCACCCGCGGCCCGAGCTA
CGGGCACGAAGGGGATCGCCGGGCGTCCTACTGCGCACAGCACAAACGAC
CCGGCATGGTAAACGTCGTCAGCCGCAAGTGCTCCATCCCCGGCTGCGGC
AAGGGGCCGAGCTACGGCAGGGACGGGGACCGGAAAGCCAGCTACTGCGC
CGTGCACAAGCGGGAGGGGGACGTCAACCTCACGAACAAACGGGACAGCT
ACAGCAACCCGCGTTACTTCGCTCGGGCCGAGTAA
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